Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Forward (+)

11347736 .. 11349782

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCAGCTCAATCACTGGACATGCTGGTCTGCTCAAAATCCCAACAGCAGCAGCAAGACAGGAAGCCAAGGCCTCAGCCAGAACAAGCCCTAAAGTGTCCAAGATGTGACTCCACAAACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCAGGTACTTCTGCAAGTCCTGCAGAAGGTACTGGACCAAAGGTGGCACCCTCAGGAATGTTCCTGTGGGTGGAGGCTGCAGGAAGAACAAGAGATCATCGTCGGCGAAACGAGCTCAGGACCAACCGCTCACACCCAATTCCAACCCACTCCCAGCCCTAGGTTATGACTCAAATGACCTCACCCTTGCATTTGCCAGGCTCCAAAGGCAGCAGTCATGTGGTGGGCAGTTAGGGTTTGATGACCATGACCACATTTCTCTCTTGGGAAATCCCACAAATGCCCCTGATCATAACATTCTTGGAAACCCTAATTCAGCTCCTAGGTTTCTTGATGCACTGAGGACTGGGTTTCTTGAGACCCACAATGGTAATTTCCAGAACTTGTATAACTATGGGTATGGGAATGGGAATTTGGGTGAGGTGGACAATTGTGGTGGCGGAATGGGAATCCACCACCCATTTGAAGAAGGCACCACCAACTCAACCACCACAGCAGTGACAGTTACAACAATGAAGCAAGAACAGTTCAATGCCCAAAGTGAGAGCAGCAACAGAGTTCTGTGGGGGTTTCCATGGCAGATGAACGGTGGAGATCATCATTCAAACATGGTGGGGAATAGTAATCATGAGTATGATTCAGGAAGAGAGAGCTGGAATGGGATTGCTTCATCTTGGCAGCATGGACTTCTGCACACTACTCCCCTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

291

Amino Acids

32.19

Weight (kDa)

8.35

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	29 - 85	1.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccB1I	GGYRCC	2 cut(s)	206, 632
AccBSI	CCGCTC	1 cut(s)	289
AciI	CCGC	2 cut(s)	287, 600
AcsI	RAATTY	1 cut(s)	571
AfaI	GTAC	2 cut(s)	167, 191
AfiI	CCNNNNNNNGG	3 cut(s)	186, 230, 320
AgsI	TTSAA	3 cut(s)	626, 691, 765
AjnI	CCWGG	2 cut(s)	161, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	8, 275, 479, 813
AluI	AGCT	4 cut(s)	8, 275, 479, 813
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	6 cut(s)	49, 52, 237, 370, 708, 838
ApoI	RAATTY	1 cut(s)	571
AspA2I	CCTAGG	2 cut(s)	319, 482
AspS9I	GGNCC	2 cut(s)	195, 280
AsuHPI	GGTGA	2 cut(s)	334, 590
AvaII	GGWCC	2 cut(s)	195, 280
AvrII	CCTAGG	2 cut(s)	319, 482
AxyI	CCTNAGG	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	206, 632
BanII	GRGCYC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	866
Bbv12I	GWGCWC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	6 cut(s)	61, 64, 224, 382, 720, 850
BciT130I	CCWGG	2 cut(s)	163, 358
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	320, 483
BfmI	CTRYAG	3 cut(s)	145, 181, 238
BisI	GCNGC	6 cut(s)	50, 53, 238, 371, 709, 839
BlnI	CCTAGG	2 cut(s)	319, 482
BlsI	GCNGC	6 cut(s)	51, 54, 239, 372, 710, 840
Bme1390I	CCNGG	2 cut(s)	163, 358
Bme18I	GGWCC	2 cut(s)	195, 280
BmgT120I	GGNCC	2 cut(s)	195, 280
BmiI	GGNNCC	3 cut(s)	208, 362, 634
BmrFI	CCNGG	2 cut(s)	163, 358
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	2 cut(s)	75, 276
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	68, 161, 319, 482, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 230, 320
Bse1I	ACTGG	3 cut(s)	21, 197, 511
Bse21I	CCTNAGG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	163, 358
BseDI	CCNNGG	5 cut(s)	68, 161, 319, 482, 734
BseLI	CCNNNNNNNGG	3 cut(s)	186, 230, 320
BseMII	CTCAG	5 cut(s)	89, 170, 226, 290, 491
BseNI	ACTGG	3 cut(s)	21, 197, 511
BseXI	GCAGC	6 cut(s)	61, 64, 224, 382, 720, 850
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	836
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	2 cut(s)	206, 632
BsiHKAI	GWGCWC	1 cut(s)	277
BslI	CCNNNNNNNGG	3 cut(s)	186, 230, 320
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	254, 448, 754
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	2 cut(s)	287, 600
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	5 cut(s)	88, 169, 225, 289, 492
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	3 cut(s)	208, 362, 634
BspMAI	CTGCAG	2 cut(s)	185, 242
BspT107I	GGYRCC	2 cut(s)	206, 632
BspTNI	GGTCTC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	21, 197, 511
BssECI	CCNNGG	5 cut(s)	68, 161, 319, 482, 734
BssMI	GATC	3 cut(s)	254, 448, 754
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	4 cut(s)	68, 319, 482, 734
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	2 cut(s)	163, 358
Bst4CI	ACNGT	3 cut(s)	664, 687, 749
Bst6I	CTCTTC	1 cut(s)	799
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	75, 156, 212, 276, 500
BstDSI	CCRYGG	1 cut(s)	734
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstKTI	GATC	3 cut(s)	257, 451, 757
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	254, 448, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 272, 367
BstNI	CCWGG	2 cut(s)	163, 358
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	161, 356
BstSFI	CTRYAG	3 cut(s)	145, 181, 238
BstV1I	GCAGC	6 cut(s)	61, 64, 224, 382, 720, 850
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	734
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	14, 497, 663
CciI	TCATGA	1 cut(s)	787
Cfr13I	GGNCC	2 cut(s)	195, 280
Csp6I	GTAC	2 cut(s)	166, 190
CspCI	CAANNNNNGTGG	4 cut(s)	577, 612, 753, 788
CviAII	CATG	7 cut(s)	22, 378, 407, 735, 769, 788, 842
CviQI	GTAC	2 cut(s)	166, 190
DdeI	CTNAG	5 cut(s)	75, 156, 212, 276, 500
DpnI	GATC	3 cut(s)	256, 450, 756
DpnII	GATC	3 cut(s)	254, 448, 754
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	799
EarI	CTCTTC	1 cut(s)	799
EciI	GGCGGA	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	4 cut(s)	68, 319, 482, 734
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	195, 280
Eco53kI	GAGCTC	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	161, 356
EcoT14I	CCWWGG	4 cut(s)	68, 319, 482, 734
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	4 cut(s)	68, 319, 482, 734
FaeI	CATG	7 cut(s)	25, 381, 410, 738, 772, 791, 845
FatI	CATG	7 cut(s)	21, 377, 406, 734, 768, 787, 841
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	6 cut(s)	50, 53, 238, 371, 709, 839
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	6 cut(s)	50, 53, 238, 371, 709, 839
FspBI	CTAG	2 cut(s)	320, 483
GluI	GCNGC	6 cut(s)	50, 53, 238, 371, 709, 839
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	7 cut(s)	25, 381, 410, 738, 772, 791, 845
HinfI	GANTC	4 cut(s)	110, 329, 609, 797
HphI	GGTGA	2 cut(s)	334, 590
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188III	TCNNGA	7 cut(s)	214, 278, 491, 515, 538, 788, 801
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	180, 623
HpyCH4III	ACNGT	3 cut(s)	664, 687, 749
HpyCH4V	TGCA	6 cut(s)	174, 183, 240, 350, 497, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 272, 367
HpyF3I	CTNAG	5 cut(s)	75, 156, 212, 276, 500
Hsp92II	CATG	7 cut(s)	25, 381, 410, 738, 772, 791, 845
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	254, 448, 754
LmnI	GCTCC	2 cut(s)	366, 484
Lsp1109I	GCAGC	6 cut(s)	61, 64, 224, 382, 720, 850
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	320, 483
MaeIII	GTNAC	4 cut(s)	107, 131, 658, 664
MalI	GATC	3 cut(s)	256, 450, 756
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	3 cut(s)	254, 448, 754
MboII	GAAGA	3 cut(s)	256, 638, 816
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	5 cut(s)	298, 472, 532, 571, 589
MlyI	GAGTC	2 cut(s)	104, 323
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	7 cut(s)	84, 161, 221, 227, 350, 495, 574
MslI	CAYNNNNRTG	2 cut(s)	656, 792
MspR9I	CCNGG	2 cut(s)	163, 358
MunI	CAATTG	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	163, 358
MwoI	GCNNNNNNNGC	3 cut(s)	180, 272, 367
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	3 cut(s)	254, 448, 754
NlaIII	CATG	7 cut(s)	25, 381, 410, 738, 772, 791, 845
NlaIV	GGNNCC	3 cut(s)	208, 362, 634
NmuCI	GTSAC	2 cut(s)	107, 658
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	787
PceI	AGGCCT	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	609, 797
PkrI	GCNGC	6 cut(s)	51, 54, 239, 372, 710, 840
PleI	GAGTC	2 cut(s)	104, 323
PpsI	GAGTC	2 cut(s)	104, 323
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	161, 356
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	2 cut(s)	161, 356
PspN4I	GGNNCC	3 cut(s)	208, 362, 634
PspPI	GGNCC	2 cut(s)	195, 280
PstI	CTGCAG	2 cut(s)	185, 242
RsaI	GTAC	2 cut(s)	167, 191
RsaNI	GTAC	2 cut(s)	166, 190
RseI	CAYNNNNRTG	2 cut(s)	656, 792
SacI	GAGCTC	1 cut(s)	277
SatI	GCNGC	6 cut(s)	50, 53, 238, 371, 709, 839
Sau3AI	GATC	3 cut(s)	254, 448, 754
Sau96I	GGNCC	2 cut(s)	195, 280
SchI	GAGTC	2 cut(s)	104, 323
ScrFI	CCNGG	2 cut(s)	163, 358
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	3 cut(s)	145, 181, 238
SinI	GGWCC	2 cut(s)	195, 280
SmiMI	CAYNNNNRTG	2 cut(s)	656, 792
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	298, 472, 532, 571, 589
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	287, 600
SspMI	CTAG	2 cut(s)	320, 483
SstI	GAGCTC	1 cut(s)	277
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	161, 356
StyI	CCWWGG	4 cut(s)	68, 319, 482, 734
TaaI	ACNGT	3 cut(s)	664, 687, 749
TasI	AATT	5 cut(s)	298, 472, 532, 571, 589
TfiI	GAWTC	2 cut(s)	609, 797
TscAI	CASTG	3 cut(s)	21, 504, 663
TseFI	GTSAC	2 cut(s)	107, 658
TseI	GCWGC	6 cut(s)	49, 52, 237, 370, 708, 838
Tsp45I	GTSAC	2 cut(s)	107, 658
TspDTI	ATGAA	3 cut(s)	689, 758, 819
TspRI	CASTG	3 cut(s)	21, 504, 663
VpaK11BI	GGWCC	2 cut(s)	195, 280
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	25
XmaJI	CCTAGG	2 cut(s)	319, 482
XspI	CTAG	2 cut(s)	320, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.