Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Reverse (-)

41098578 .. 41104908

Gene Structure 6331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACGTTTTTGCCCTCGAGCTGTATGCGGAGAGAAAAAGGCCCGAGTTTTCTTTTGTGTTCTAGAAGCCTACATCGACTACAAGCTTCGTTCCATTTTCGGTTTTGTTCTCGGATACAGACGCGGTGTGAAACGGAGTTATCAAGCGTATCGATCAAGCTCTCAGATATAAAGGTTGGGCTGCAAACGAATAGGAGGGGTTTGGTCGCTGGGGTAGCAGAGAGAAGGGGAGAGATCCAAGATTTTCGTCCAAGCTTCGGGTCATTGCGGTGGCAAAAAGAAGGGGAGGGATCGAAGATTGTGGTCGACTTCCGGAGGAAGGTTGAAAAAGAGTGGGGGCGTTTCTCAGTTCGTTGTGTGCTTAATCTAGAAGTTGTACATATTGAAGGAGCGGAGATTTGCTTAAGAATCATAAGCAGTTGTGTCTTTGAAGGGCTGGTTGGATATCTCTGCGAGGTAGGCTTGGGTTCGTTTTGGAAGAGGGTGCAGTGGAGAAACTTCGCCAATGCTGCCTTGAAGAAATTTGAGATTACAAGCATGGTGGAAAAGACCACTAAAGCCTCCCTCAGACGACTAAATCGGCGGAAAGAGAGAGTGAAAGTTGGATCTGCTGCTGTTGGTTACAGAGGTTGGGTTGAAAACGAGTACGAAATCTCACCGTCTACGAGTACGACATCTGGGTTCAGAGTTGAAGCTATTAACTTGCTTCTTTCATTAGTTAATCTAACGAGATTTTGGGAACAGTTTGCAGTCATATTCCTTGAATCTTTTGGATCCAGAGTGTGTAATGCCAAGAGGGCAATGAACTCGAAACTTTCCGGATCCCAAGTTGACATGCTAAGGTACAACATACTAAAATTTCAAGCAAATTGGAGTTCAGCAAACATGGCAAAAGATGGATGGAAACAGACTGAATTGTGCAGTTTTCTTCAGAGTTTTTGTAGCAACCTGGAATGTAAGAGGGAAATCTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

325

Amino Acids

37.2

Weight (kDa)

9.81

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	306, 662
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	2 cut(s)	312, 818
AciI	CCGC	5 cut(s)	28, 124, 268, 392, 583
AclWI	GGATC	7 cut(s)	229, 298, 613, 768, 781, 816, 829
AcsI	RAATTY	2 cut(s)	521, 857
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	4 cut(s)	378, 647, 670, 845
AfiI	CCNNNNNNNGG	2 cut(s)	257, 319
AflII	CTTAAG	1 cut(s)	403
AgsI	TTSAA	8 cut(s)	326, 386, 431, 517, 638, 692, 764, 863
AjnI	CCWGG	1 cut(s)	948
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	21, 86, 160, 255, 695
AluI	AGCT	5 cut(s)	21, 86, 160, 255, 695
AlwI	GGATC	7 cut(s)	229, 298, 613, 768, 781, 816, 829
Ama87I	CYCGRG	2 cut(s)	16, 43
Aor13HI	TCCGGA	2 cut(s)	312, 818
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	181, 509, 611
ApoI	RAATTY	2 cut(s)	521, 857
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	648
AvaI	CYCGRG	2 cut(s)	16, 43
BamHI	GGATCC	2 cut(s)	773, 821
BbvI	GCAGC	3 cut(s)	168, 496, 598
BccI	CCATC	2 cut(s)	890, 894
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 789, 823
BciT130I	CCWGG	1 cut(s)	950
BciVI	GTATCC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	63, 368
BfrI	CTTAAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	797
BisI	GCNGC	3 cut(s)	182, 510, 612
BlsI	GCNGC	3 cut(s)	183, 511, 613
Bme1390I	CCNGG	1 cut(s)	950
BmeT110I	CYCGRG	2 cut(s)	16, 43
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	775, 823
BmrFI	CCNGG	1 cut(s)	950
Bpu10I	CCTNAGC	1 cut(s)	839
Bsa29I	ATCGAT	1 cut(s)	152
BsaWI	WCCGGW	2 cut(s)	312, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 319
Bse3DI	GCAATG	2 cut(s)	263, 807
BseAI	TCCGGA	2 cut(s)	312, 818
BseBI	CCWGG	1 cut(s)	950
BseCI	ATCGAT	1 cut(s)	152
BseGI	GGATG	1 cut(s)	905
BseLI	CCNNNNNNNGG	2 cut(s)	257, 319
BseMI	GCAATG	2 cut(s)	263, 807
BseMII	CTCAG	3 cut(s)	177, 360, 580
BseXI	GCAGC	3 cut(s)	168, 496, 598
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	2 cut(s)	506, 940
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	152
BsiHKCI	CYCGRG	2 cut(s)	16, 43
BsiSI	CCGG	2 cut(s)	313, 819
BslI	CCNNNNNNNGG	2 cut(s)	257, 319
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	2 cut(s)	16, 43
Bsp13I	TCCGGA	2 cut(s)	312, 818
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
BspACI	CCGC	5 cut(s)	28, 124, 268, 392, 583
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	3 cut(s)	176, 359, 579
BspDI	ATCGAT	1 cut(s)	152
BspEI	TCCGGA	2 cut(s)	312, 818
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	775, 823
BspPI	GGATC	7 cut(s)	229, 298, 613, 768, 781, 816, 829
BspTI	CTTAAG	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	263, 807
BsrGI	TGTACA	1 cut(s)	376
BssMI	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	2 cut(s)	660, 744
Bst6I	CTCTTC	1 cut(s)	473
BstAFI	CTTAAG	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	376
BstDEI	CTNAG	4 cut(s)	163, 346, 566, 839
BstF5I	GGATG	1 cut(s)	905
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	6 cut(s)	156, 237, 293, 608, 776, 824
BstMBI	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 459, 509, 797, 887
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	948
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	3 cut(s)	168, 496, 598
BstX2I	RGATCY	4 cut(s)	234, 605, 773, 821
BstYI	RGATCY	4 cut(s)	234, 605, 773, 821
Bsu15I	ATCGAT	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	905
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	152
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	4 cut(s)	377, 646, 669, 844
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	3 cut(s)	538, 835, 886
CviQI	GTAC	4 cut(s)	377, 646, 669, 844
DdeI	CTNAG	4 cut(s)	163, 346, 566, 839
DpnI	GATC	6 cut(s)	155, 236, 292, 607, 775, 823
DpnII	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	598
Eco32I	GATATC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	914
Eco88I	CYCGRG	2 cut(s)	16, 43
EcoRII	CCWGG	1 cut(s)	948
EcoRV	GATATC	1 cut(s)	446
FaeI	CATG	3 cut(s)	541, 838, 889
FatI	CATG	3 cut(s)	537, 834, 885
FblI	GTMKAC	2 cut(s)	306, 662
Fnu4HI	GCNGC	3 cut(s)	182, 510, 612
FokI	GGATG	1 cut(s)	912
Fsp4HI	GCNGC	3 cut(s)	182, 510, 612
FspBI	CTAG	2 cut(s)	63, 368
GluI	GCNGC	3 cut(s)	182, 510, 612
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	313, 819
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	541, 838, 889
HincII	GTYRAC	2 cut(s)	307, 832
HindII	GTYRAC	2 cut(s)	307, 832
HindIII	AAGCTT	2 cut(s)	84, 253
HinfI	GANTC	2 cut(s)	408, 764
HpaII	CCGG	2 cut(s)	313, 819
HphI	GGTGA	1 cut(s)	648
Hpy166II	GTNNAC	3 cut(s)	307, 663, 832
Hpy188I	TCNGA	5 cut(s)	114, 166, 569, 686, 933
Hpy188III	TCNNGA	5 cut(s)	63, 313, 368, 777, 819
Hpy8I	GTNNAC	3 cut(s)	307, 663, 832
HpyAV	CCTTC	5 cut(s)	219, 275, 313, 380, 425
HpyCH4III	ACNGT	2 cut(s)	660, 744
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	4 cut(s)	184, 487, 749, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 459, 509, 797, 887
HpyF3I	CTNAG	4 cut(s)	163, 346, 566, 839
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	541, 838, 889
Kpn2I	TCCGGA	2 cut(s)	312, 818
Kzo9I	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	195, 326, 422, 663, 790, 832, 935, 962
Lsp1109I	GCAGC	3 cut(s)	168, 496, 598
MaeI	CTAG	2 cut(s)	63, 368
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	6 cut(s)	155, 236, 292, 607, 775, 823
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
MboII	GAAGA	4 cut(s)	307, 490, 529, 920
MflI	RGATCY	4 cut(s)	234, 605, 773, 821
MluCI	AATT	4 cut(s)	521, 857, 868, 914
MmeI	TCCRAC	2 cut(s)	421, 583
MroI	TCCGGA	2 cut(s)	312, 818
MseI	TTAA	4 cut(s)	363, 404, 699, 720
MslI	CAYNNNNRTG	1 cut(s)	268
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	2 cut(s)	313, 819
MspR9I	CCNGG	1 cut(s)	950
MvaI	CCWGG	1 cut(s)	950
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	5 cut(s)	215, 459, 509, 797, 887
NdeII	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
NlaIII	CATG	3 cut(s)	541, 838, 889
NlaIV	GGNNCC	2 cut(s)	775, 823
NspI	RCATGY	1 cut(s)	838
PaeR7I	CTCGAG	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	408, 764
PkrI	GCNGC	3 cut(s)	183, 511, 613
Psp6I	CCWGG	1 cut(s)	948
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	2 cut(s)	775, 823
PspPI	GGNCC	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	16
PsuI	RGATCY	4 cut(s)	234, 605, 773, 821
RsaI	GTAC	4 cut(s)	378, 647, 670, 845
RsaNI	GTAC	4 cut(s)	377, 646, 669, 844
RseI	CAYNNNNRTG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	363, 404, 699, 720
SatI	GCNGC	3 cut(s)	182, 510, 612
Sau3AI	GATC	6 cut(s)	153, 234, 290, 605, 773, 821
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	950
Sfr274I	CTCGAG	1 cut(s)	16
SlaI	CTCGAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	16, 403
SmoI	CTYRAG	2 cut(s)	16, 403
Sse9I	AATT	4 cut(s)	521, 857, 868, 914
SsiI	CCGC	5 cut(s)	28, 124, 268, 392, 583
SspMI	CTAG	2 cut(s)	63, 368
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	2 cut(s)	660, 744
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	6 cut(s)	17, 76, 152, 293, 306, 809
TasI	AATT	4 cut(s)	521, 857, 868, 914
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	408, 764
Tru1I	TTAA	4 cut(s)	363, 404, 699, 720
Tru9I	TTAA	4 cut(s)	363, 404, 699, 720
TscAI	CASTG	1 cut(s)	494
TseI	GCWGC	3 cut(s)	181, 509, 611
TspDTI	ATGAA	2 cut(s)	702, 818
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	494
Vha464I	CTTAAG	1 cut(s)	403
XapI	RAATTY	2 cut(s)	521, 857
XbaI	TCTAGA	2 cut(s)	62, 367
XceI	RCATGY	1 cut(s)	838
XhoI	CTCGAG	1 cut(s)	16
XmiI	GTMKAC	2 cut(s)	306, 662
XspI	CTAG	2 cut(s)	63, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.