Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Forward (+)

6384923 .. 6387489

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAACTATATGGATCCTTCAAGTGGACAACAACACCAGGAAATGTCAGCTCATTCACTGGACATGCTGGTCTGCTCAAAAACCCAACAGCAGCAGCAGCAGCAAGACAGGAAGCCAAGGCCTCAACCAGAGCAGGCTCTCAAGTGCCCAAGATGTGACTCCACAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAGGCCTGCAGAAGGTACTGGACCAAGGGGGGTACTCTGAGAAATGTTCCAGTGGGTGGTGGGTGCAGGAAGAACAAGAGATCCTCCTCCTCATCAAAGAGATCACAAGACCAACAACCCCTCACACCCAATTCCAATAACCCTCTCCCTTCCCTTGGATATGACTCAAATGACCTCACCCTTGCATTTGCTAGGCTCCAAAGACAGTCATGTGGGCAGTTGGGTTTTGATGACCAAGACCACCTTTCTATTTTGGGAAACCCCAACAACACCACTTCCCATGGTGATCATTCTATTCTTGGAAACCATGGCCTTAACATGAACACTACTTCAGCTGCTGCAGCACCTGGGTTTTTTGATGCACTCAGGACTGGGTTTCTTGAAACCCATAATGGTAATTTCCAGAACATGTATTATGGGTTTGGAAATGGGAGCAACAGCAGCAGTTTGGGTGAGGTTGAAAATGGGGCATGTGGAGAAATGGGGCTCCACACATTTGAGGAAATGACCAACTCAACCACCACAGCAGTCACGGTGACAACAATGAAGCAAGAGCTTTGCAATGCAAGAGATCCTCAAAGTGAGAGCAACAGGGTTTTGTGGGGCTTCCCATGGCAGCTCAATGGAGATGCAAACAATAATATGGTTAGTAATGAGTGTGATTCAGGAAGAGTAGAGAGCTGGAATGGTCTTGCTCCATCTTGGCATGGGCTTCTCCACAGTCCCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

319

Amino Acids

35.19

Weight (kDa)

6.78

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	278
AclWI	GGATC	4 cut(s)	8, 21, 297, 788
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	3 cut(s)	215, 239, 256
AfiI	CCNNNNNNNGG	4 cut(s)	23, 234, 278, 377
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	21, 605, 683
AjnI	CCWGG	2 cut(s)	36, 568
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	50, 557, 778, 841, 903
AluI	AGCT	5 cut(s)	50, 557, 778, 841, 903
AlwI	GGATC	4 cut(s)	8, 21, 297, 788
AlwNI	CAGNNNCTG	2 cut(s)	560, 569
AoxI	GGCC	3 cut(s)	119, 225, 532
ApeKI	GCWGC	9 cut(s)	91, 94, 97, 100, 557, 560, 563, 663, 838
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	391, 518, 686, 769
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	711
BbvI	GCAGC	9 cut(s)	103, 106, 109, 112, 544, 547, 575, 675, 850
BccI	CCATC	1 cut(s)	928
BciT130I	CCWGG	2 cut(s)	38, 570
BclI	TGATCA	1 cut(s)	508
BfaI	CTAG	2 cut(s)	414, 950
BfmI	CTRYAG	3 cut(s)	193, 229, 561
BisI	GCNGC	9 cut(s)	92, 95, 98, 101, 558, 561, 564, 664, 839
BlsI	GCNGC	9 cut(s)	93, 96, 99, 102, 559, 562, 565, 665, 840
Bme1390I	CCNGG	2 cut(s)	38, 570
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	15, 419, 710
BmrFI	CCNGG	2 cut(s)	38, 570
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	2 cut(s)	571, 841
BmuI	ACTGGG	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	8 cut(s)	116, 209, 246, 376, 502, 529, 569, 833
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 234, 278, 377
Bse1I	ACTGG	4 cut(s)	63, 245, 272, 598
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	2 cut(s)	38, 570
BseDI	CCNNGG	8 cut(s)	116, 209, 246, 376, 502, 529, 569, 833
BseLI	CCNNNNNNNGG	4 cut(s)	23, 234, 278, 377
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	3 cut(s)	218, 251, 601
BseNI	ACTGG	4 cut(s)	63, 245, 272, 598
BseRI	GAGGAG	2 cut(s)	298, 301
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	9 cut(s)	103, 106, 109, 112, 544, 547, 575, 675, 850
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	3 cut(s)	121, 227, 534
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	4 cut(s)	23, 234, 278, 377
BsmFI	GGGAC	1 cut(s)	930
BsnI	GGCC	3 cut(s)	121, 227, 534
Bsp1286I	GDGCHC	2 cut(s)	149, 711
Bsp143I	GATC	5 cut(s)	13, 302, 323, 508, 793
Bsp19I	CCATGG	3 cut(s)	502, 529, 833
BspANI	GGCC	3 cut(s)	121, 227, 534
BspCNI	CTCAG	3 cut(s)	217, 252, 600
BspLI	GGNNCC	3 cut(s)	15, 419, 710
BspMAI	CTGCAG	2 cut(s)	233, 565
BspPI	GGATC	4 cut(s)	8, 21, 297, 788
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	4 cut(s)	63, 245, 272, 598
BssECI	CCNNGG	8 cut(s)	116, 209, 246, 376, 502, 529, 569, 833
BssMI	GATC	5 cut(s)	13, 302, 323, 508, 793
BssT1I	CCWWGG	7 cut(s)	116, 209, 246, 376, 502, 529, 833
Bst2UI	CCWGG	2 cut(s)	38, 570
Bst4CI	ACNGT	3 cut(s)	429, 757, 944
Bst6I	CTCTTC	1 cut(s)	886
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	135, 229
BstDEI	CTNAG	3 cut(s)	204, 260, 587
BstDSI	CCRYGG	3 cut(s)	502, 529, 833
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstKTI	GATC	5 cut(s)	16, 305, 326, 511, 796
BstMBI	GATC	5 cut(s)	13, 302, 323, 508, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 100, 228, 563, 663
BstNI	CCWGG	2 cut(s)	38, 570
BstNSI	RCATGY	3 cut(s)	67, 634, 696
BstSCI	CCNGG	2 cut(s)	36, 568
BstSFI	CTRYAG	3 cut(s)	193, 229, 561
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	9 cut(s)	103, 106, 109, 112, 544, 547, 575, 675, 850
BstX2I	RGATCY	3 cut(s)	13, 302, 793
BstYI	RGATCY	3 cut(s)	13, 302, 793
BsuRI	GGCC	3 cut(s)	121, 227, 534
BtgI	CCRYGG	3 cut(s)	502, 529, 833
BtsIMutI	CAGTG	2 cut(s)	56, 279
Cac8I	GCNNGC	2 cut(s)	135, 229
CaiI	CAGNNNCTG	2 cut(s)	560, 569
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	214, 238, 255
CviAII	CATG	9 cut(s)	64, 432, 503, 530, 541, 631, 693, 834, 929
CviQI	GTAC	3 cut(s)	214, 238, 255
DdeI	CTNAG	3 cut(s)	204, 260, 587
DpnI	GATC	5 cut(s)	15, 304, 325, 510, 795
DpnII	GATC	5 cut(s)	13, 302, 323, 508, 793
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
Eco130I	CCWWGG	7 cut(s)	116, 209, 246, 376, 502, 529, 833
Eco147I	AGGCCT	2 cut(s)	121, 227
Eco24I	GRGCYC	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	537
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	36, 568
EcoT14I	CCWWGG	7 cut(s)	116, 209, 246, 376, 502, 529, 833
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	7 cut(s)	116, 209, 246, 376, 502, 529, 833
FaeI	CATG	9 cut(s)	67, 435, 506, 533, 544, 634, 696, 837, 932
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	9 cut(s)	63, 431, 502, 529, 540, 630, 692, 833, 928
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	9 cut(s)	92, 95, 98, 101, 558, 561, 564, 664, 839
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	9 cut(s)	92, 95, 98, 101, 558, 561, 564, 664, 839
FspBI	CTAG	2 cut(s)	414, 950
GluI	GCNGC	9 cut(s)	92, 95, 98, 101, 558, 561, 564, 664, 839
HaeIII	GGCC	3 cut(s)	121, 227, 534
Hin1II	CATG	9 cut(s)	67, 435, 506, 533, 544, 634, 696, 837, 932
HinfI	GANTC	3 cut(s)	158, 386, 884
HphI	GGTGA	4 cut(s)	391, 518, 686, 769
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	589, 602, 625, 888
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	27, 228, 381
HpyCH4III	ACNGT	3 cut(s)	429, 757, 944
HpyCH4V	TGCA	9 cut(s)	222, 231, 288, 407, 563, 584, 783, 788, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 100, 228, 563, 663
HpyF3I	CTNAG	3 cut(s)	204, 260, 587
Hsp92II	CATG	9 cut(s)	67, 435, 506, 533, 544, 634, 696, 837, 932
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	13, 302, 323, 508, 793
LmnI	GCTCC	4 cut(s)	423, 654, 714, 922
Lsp1109I	GCAGC	9 cut(s)	103, 106, 109, 112, 544, 547, 575, 675, 850
LweI	GCATC	2 cut(s)	571, 841
MaeI	CTAG	2 cut(s)	414, 950
MaeIII	GTNAC	3 cut(s)	155, 751, 757
MalI	GATC	5 cut(s)	15, 304, 325, 510, 795
MboI	GATC	5 cut(s)	13, 302, 323, 508, 793
MboII	GAAGA	2 cut(s)	304, 903
MflI	RGATCY	3 cut(s)	13, 302, 793
MhlI	GDGCHC	2 cut(s)	149, 711
MluCI	AATT	2 cut(s)	352, 619
MlyI	GAGTC	2 cut(s)	152, 380
MseI	TTAA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	557
MspR9I	CCNGG	2 cut(s)	38, 570
MvaI	CCWGG	2 cut(s)	38, 570
MwoI	GCNNNNNNNGC	5 cut(s)	97, 100, 228, 563, 663
NcoI	CCATGG	3 cut(s)	502, 529, 833
NdeII	GATC	5 cut(s)	13, 302, 323, 508, 793
NlaIII	CATG	9 cut(s)	67, 435, 506, 533, 544, 634, 696, 837, 932
NlaIV	GGNNCC	3 cut(s)	15, 419, 710
NmuCI	GTSAC	3 cut(s)	155, 751, 757
NspI	RCATGY	3 cut(s)	67, 634, 696
PceI	AGGCCT	2 cut(s)	121, 227
PciI	ACATGT	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	9 cut(s)	93, 96, 99, 102, 559, 562, 565, 665, 840
PleI	GAGTC	2 cut(s)	152, 380
PpsI	GAGTC	2 cut(s)	152, 380
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	36, 568
PspGI	CCWGG	2 cut(s)	36, 568
PspN4I	GGNNCC	3 cut(s)	15, 419, 710
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	2 cut(s)	233, 565
PstNI	CAGNNNCTG	2 cut(s)	560, 569
PsuI	RGATCY	3 cut(s)	13, 302, 793
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	3 cut(s)	215, 239, 256
RsaNI	GTAC	3 cut(s)	214, 238, 255
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	9 cut(s)	92, 95, 98, 101, 558, 561, 564, 664, 839
Sau3AI	GATC	5 cut(s)	13, 302, 323, 508, 793
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	152, 380
ScrFI	CCNGG	2 cut(s)	38, 570
SduI	GDGCHC	2 cut(s)	149, 711
SfaNI	GCATC	2 cut(s)	571, 841
SfcI	CTRYAG	3 cut(s)	193, 229, 561
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	352, 619
SseBI	AGGCCT	2 cut(s)	121, 227
SspMI	CTAG	2 cut(s)	414, 950
StuI	AGGCCT	2 cut(s)	121, 227
StyD4I	CCNGG	2 cut(s)	36, 568
StyI	CCWWGG	7 cut(s)	116, 209, 246, 376, 502, 529, 833
TaaI	ACNGT	3 cut(s)	429, 757, 944
TasI	AATT	2 cut(s)	352, 619
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	2 cut(s)	63, 279
TseFI	GTSAC	3 cut(s)	155, 751, 757
TseI	GCWGC	9 cut(s)	91, 94, 97, 100, 557, 560, 563, 663, 838
Tsp45I	GTSAC	3 cut(s)	155, 751, 757
TspDTI	ATGAA	3 cut(s)	17, 557, 782
TspRI	CASTG	2 cut(s)	63, 279
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	232
XceI	RCATGY	3 cut(s)	67, 634, 696
XspI	CTAG	2 cut(s)	414, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.