Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Reverse (-)

16739247 .. 16740546

Gene Structure 1300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATTATTCTTCGATGCATCAGAATGTGATGGGAGTATCTTCATGTTCAACACAAGATTATCAAAACCAGAAGAAACCATTGTCGGCGACTAGGCCAGCTCCACCAGAGCAATCATTAAGATGCCCTCGCTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAACCTCGCTACTTCTGCAAATCTTGTAGGAGATACTGGACCAAGGGTGGAATCCTAAGAAACATCCCAATCGGTGGTGCTTACCGGAAACACAAACGCTCCTCCTCCGCAACCAAAAGCCTCAGAACAACCCCTGAGCCCACGATGACCCATGACGGCAAATCATTCCCAACGGCGAGTTTTGGCTATAATAATAATAACATTAGCAACGAACAGATGGAGCTTGGGTTAGCATATGCCTTGTTGAACAAGCAACCTCTAGGGGTTTCTTCACATCTAGGGTTCGGAAGCTCTCAGTCTCCAATGGCCATGGATGGCGTGTATGGGACCACGAGCCATCAGATGGAGAACACGGGGTATGCGTTTGGAAATGGTGGAGGCGGTATGGAGCAGATGGCGACAAGTGATCCAAACAGGGTTTTGTGGGGATTCCCCTGGCAGATGAACATGGGAGGAGGAAGTGGTCATGGTCATGGTCATGTTGATCAGATTGATTCAGGGAGAGAGATTTGGAGCAGTACTGTCAACTACATTAATACTGGTGCTTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

245

Amino Acids

26.96

Weight (kDa)

9.11

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	38 - 94	5.8e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	257, 526
AciI	CCGC	2 cut(s)	291, 564
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	489
AfaI	GTAC	1 cut(s)	703
AfiI	CCNNNNNNNGG	2 cut(s)	257, 526
AgsI	TTSAA	2 cut(s)	51, 430
AjnI	CCWGG	1 cut(s)	617
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	101, 406, 474
AluI	AGCT	3 cut(s)	101, 406, 474
Alw26I	GTCTC	2 cut(s)	182, 486
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	2 cut(s)	95, 489
AseI	ATTAAT	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	222, 510
AvaII	GGWCC	2 cut(s)	222, 510
BalI	TGGCCA	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	514
BccI	CCATC	6 cut(s)	25, 394, 491, 520, 528, 571
BceAI	ACGGC	2 cut(s)	355, 372
BciT130I	CCWGG	1 cut(s)	619
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	182, 486
BfaI	CTAG	3 cut(s)	93, 443, 461
BfmI	CTRYAG	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	2 cut(s)	222, 510
BmgT120I	GGNCC	2 cut(s)	222, 510
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	3 cut(s)	6, 28, 113
Bpu10I	CCTNAGC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	225, 492, 617
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 526
Bse1I	ACTGG	2 cut(s)	224, 727
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	3 cut(s)	225, 492, 617
BseGI	GGATG	2 cut(s)	246, 502
BseLI	CCNNNNNNNGG	2 cut(s)	257, 526
BseMII	CTCAG	3 cut(s)	309, 319, 491
BseNI	ACTGG	2 cut(s)	224, 727
BseRI	GAGGAG	3 cut(s)	274, 277, 651
BshFI	GGCC	2 cut(s)	97, 491
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	257, 526
BsmAI	GTCTC	2 cut(s)	182, 486
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	97, 491
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	589, 667
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	2 cut(s)	291, 564
BspANI	GGCC	2 cut(s)	97, 491
BspCNI	CTCAG	3 cut(s)	310, 318, 490
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	224, 727
BssECI	CCNNGG	3 cut(s)	225, 492, 617
BssMI	GATC	2 cut(s)	589, 667
BssSI	CACGAG	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	225, 492
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	176, 706
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	4 cut(s)	239, 305, 318, 477
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	246, 502
BstKTI	GATC	2 cut(s)	592, 670
BstMAI	GTCTC	2 cut(s)	182, 486
BstMBI	GATC	2 cut(s)	589, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	97, 491
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	246, 502
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	222, 510
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	7 cut(s)	45, 335, 493, 631, 650, 656, 662
CviJI	RGCY	9 cut(s)	97, 101, 303, 322, 369, 406, 474, 491, 519
CviKI_1	RGCY	9 cut(s)	97, 101, 303, 322, 369, 406, 474, 491, 519
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	4 cut(s)	239, 305, 318, 477
DpnI	GATC	2 cut(s)	591, 669
DpnII	GATC	2 cut(s)	589, 667
EaeI	YGGCCR	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	225, 492
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	222, 510
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	2 cut(s)	225, 492
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	225, 492
FaeI	CATG	7 cut(s)	48, 338, 496, 634, 653, 659, 665
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	7 cut(s)	44, 334, 492, 630, 649, 655, 661
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	667
FokI	GGATG	2 cut(s)	233, 509
FriOI	GRGCYC	1 cut(s)	324
FspBI	CTAG	3 cut(s)	93, 443, 461
HaeIII	GGCC	2 cut(s)	97, 491
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	7 cut(s)	48, 338, 496, 634, 653, 659, 665
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	137, 234, 612, 677
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	5 cut(s)	24, 308, 470, 525, 672
Hpy8I	GTNNAC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	176, 706
HpyCH4V	TGCA	2 cut(s)	19, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	4 cut(s)	239, 305, 318, 477
Hsp92II	CATG	7 cut(s)	48, 338, 496, 634, 653, 659, 665
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	589, 667
LmnI	GCTCC	5 cut(s)	106, 287, 403, 571, 696
LweI	GCATC	3 cut(s)	6, 28, 113
MaeI	CTAG	3 cut(s)	93, 443, 461
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	591, 669
MboI	GATC	2 cut(s)	589, 667
MboII	GAAGA	4 cut(s)	3, 33, 85, 444
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	9 cut(s)	138, 198, 295, 298, 314, 450, 554, 629, 632
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	2 cut(s)	119, 717
MslI	CAYNNNNRTG	4 cut(s)	24, 121, 654, 660
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	589, 667
NlaIII	CATG	7 cut(s)	48, 338, 496, 634, 653, 659, 665
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	234, 612, 677
PflMI	CCANNNNNTGG	2 cut(s)	257, 526
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	222, 510
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
RseI	CAYNNNNRTG	4 cut(s)	24, 121, 654, 660
SaqAI	TTAA	2 cut(s)	119, 717
Sau3AI	GATC	2 cut(s)	589, 667
Sau96I	GGNCC	2 cut(s)	222, 510
ScaI	AGTACT	1 cut(s)	703
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	5 cut(s)	103, 190, 408, 442, 476
SfaNI	GCATC	3 cut(s)	6, 28, 113
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	222, 510
SmiMI	CAYNNNNRTG	4 cut(s)	24, 121, 654, 660
SsiI	CCGC	2 cut(s)	291, 564
SspMI	CTAG	3 cut(s)	93, 443, 461
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	2 cut(s)	225, 492
TaaI	ACNGT	2 cut(s)	176, 706
TaqI	TCGA	1 cut(s)	14
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	234, 612, 677
Tru1I	TTAA	2 cut(s)	119, 717
Tru9I	TTAA	2 cut(s)	119, 717
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	33, 641
Van91I	CCANNNNNTGG	2 cut(s)	257, 526
VpaK11BI	GGWCC	2 cut(s)	222, 510
VspI	ATTAAT	1 cut(s)	717
XspI	CTAG	3 cut(s)	93, 443, 461
ZrmI	AGTACT	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.