Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004971

Physical Location & Seq

Genomic Coordinates Reverse (-)

13887043 .. 13891184

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G221000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCTCGATACAAAGATGAACCTACTGCAATTCGCGTTTACACAGTCTGCGACGAATCAAGGTATTTGATTGTGAGGAATGTTCCAGCTTTGGGATGCAGTGCTGAGCTGTTAAAATTGTTTGCGTCCTACGGAGAAGTAGAAGAGTGTAAACCAATGGATGAAGAAGATTGTGAGCCATTCACTGATGTTTATTGGATAAAGTTTCGTCTGGTCAGCAATGCCAGGTTTGCCAAGAGGAAATTGGATGAGTATGTTTTCCTAGGGAATCGACTTAAGGTTTCATATGCTCCTGAATTTGAGAGCCTTGCAGAAACAAAGGACAAGCTGGAAGGCAGGACAAGAGAAGTTCTAGGGCGATTGAACCCCGGAAGATCTAAGGGGTCTACAGCTAATAAATCACCTGCGTTGACTGACTCTTCTTTTGGTGCAATTCCTTCTCATCCTAACTGCATTCCCCAACTCGTAAACTCTAGTCAGAGGGACTCCGGAGAATCACAACTTACTTCGCACGTTAACAATCCTCCTCTTTCAAGGATTTCCTCTGACAAGGAGTATTTTGCTTCCCAATCAATGAATCAGACCGCCCAGATGGTGAGGGAGAAGCTCAATAAGATTCAATCAAGTAGTGAGTACCTGCAAGATGGACATGCATCCAAGAAACCGCGGGTGGACAATAGGAGGAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

26.09

Weight (kDa)

8.73

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27790 AT2G27790 AT2G27790 AT2G27790 AT5G27300 AT5G27300 AT5G27300
fragaria_vesca	FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340 FvH4_3g23340
malus_domestica	MD11G1211500.v1.1
prunus_persica	Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1 Prupe.4G221000_v2.0.a1
pyrus_communis	pycom11g18680
rosa_chinensis	RchiOBHm_Chr5g0041131
rosa_laevigata	RLG00000034028
rosa_multiflora	Rmu_co7980486.1_g000001 Rmu_sc0001760.1_g000004 Rmu_sc0009425.1_g000002 Rmu_sc0039274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039540
rosa_rugosa	Rorug05G0190000
rosa_samantha	Rh5AG275900 Rh5BG280600 Rh5CG312800 Rh5DG288900
rosa_wichuraiana	Rw5G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
Acc36I	ACCTGC	2 cut(s)	412, 645
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	2 cut(s)	36, 667
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	3 cut(s)	585, 665, 667
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	364, 534, 620
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	89, 109, 328, 392, 607
AluI	AGCT	5 cut(s)	89, 109, 328, 392, 607
Aor13HI	TCCGGA	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	296
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspA2I	CCTAGG	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	393, 607
AvrII	CCTAGG	1 cut(s)	262
BccI	CCATC	2 cut(s)	586, 638
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	3 cut(s)	263, 353, 474
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	412, 645
BglII	AGATCT	1 cut(s)	374
BlnI	CCTAGG	1 cut(s)	262
BlpI	GCTNAGC	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	226, 369
BmrFI	CCNGG	2 cut(s)	226, 369
BmsI	GCATC	2 cut(s)	86, 662
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	262, 367, 665
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	226
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	262, 367, 665
BseGI	GGATG	5 cut(s)	101, 166, 253, 442, 653
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	516
Bsh1236I	CGCG	2 cut(s)	36, 667
BsiSI	CCGG	2 cut(s)	369, 489
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	453
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	374
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	585, 665, 667
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	488
BspFNI	CGCG	2 cut(s)	36, 667
BspMI	ACCTGC	2 cut(s)	412, 645
BspTI	CTTAAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	262, 367, 665
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	138, 424
BstAFI	CTTAAG	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	105, 378
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	5 cut(s)	101, 166, 253, 442, 653
BstFNI	CGCG	2 cut(s)	36, 667
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	224, 367
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	2 cut(s)	36, 667
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	5 cut(s)	101, 166, 253, 442, 653
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 183
BveI	ACCTGC	2 cut(s)	412, 645
Cfr42I	CCGCGG	1 cut(s)	668
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	1 cut(s)	650
CviJI	RGCY	7 cut(s)	89, 109, 178, 306, 328, 392, 607
CviKI_1	RGCY	7 cut(s)	89, 109, 178, 306, 328, 392, 607
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	2 cut(s)	105, 378
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	138, 424
EarI	CTCTTC	2 cut(s)	138, 424
Eco130I	CCWWGG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	653
FaiI	YATR	4 cut(s)	255, 286, 288, 651
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	1 cut(s)	649
FauI	CCCGC	1 cut(s)	660
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	386
FokI	GGATG	5 cut(s)	108, 173, 260, 429, 640
FspBI	CTAG	3 cut(s)	263, 353, 474
HapII	CCGG	2 cut(s)	369, 489
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	653
HincII	GTYRAC	2 cut(s)	411, 517
HindII	GTYRAC	2 cut(s)	411, 517
HinfI	GANTC	8 cut(s)	56, 268, 416, 485, 494, 577, 616, 687
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	369, 489
HphI	GGTGA	2 cut(s)	393, 607
Hpy166II	GTNNAC	7 cut(s)	40, 152, 387, 411, 469, 517, 673
Hpy188I	TCNGA	4 cut(s)	480, 547, 582, 692
Hpy188III	TCNNGA	2 cut(s)	293, 489
Hpy8I	GTNNAC	7 cut(s)	40, 152, 387, 411, 469, 517, 673
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	326, 447
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	7 cut(s)	29, 99, 311, 431, 453, 640, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	105, 378
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	488
KspAI	GTTAAC	1 cut(s)	517
KspI	CCGCGG	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	374
LmnI	GCTCC	1 cut(s)	295
LweI	GCATC	2 cut(s)	86, 662
MaeI	CTAG	3 cut(s)	263, 353, 474
MaeII	ACGT	1 cut(s)	513
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	5 cut(s)	155, 176, 179, 384, 411
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	5 cut(s)	30, 116, 242, 296, 432
MlyI	GAGTC	2 cut(s)	410, 479
MnlI	CCTC	9 cut(s)	15, 69, 231, 474, 534, 537, 553, 591, 675
Mph1103I	ATGCAT	1 cut(s)	655
MroI	TCCGGA	1 cut(s)	488
MseI	TTAA	3 cut(s)	113, 276, 516
MspA1I	CMGCKG	1 cut(s)	667
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	369, 489
MspR9I	CCNGG	2 cut(s)	226, 369
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	2 cut(s)	36, 667
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	369
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	653
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	6 cut(s)	56, 268, 494, 577, 616, 687
PleI	GAGTC	2 cut(s)	410, 479
PpsI	GAGTC	2 cut(s)	410, 479
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SacII	CCGCGG	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	113, 276, 516
Sau3AI	GATC	1 cut(s)	374
SchI	GAGTC	2 cut(s)	410, 479
ScrFI	CCNGG	2 cut(s)	226, 369
SfaNI	GCATC	2 cut(s)	86, 662
SfcI	CTRYAG	1 cut(s)	387
Sfr303I	CCGCGG	1 cut(s)	668
SgrBI	CCGCGG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	30, 116, 242, 296, 432
SsiI	CCGC	3 cut(s)	585, 665, 667
SspMI	CTAG	3 cut(s)	263, 353, 474
StyD4I	CCNGG	2 cut(s)	224, 367
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	7, 271
TasI	AATT	5 cut(s)	30, 116, 242, 296, 432
TfiI	GAWTC	6 cut(s)	56, 268, 494, 577, 616, 687
Tru1I	TTAA	3 cut(s)	113, 276, 516
Tru9I	TTAA	3 cut(s)	113, 276, 516
TscAI	CASTG	2 cut(s)	106, 190
TspDTI	ATGAA	4 cut(s)	33, 177, 273, 590
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	106, 190
Vha464I	CTTAAG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	3 cut(s)	263, 353, 474
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.