Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Forward (+)

9569797 .. 9572071

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1110000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATCCTTCAAGTGGACGACAACAACAACAGGAAATGTCAACTCATTCACTGGACATGCTGGTCGGCTCAAAATCCCAACAGCAGCAGCAAGACAGGAAGCCCAGGCCTCAGCCAGAACAAGCTCTAAAATGTCCGAGATGTGACTCCACGAACACAAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCTAGGTACTTCTGCAAGTCCTGCAGAAGGTACTGGACCAAAGGTGGTACCCTCAGGAATGTTCCTGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCGTCTTCGGCGGCGAAGCGAGCTCAGGAGCAACCGCTCACGCCCAATTCCAACCCACTCCCAGGTCTAGGTTATGACTCAAATGACCTCACCCTTGCATTTGCTAGGCTCCAAAGGCAGCAGTCATGTGGTGGGCAGTTAGGGTTTGATGATCATAACATTCTTGGAAACCCTAATTCAGCTCCTGGGTTTCTTGATGGACTCAGGACTGGGTTTCTTGAGTCACACAATGGTAATTTCCAGAACTTGTATAACTATGGGTTTGGGAATGGTAATGGGAATTTGGGTGAGGTGGAAGATTGTGGCGGAGGAATGGGAATCCATCACCCATTTGAAGAAGCCACCACCACCTCAACCACCAACGCAGTGACGGTTACAACAATGAAGCAAGAACTGTTCAATGCACAAAGTGAGAGCAGCAACAGAGTTTTGTGGGGTTTTCCATGGCAGATGAACGGTGGAGATCATCATGCAAACATGGTGGGGAATGGGAATCACGAGTATGATTCAGGAAGAGAGAGCTGGAACGGGATTGCTTCATCTTGGCAGCATGGACTTGTGCACACAACTCCCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

291

Amino Acids

32.03

Weight (kDa)

8.11

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	41 - 97	1.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	328
AciI	CCGC	3 cut(s)	302, 326, 597
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	161, 571
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	3 cut(s)	203, 227, 244
AfiI	CCNNNNNNNGG	5 cut(s)	14, 222, 266, 353, 359
AgsI	TTSAA	3 cut(s)	12, 626, 691
AjnI	CCWGG	3 cut(s)	104, 352, 475
AluBI	AGCT	4 cut(s)	125, 314, 473, 813
AluI	AGCT	4 cut(s)	125, 314, 473, 813
Alw21I	GWGCWC	2 cut(s)	316, 855
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	5 cut(s)	85, 88, 409, 708, 838
ApoI	RAATTY	2 cut(s)	161, 571
Asp718I	GGTACC	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	373, 590, 608
AvaII	GGWCC	1 cut(s)	231
AvrII	CCTAGG	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	855
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	316
BauI	CACGAG	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	316, 855
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	5 cut(s)	97, 100, 421, 720, 850
BccI	CCATC	2 cut(s)	482, 621
BciT130I	CCWGG	3 cut(s)	106, 354, 477
BclI	TGATCA	1 cut(s)	442
BfaI	CTAG	4 cut(s)	198, 359, 396, 866
BfmI	CTRYAG	2 cut(s)	181, 217
BisI	GCNGC	6 cut(s)	86, 89, 303, 410, 709, 839
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	6 cut(s)	87, 90, 304, 411, 710, 840
Bme1390I	CCNGG	3 cut(s)	106, 354, 477
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	6, 244, 401
BmrFI	CCNGG	3 cut(s)	106, 354, 477
BmrI	ACTGGG	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	288
Bpu10I	CCTNAGC	2 cut(s)	111, 315
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	5 cut(s)	104, 197, 352, 476, 734
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 222, 266, 353, 359
Bse1I	ACTGG	3 cut(s)	57, 233, 505
Bse21I	CCTNAGG	1 cut(s)	248
BseBI	CCWGG	3 cut(s)	106, 354, 477
BseDI	CCNNGG	5 cut(s)	104, 197, 352, 476, 734
BseLI	CCNNNNNNNGG	5 cut(s)	14, 222, 266, 353, 359
BseMII	CTCAG	5 cut(s)	125, 206, 262, 329, 508
BseNI	ACTGG	3 cut(s)	57, 233, 505
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	5 cut(s)	97, 100, 421, 720, 850
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	316, 855
BslI	CCNNNNNNNGG	5 cut(s)	14, 222, 266, 353, 359
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	316, 855
Bsp143I	GATC	4 cut(s)	4, 290, 442, 754
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	3 cut(s)	302, 326, 597
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	5 cut(s)	124, 205, 261, 328, 507
BspLI	GGNNCC	3 cut(s)	6, 244, 401
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	57, 233, 505
BssECI	CCNNGG	5 cut(s)	104, 197, 352, 476, 734
BssMI	GATC	4 cut(s)	4, 290, 442, 754
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	2 cut(s)	197, 734
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	3 cut(s)	106, 354, 477
Bst4CI	ACNGT	3 cut(s)	664, 687, 749
Bst6I	CTCTTC	1 cut(s)	799
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	5 cut(s)	111, 192, 248, 315, 494
BstDSI	CCRYGG	1 cut(s)	734
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstKTI	GATC	4 cut(s)	7, 293, 445, 757
BstMBI	GATC	4 cut(s)	4, 290, 442, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 311, 406
BstNI	CCWGG	3 cut(s)	106, 354, 477
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	104, 352, 475
BstSFI	CTRYAG	2 cut(s)	181, 217
BstSLI	GKGCMC	1 cut(s)	855
BstV1I	GCAGC	5 cut(s)	97, 100, 421, 720, 850
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	734
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	50, 663
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	202, 226, 243
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	6 cut(s)	58, 417, 735, 761, 769, 842
CviQI	GTAC	3 cut(s)	202, 226, 243
DdeI	CTNAG	5 cut(s)	111, 192, 248, 315, 494
DpnI	GATC	4 cut(s)	6, 292, 444, 756
DpnII	GATC	4 cut(s)	4, 290, 442, 754
DraIII	CACNNNGTG	1 cut(s)	701
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	799
EarI	CTCTTC	1 cut(s)	799
EciI	GGCGGA	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	197, 734
Eco147I	AGGCCT	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	104, 352, 475
EcoT14I	CCWWGG	2 cut(s)	197, 734
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	197, 734
FaeI	CATG	6 cut(s)	61, 420, 738, 764, 772, 845
FatI	CATG	6 cut(s)	57, 416, 734, 760, 768, 841
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	6 cut(s)	86, 89, 303, 410, 709, 839
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	6 cut(s)	86, 89, 303, 410, 709, 839
FspBI	CTAG	4 cut(s)	198, 359, 396, 866
GluI	GCNGC	6 cut(s)	86, 89, 303, 410, 709, 839
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	61, 420, 738, 764, 772, 845
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	7 cut(s)	146, 368, 492, 512, 609, 784, 797
HphI	GGTGA	3 cut(s)	373, 590, 608
Hpy166II	GTNNAC	3 cut(s)	17, 42, 853
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	8 cut(s)	250, 317, 485, 496, 509, 532, 788, 801
Hpy8I	GTNNAC	3 cut(s)	17, 42, 853
HpyAV	CCTTC	2 cut(s)	18, 216
HpyCH4III	ACNGT	3 cut(s)	664, 687, 749
HpyCH4V	TGCA	7 cut(s)	210, 219, 276, 389, 695, 764, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 311, 406
HpyF3I	CTNAG	5 cut(s)	111, 192, 248, 315, 494
Hsp92II	CATG	6 cut(s)	61, 420, 738, 764, 772, 845
KpnI	GGTACC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	4, 290, 442, 754
LmnI	GCTCC	3 cut(s)	319, 405, 478
Lsp1109I	GCAGC	5 cut(s)	97, 100, 421, 720, 850
MaeI	CTAG	4 cut(s)	198, 359, 396, 866
MaeIII	GTNAC	4 cut(s)	143, 513, 658, 664
MalI	GATC	4 cut(s)	6, 292, 444, 756
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	4 cut(s)	4, 290, 442, 754
MboII	GAAGA	5 cut(s)	288, 292, 599, 638, 816
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	316, 855
MluCI	AATT	5 cut(s)	161, 337, 466, 526, 571
MlyI	GAGTC	4 cut(s)	140, 362, 486, 521
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	120, 197, 257, 263, 389, 574, 593, 652
MslI	CAYNNNNRTG	1 cut(s)	792
MspR9I	CCNGG	3 cut(s)	106, 354, 477
MvaI	CCWGG	3 cut(s)	106, 354, 477
MwoI	GCNNNNNNNGC	3 cut(s)	216, 311, 406
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	4 cut(s)	4, 290, 442, 754
NlaIII	CATG	6 cut(s)	61, 420, 738, 764, 772, 845
NlaIV	GGNNCC	3 cut(s)	6, 244, 401
NmuCI	GTSAC	3 cut(s)	143, 513, 658
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	609, 784, 797
PkrI	GCNGC	6 cut(s)	87, 90, 304, 411, 710, 840
PleI	GAGTC	4 cut(s)	140, 362, 486, 520
PpsI	GAGTC	4 cut(s)	140, 362, 486, 520
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	3 cut(s)	104, 352, 475
PspGI	CCWGG	3 cut(s)	104, 352, 475
PspN4I	GGNNCC	3 cut(s)	6, 244, 401
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	203, 227, 244
RsaNI	GTAC	3 cut(s)	202, 226, 243
RseI	CAYNNNNRTG	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	316
SatI	GCNGC	6 cut(s)	86, 89, 303, 410, 709, 839
Sau3AI	GATC	4 cut(s)	4, 290, 442, 754
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	4 cut(s)	140, 362, 486, 521
ScrFI	CCNGG	3 cut(s)	106, 354, 477
SduI	GDGCHC	2 cut(s)	316, 855
SfcI	CTRYAG	2 cut(s)	181, 217
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	5 cut(s)	161, 337, 466, 526, 571
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	3 cut(s)	302, 326, 597
SspMI	CTAG	4 cut(s)	198, 359, 396, 866
SstI	GAGCTC	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	104, 352, 475
StyI	CCWWGG	2 cut(s)	197, 734
TaaI	ACNGT	3 cut(s)	664, 687, 749
TasI	AATT	5 cut(s)	161, 337, 466, 526, 571
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	3 cut(s)	609, 784, 797
TscAI	CASTG	2 cut(s)	57, 663
TseFI	GTSAC	3 cut(s)	143, 513, 658
TseI	GCWGC	5 cut(s)	85, 88, 409, 708, 838
Tsp45I	GTSAC	3 cut(s)	143, 513, 658
TspDTI	ATGAA	3 cut(s)	689, 758, 819
TspRI	CASTG	2 cut(s)	57, 663
VneI	GTGCAC	1 cut(s)	851
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	161, 571
XceI	RCATGY	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	197
XspI	CTAG	4 cut(s)	198, 359, 396, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.