FvH4_3g33660

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012123
Physical Location & Seq
Reverse (-)
29173030 .. 29175253
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33660.t2

Sequence Viewer

Length: 972 bp
ATGGATCCTTCAAGTGGACAACAACACCACCAGGAAATGCAAGCTCATAATTCCCTAGACATGCTGGTCTGCTCAAAATCCCAGCAGCAATCTGCAGACCAGAGAAAACCAAGGCCACAGCCAGATCAAGCCCTCAAGTGCCCAAGATGTGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGTACTTCTGCAAGTCCTGCAGGAGGTACTGGACCAAAGGCGGCACGCTGCGCAACGTTCCGGTGGGCGGTGGCTGCCGTAAGAACAAGAGATCCTCTTCGAAACGATCGTCGCAAGACCCTCAACAGCCACTCACTCCCAACTCCAACCCGCTGCTCCCAACACTCTCCTACGACTCAAATGACCTCAGTCTTGCCTTTGCTAGGCTCCAGAGGTCATGTGGGCAGATGGGTTTCGATGATCACCTATCCATGTTAGCGAACCCAACCACCAATTCCCAGAGCGACATTTTGTCGAACAGTTCATCTGCGTCACCATCGCCAGGGTTTCTCGATGCTCTGCGGACCGGGTTTCTCGAAACCCATAACAATGGCTTCCCAAACAATTTGTATTATGGGTTTGGATCAAATGGGGGCAACAACATGGTGGGTGAGGTGGAAATGGACAATGGGGTTTGCGGAGAAATGGGGCTGCACCCATATGAGGAATTGAGCAATGTAGCAGCCACAACAGCTGTGACAGTCACAACTATGAAGCAAGAGCTGAGCAGGGATATTGAGACCAACAACAACAAAGTCTTGTGGGGATTTCCATGGCAGATGAACAATGGAGATCATCACAACTTAAACATGGGTGGTGGTGGTGGCGGCAGTGGTGTTCATCATGAGTTTGATAATTCAGGAAGAGAGAGCTGGAATGGACTTGGAAATCCATCTTGGAATGGACTTGGAAATCCATCTTGGCATGGACTTCTTCCCCTAGTTTAA

Protein Analysis

324

Amino Acids

35.48

Weight (kDa)

6.82

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 42 - 99 3.1e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28510 AT3G45610 AT5G60200
fragaria_vesca FvH4_3g33660 FvH4_3g33660
malus_domestica MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica Prupe.6G092600_v2.0.a1
pyrus_communis pycom11g10420
rosa_chinensis RchiOBHm_Chr5g0061151
rosa_laevigata RLG00000035436
rosa_multiflora Rmu_sc0001366.1_g000022
rosa_roxburghii Rroxscaffold_1G00019530
rosa_rugosa Rorug05G0338400
rosa_samantha Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana Rw5G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
Acc16I TGCGCA 1 cut(s) 257
AciI CCGC 6 cut(s) 246, 273, 356, 547, 663, 852
AclI AACGTT 1 cut(s) 261
AclWI GGATC 3 cut(s) 12, 291, 616
AfaI GTAC 2 cut(s) 209, 233
AfiI CCNNNNNNNGG 6 cut(s) 14, 228, 272, 408, 527, 688
AgsI TTSAA 1 cut(s) 12
AhdI GACNNNNNGTC 1 cut(s) 496
AjnI CCWGG 3 cut(s) 30, 203, 526
AjuI GAANNNNNNNTTGG 8 cut(s) 152, 184, 463, 495, 904, 928, 936, 960
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 44, 719, 748, 897
AluI AGCT 4 cut(s) 44, 719, 748, 897
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 3 cut(s) 12, 291, 616
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 6 cut(s) 85, 253, 279, 358, 676, 707
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 237, 549
AsuC2I CCSGG 1 cut(s) 553
AsuHPI GGTGA 3 cut(s) 440, 510, 647
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 237, 549
BaeGI GKGCMC 1 cut(s) 143
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 6 cut(s) 97, 240, 266, 345, 663, 719
BccI CCATC 4 cut(s) 427, 529, 925, 949
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 32, 205, 528
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 3 cut(s) 56, 408, 965
BfmI CTRYAG 3 cut(s) 93, 187, 223
BisI GCNGC 8 cut(s) 86, 247, 254, 280, 359, 677, 708, 853
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 8 cut(s) 87, 248, 255, 281, 360, 678, 709, 854
Bme1390I CCNGG 4 cut(s) 32, 205, 528, 553
Bme18I GGWCC 2 cut(s) 237, 549
BmeRI GACNNNNNGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 237, 549
BmiI GGNNCC 2 cut(s) 6, 413
BmrFI CCNGG 4 cut(s) 32, 205, 528, 553
BmsI GCATC 1 cut(s) 529
BoxI GACNNNNGTC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 4 cut(s) 110, 203, 527, 797
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 228, 272, 408, 527, 688
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 3 cut(s) 32, 205, 528
BseDI CCNNGG 4 cut(s) 110, 203, 527, 797
BseLI CCNNNNNNNGG 6 cut(s) 14, 228, 272, 408, 527, 688
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 3 cut(s) 212, 406, 740
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 6 cut(s) 97, 240, 266, 345, 663, 719
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 662
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 266, 552
BslI CCNNNNNNNGG 6 cut(s) 14, 228, 272, 408, 527, 688
BsmAI GTCTC 1 cut(s) 758
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 758
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
Bsp1720I GCTNAGC 1 cut(s) 749
Bsp19I CCATGG 1 cut(s) 797
BspACI CCGC 6 cut(s) 246, 273, 356, 547, 663, 852
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 3 cut(s) 211, 405, 741
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 2 cut(s) 6, 413
BspMAI CTGCAG 2 cut(s) 97, 227
BspPI GGATC 3 cut(s) 12, 291, 616
BspT104I TTCGAA 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 110, 203, 527, 797
BssMI GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
BssT1I CCWWGG 2 cut(s) 110, 797
Bst2UI CCWGG 3 cut(s) 32, 205, 528
Bst4CI ACNGT 2 cut(s) 506, 727
Bst6I CTCTTC 2 cut(s) 307, 883
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 42, 251
BstDEI CTNAG 3 cut(s) 198, 392, 749
BstDSI CCRYGG 1 cut(s) 797
BstENI CCTNNNNNAGG 2 cut(s) 226, 406
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 7 cut(s) 7, 127, 299, 314, 448, 611, 820
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 4 cut(s) 222, 255, 279, 716
BstNI CCWGG 3 cut(s) 32, 205, 528
BstNSI RCATGY 1 cut(s) 64
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 4 cut(s) 30, 203, 526, 551
BstSFI CTRYAG 3 cut(s) 93, 187, 223
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 6 cut(s) 97, 240, 266, 345, 663, 719
BstX2I RGATCY 2 cut(s) 4, 296
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 2 cut(s) 4, 296
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 797
BtgZI GCGATG 1 cut(s) 507
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 862
Cac8I GCNNGC 2 cut(s) 42, 251
CciI TCATGA 1 cut(s) 868
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 237, 549
CpoI CGGWCCG 1 cut(s) 549
CseI GACGC 1 cut(s) 504
Csp6I GTAC 2 cut(s) 208, 232
CspI CGGWCCG 1 cut(s) 549
CviAII CATG 8 cut(s) 61, 423, 457, 628, 798, 835, 869, 950
CviQI GTAC 2 cut(s) 208, 232
DdeI CTNAG 3 cut(s) 198, 392, 749
DpnI GATC 7 cut(s) 6, 126, 298, 313, 447, 610, 819
DpnII GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
DrdI GACNNNNNNGTC 1 cut(s) 65
DriI GACNNNNNGTC 1 cut(s) 496
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 307, 883
Eam1105I GACNNNNNGTC 1 cut(s) 496
EarI CTCTTC 2 cut(s) 307, 883
Eco130I CCWWGG 2 cut(s) 110, 797
Eco31I GGTCTC 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 237, 549
EcoNI CCTNNNNNAGG 2 cut(s) 226, 406
EcoRII CCWGG 3 cut(s) 30, 203, 526
EcoT14I CCWWGG 2 cut(s) 110, 797
ErhI CCWWGG 2 cut(s) 110, 797
FaeI CATG 8 cut(s) 64, 426, 460, 631, 801, 838, 872, 953
FatI CATG 8 cut(s) 60, 422, 456, 627, 797, 834, 868, 949
FauI CCCGC 1 cut(s) 363
FauNDI CATATG 1 cut(s) 685
FbaI TGATCA 1 cut(s) 445
Fnu4HI GCNGC 8 cut(s) 86, 247, 254, 280, 359, 677, 708, 853
Fsp4HI GCNGC 8 cut(s) 86, 247, 254, 280, 359, 677, 708, 853
FspBI CTAG 3 cut(s) 56, 408, 965
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
GluI GCNGC 8 cut(s) 86, 247, 254, 280, 359, 677, 708, 853
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 266, 552
HgaI GACGC 1 cut(s) 504
HhaI GCGC 1 cut(s) 258
Hin1II CATG 8 cut(s) 64, 426, 460, 631, 801, 838, 872, 953
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 2 cut(s) 152, 380
HpaII CCGG 2 cut(s) 266, 552
HphI GGTGA 3 cut(s) 440, 510, 647
Hpy166II GTNNAC 1 cut(s) 17
Hpy188III TCNNGA 5 cut(s) 415, 536, 560, 869, 885
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 2 cut(s) 506, 727
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 5 cut(s) 40, 95, 216, 225, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 255, 279, 716
HpyF3I CTNAG 3 cut(s) 198, 392, 749
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 8 cut(s) 64, 426, 460, 631, 801, 838, 872, 953
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
LmnI GCTCC 2 cut(s) 366, 417
Lsp1109I GCAGC 6 cut(s) 97, 240, 266, 345, 663, 719
LweI GCATC 1 cut(s) 529
MaeI CTAG 3 cut(s) 56, 408, 965
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 149, 516, 721, 727
MalI GATC 7 cut(s) 6, 126, 298, 313, 447, 610, 819
MboI GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
MboII GAAGA 3 cut(s) 294, 900, 950
MflI RGATCY 2 cut(s) 4, 296
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 5 cut(s) 49, 478, 589, 692, 880
MlyI GAGTC 2 cut(s) 146, 374
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 9 cut(s) 143, 203, 222, 310, 336, 401, 411, 631, 682
MseI TTAA 2 cut(s) 830, 970
MslI CAYNNNNRTG 3 cut(s) 573, 684, 734
MspA1I CMGCKG 2 cut(s) 358, 719
MspI CCGG 2 cut(s) 266, 552
MspR9I CCNGG 4 cut(s) 32, 205, 528, 553
MvaI CCWGG 3 cut(s) 32, 205, 528
MwoI GCNNNNNNNGC 4 cut(s) 222, 255, 279, 716
NciI CCSGG 1 cut(s) 553
NcoI CCATGG 1 cut(s) 797
NdeI CATATG 1 cut(s) 685
NdeII GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
NlaIII CATG 8 cut(s) 64, 426, 460, 631, 801, 838, 872, 953
NlaIV GGNNCC 2 cut(s) 6, 413
NmuCI GTSAC 4 cut(s) 149, 516, 721, 727
NsbI TGCGCA 1 cut(s) 257
NspI RCATGY 1 cut(s) 64
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 868
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PkrI GCNGC 8 cut(s) 87, 248, 255, 281, 360, 678, 709, 854
Ple19I CGATCG 1 cut(s) 314
PleI GAGTC 2 cut(s) 146, 374
PpsI GAGTC 2 cut(s) 146, 374
PshAI GACNNNNGTC 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 30, 203, 526
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 3 cut(s) 30, 203, 526
PspN4I GGNNCC 2 cut(s) 6, 413
PspPI GGNCC 2 cut(s) 237, 549
PstI CTGCAG 2 cut(s) 97, 227
PsuI RGATCY 2 cut(s) 4, 296
PvuI CGATCG 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 209, 233
RsaNI GTAC 2 cut(s) 208, 232
RseI CAYNNNNRTG 3 cut(s) 573, 684, 734
Rsr2I CGGWCCG 1 cut(s) 549
RsrII CGGWCCG 1 cut(s) 549
SaqAI TTAA 2 cut(s) 830, 970
SatI GCNGC 8 cut(s) 86, 247, 254, 280, 359, 677, 708, 853
Sau3AI GATC 7 cut(s) 4, 124, 296, 311, 445, 608, 817
Sau96I GGNCC 2 cut(s) 237, 549
SbfI CCTGCAGG 1 cut(s) 227
SchI GAGTC 2 cut(s) 146, 374
ScrFI CCNGG 4 cut(s) 32, 205, 528, 553
SdaI CCTGCAGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 3 cut(s) 93, 187, 223
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 237, 549
SmiMI CAYNNNNRTG 3 cut(s) 573, 684, 734
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse8387I CCTGCAGG 1 cut(s) 227
Sse9I AATT 5 cut(s) 49, 478, 589, 692, 880
SsiI CCGC 6 cut(s) 246, 273, 356, 547, 663, 852
SspMI CTAG 3 cut(s) 56, 408, 965
StyD4I CCNGG 4 cut(s) 30, 203, 526, 551
StyI CCWWGG 2 cut(s) 110, 797
TaaI ACNGT 2 cut(s) 506, 727
TaiI ACGT 1 cut(s) 264
TaqI TCGA 5 cut(s) 305, 441, 500, 537, 561
TasI AATT 5 cut(s) 49, 478, 589, 692, 880
TauI GCSGC 2 cut(s) 249, 855
Tru1I TTAA 2 cut(s) 830, 970
Tru9I TTAA 2 cut(s) 830, 970
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 4 cut(s) 149, 516, 721, 727
TseI GCWGC 6 cut(s) 85, 253, 279, 358, 676, 707
Tsp45I GTSAC 4 cut(s) 149, 516, 721, 727
TspDTI ATGAA 4 cut(s) 498, 752, 821, 854
TspRI CASTG 1 cut(s) 862
VpaK11BI GGWCC 2 cut(s) 237, 549
XagI CCTNNNNNAGG 2 cut(s) 226, 406
XceI RCATGY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XspI CTAG 3 cut(s) 56, 408, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.