Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Reverse (-)

12199075 .. 12200780

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATCCTGAACAGGAAATCTCAAACGAGACTTTGGAAACTATATTGGTAAGTTCAACAAAAGGAAGCAATAATAACAATAAGAAAATGGAAGAAGAAATGAAGAAGAAAGTATCAAGAGGAGAATTAGGAGGTGAAGCTCAAAATTGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCACAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGTACTCTTCGTAACGTTCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCCTCTTCCTCAGCTTTCTCCAAGAACAACAACAATAAGTCTATTAATTTCCATACTGATCCACTTCAGAACCCTTTAATTACGGGAATGCCACCATCATCTTTTGGTTATGATCACTCCATTGATCTCAACCTCGCTTTCGCTACTCTCCAAAAGCATCATTTATCCTCTCAAGCTACTACGCCTTCTTTTGGGTTTGGAGGTGATCTTTCTATTTATGGAAACTCAACGAATGATGTAGGGATCTTCGGAGGGCAAAACGGTACTTATAACAATAGTTTGTGTTATGGGTTTATGTCCGGAAATGGTAATAATAATCAAAATGAAATCAAGATGGCTTCTACATTGGGGATGTCTTTGGAAGGAAACGAGAGAAAGCAAGAGAATGTGAACAATAACAATAATAACTCAGAGAATCCTAGCAAGGTGTTCTGGGGGTTTCCATGGCAGATGACCGGAGATTCCGCCGGAGTTGTACCGGAGATTGATCCCGGAAGGGAAAGCTGGAATGGGATGGTTTCATCTTGGAATAATGGTTTACTCAACACTCCTTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

288

Amino Acids

31.78

Weight (kDa)

8.11

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	47 - 102	9.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	605
AciI	CCGC	2 cut(s)	255, 771
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	5 cut(s)	12, 300, 359, 557, 788
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	259, 571, 783
AfiI	CCNNNNNNNGG	2 cut(s)	281, 497
AgsI	TTSAA	1 cut(s)	57
AluBI	AGCT	4 cut(s)	140, 320, 482, 810
AluI	AGCT	4 cut(s)	140, 320, 482, 810
Alw26I	GTCTC	2 cut(s)	23, 206
AlwI	GGATC	5 cut(s)	12, 300, 359, 557, 788
Aor13HI	TCCGGA	1 cut(s)	605
AseI	ATTAAT	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	2 cut(s)	146, 521
BamHI	GGATCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	409, 634, 814
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	2 cut(s)	23, 206
BfaI	CTAG	2 cut(s)	726, 865
BfmI	CTRYAG	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	798
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	749
BsaWI	WCCGGW	3 cut(s)	605, 761, 784
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 497
Bse8I	GATNNNNATC	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	2 cut(s)	663, 825
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	281, 497
BseMII	CTCAG	2 cut(s)	330, 729
BseRI	GAGGAG	1 cut(s)	135
BsiSI	CCGG	5 cut(s)	606, 762, 774, 785, 798
BslI	CCNNNNNNNGG	2 cut(s)	281, 497
BsmAI	GTCTC	2 cut(s)	23, 206
BsmI	GAATGC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	605
Bsp143I	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	2 cut(s)	255, 771
BspCNI	CTCAG	2 cut(s)	329, 728
BspEI	TCCGGA	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	5 cut(s)	12, 300, 359, 557, 788
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
BssT1I	CCWWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	267, 316
BstDEI	CTNAG	2 cut(s)	316, 715
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	2 cut(s)	663, 825
BstKTI	GATC	8 cut(s)	7, 308, 367, 421, 433, 514, 552, 796
BstMAI	GTCTC	2 cut(s)	23, 206
BstMBI	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
BstSCI	CCNGG	1 cut(s)	796
BstSFI	CTRYAG	1 cut(s)	196
BstX2I	RGATCY	2 cut(s)	4, 549
BstYI	RGATCY	2 cut(s)	4, 549
BtgI	CCRYGG	1 cut(s)	749
BtsCI	GGATG	2 cut(s)	663, 825
Csp6I	GTAC	3 cut(s)	258, 570, 782
CviAII	CATG	1 cut(s)	750
CviJI	RGCY	5 cut(s)	140, 320, 482, 644, 810
CviKI_1	RGCY	5 cut(s)	140, 320, 482, 644, 810
CviQI	GTAC	3 cut(s)	258, 570, 782
DdeI	CTNAG	2 cut(s)	316, 715
DpnI	GATC	8 cut(s)	6, 307, 366, 420, 432, 513, 551, 795
DpnII	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
Eam1104I	CTCTTC	2 cut(s)	267, 316
EarI	CTCTTC	2 cut(s)	267, 316
EciI	GGCGGA	1 cut(s)	760
Eco130I	CCWWGG	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	1 cut(s)	753
FaiI	YATR	9 cut(s)	44, 198, 360, 417, 525, 576, 594, 602, 751
FatI	CATG	1 cut(s)	749
FbaI	TGATCA	1 cut(s)	418
FokI	GGATG	2 cut(s)	670, 832
FspBI	CTAG	2 cut(s)	726, 865
HapII	CCGG	5 cut(s)	606, 762, 774, 785, 798
Hin1II	CATG	1 cut(s)	753
HinfI	GANTC	3 cut(s)	161, 721, 767
HpaII	CCGG	5 cut(s)	606, 762, 774, 785, 798
HphI	GGTGA	2 cut(s)	146, 521
Hpy166II	GTNNAC	2 cut(s)	697, 845
Hpy188I	TCNGA	4 cut(s)	237, 375, 557, 718
Hpy188III	TCNNGA	4 cut(s)	8, 117, 606, 637
Hpy8I	GTNNAC	2 cut(s)	697, 845
Hpy99I	CGWCG	2 cut(s)	281, 297
HpyAV	CCTTC	3 cut(s)	501, 662, 795
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	316, 715
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	753
Kpn2I	TCCGGA	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
LpnPI	CCDG	8 cut(s)	21, 619, 724, 775, 787, 796, 798, 811
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	726, 865
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	182, 215, 266
MalI	GATC	8 cut(s)	6, 307, 366, 420, 432, 513, 551, 795
MboI	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
MboII	GAAGA	7 cut(s)	104, 107, 115, 118, 254, 303, 544
MflI	RGATCY	2 cut(s)	4, 549
MluCI	AATT	4 cut(s)	125, 145, 352, 384
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	9 cut(s)	113, 125, 222, 319, 325, 449, 484, 500, 551
MroI	TCCGGA	1 cut(s)	605
MseI	TTAA	2 cut(s)	351, 383
MspI	CCGG	5 cut(s)	606, 762, 774, 785, 798
MspR9I	CCNGG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	798
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
NlaIII	CATG	1 cut(s)	753
NlaIV	GGNNCC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PctI	GAATGC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	161, 721, 767
PfoI	TCCNGGA	1 cut(s)	796
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 549
RsaI	GTAC	3 cut(s)	259, 571, 783
RsaNI	GTAC	3 cut(s)	258, 570, 782
SaqAI	TTAA	2 cut(s)	351, 383
Sau3AI	GATC	8 cut(s)	4, 305, 364, 418, 430, 511, 549, 793
ScrFI	CCNGG	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	4 cut(s)	125, 145, 352, 384
SsiI	CCGC	2 cut(s)	255, 771
SspMI	CTAG	2 cut(s)	726, 865
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	125, 145, 352, 384
TfiI	GAWTC	3 cut(s)	161, 721, 767
Tru1I	TTAA	2 cut(s)	351, 383
Tru9I	TTAA	2 cut(s)	351, 383
TspDTI	ATGAA	3 cut(s)	116, 645, 816
VspI	ATTAAT	1 cut(s)	351
XspI	CTAG	2 cut(s)	726, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.