Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001366.1

Orthogroup ID

OG0012123

Physical Location & Seq

Genomic Coordinates Forward (+)

74916 .. 76579

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001366.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggatccttcaagcggacaacaaaaccaggatatgcaagctcataattccctagacatgttggtcagctcaaaatcccagcagcaaacagaccagagaaaaccaaggccacagccagaacaagccctcaagtgtccaagatgtgactccaccaacaccaagttctgctactacaacaactacagcctcacccagcccaggtacttctgcaagtcctgcaggaggtactggaccaaaggcggcacactgcggaacgttccggtgggcggtggctgccgcaagaacaagagatcctcatcgaagcgatcgtcgcaagatcctcaacaaccactcactcccaactccaacccgctcctcccatcgctctcctacgactccaatgacctcagtcttgcctttgctaggctccagaggtcatgtgggcagttgggttatgatgatcacctaaccatgttaggaaacccaaccaccaattcccacagcgacattttgtcgaacggttcgtctgcatcagcatcgccagggtttctggatgctctccggaccgggtttctagaaacccacaacagcaacagcttccagaacaacttgtattatgggtttggatcaagtggggggaacaccatggtgggtgaggcggaaatggacaatggggtttgcggagaaatggggctgcacccttatgaggaattgagcaatgtagcaaccacaacagctgtgacggtcacaacaatgaagcaagagctgagcagagatattgagaccaacaacaacagagtcttgtgggggtttccatggcagatgaacaatggagatcatcacaacttgaacatgggtggtggtggtggtggtggtggtgctcatcatgagtatgataactcaggaagagagagctggaatggacttgcaaatccatcttggcatggacttcttcccctagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

314

Amino Acids

34.47

Weight (kDa)

6.78

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28510 AT3G45610 AT5G60200
fragaria_vesca	FvH4_3g33660 FvH4_3g33660
malus_domestica	MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica	Prupe.6G092600_v2.0.a1
pyrus_communis	pycom11g10420
rosa_chinensis	RchiOBHm_Chr5g0061151
rosa_laevigata	RLG00000035436
rosa_multiflora	Rmu_sc0001366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00019530
rosa_rugosa	Rorug05G0338400
rosa_samantha	Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana	Rw5G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	8 cut(s)	15, 240, 250, 267, 277, 350, 638, 660
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	4 cut(s)	12, 285, 311, 613
AfaI	GTAC	2 cut(s)	203, 227
AfiI	CCNNNNNNNGG	6 cut(s)	14, 198, 222, 266, 402, 685
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	12, 829
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	3 cut(s)	27, 197, 520
AjuI	GAANNNNNNNTTGG	4 cut(s)	146, 178, 457, 489
AleI	CACNNNNGTG	1 cut(s)	626
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	6 cut(s)	41, 69, 576, 716, 745, 894
AluI	AGCT	6 cut(s)	41, 69, 576, 716, 745, 894
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	4 cut(s)	12, 285, 311, 613
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	82, 273, 673
ArsI	GACNNNNNNTTYG	4 cut(s)	293, 325, 488, 520
AspS9I	GGNCC	2 cut(s)	231, 543
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	181, 434, 644
AvaII	GGWCC	2 cut(s)	231, 543
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	862
BbvI	GCAGC	3 cut(s)	94, 260, 660
BccI	CCATC	2 cut(s)	367, 922
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	3 cut(s)	29, 199, 522
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	4 cut(s)	53, 402, 554, 938
BfmI	CTRYAG	2 cut(s)	181, 217
BisI	GCNGC	5 cut(s)	83, 241, 274, 277, 674
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	5 cut(s)	84, 242, 275, 278, 675
Bme1390I	CCNGG	4 cut(s)	29, 199, 522, 547
Bme18I	GGWCC	2 cut(s)	231, 543
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	231, 543
BmiI	GGNNCC	2 cut(s)	6, 407
BmrFI	CCNGG	4 cut(s)	29, 199, 522, 547
BmsI	GCATC	3 cut(s)	518, 523, 524
BoxI	GACNNNNGTC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	5 cut(s)	104, 197, 521, 624, 794
BsaWI	WCCGGW	2 cut(s)	259, 540
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 198, 222, 266, 402, 685
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	703
Bse8I	GATNNNNATC	1 cut(s)	295
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	29, 199, 522
BseDI	CCNNGG	5 cut(s)	104, 197, 521, 624, 794
BseGI	GGATG	1 cut(s)	538
BseJI	GATNNNNATC	1 cut(s)	295
BseLI	CCNNNNNNNGG	6 cut(s)	14, 198, 222, 266, 402, 685
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	3 cut(s)	400, 737, 894
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	94, 260, 660
BseYI	CCCAGC	2 cut(s)	78, 192
BsgI	GTGCAG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	3 cut(s)	260, 541, 546
BslI	CCNNNNNNNGG	6 cut(s)	14, 198, 222, 266, 402, 685
BsmAI	GTCTC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp13I	TCCGGA	1 cut(s)	540
Bsp143I	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
Bsp1720I	GCTNAGC	1 cut(s)	746
Bsp19I	CCATGG	2 cut(s)	624, 794
BspACI	CCGC	8 cut(s)	15, 240, 250, 267, 277, 350, 638, 660
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	3 cut(s)	399, 738, 893
BspEI	TCCGGA	1 cut(s)	540
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	6, 407
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	4 cut(s)	12, 285, 311, 613
BspTNI	GGTCTC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	5 cut(s)	104, 197, 521, 624, 794
BssMI	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
BssT1I	CCWWGG	3 cut(s)	104, 624, 794
Bst2UI	CCWGG	3 cut(s)	29, 199, 522
Bst4CI	ACNGT	2 cut(s)	500, 724
Bst6I	CTCTTC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	386, 746, 880
BstDSI	CCRYGG	2 cut(s)	624, 794
BstENI	CCTNNNNNAGG	2 cut(s)	220, 400
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	7 cut(s)	7, 293, 308, 319, 442, 608, 817
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 273, 310
BstNI	CCWGG	3 cut(s)	29, 199, 522
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	4 cut(s)	27, 197, 520, 545
BstSFI	CTRYAG	2 cut(s)	181, 217
BstV1I	GCAGC	3 cut(s)	94, 260, 660
BstX2I	RGATCY	3 cut(s)	4, 290, 316
BstYI	RGATCY	3 cut(s)	4, 290, 316
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	624, 794
BtgZI	GCGATG	2 cut(s)	345, 501
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	865
Cfr13I	GGNCC	2 cut(s)	231, 543
CpoI	CGGWCCG	1 cut(s)	543
Csp6I	GTAC	2 cut(s)	202, 226
CspI	CGGWCCG	1 cut(s)	543
CviAII	CATG	8 cut(s)	58, 417, 451, 625, 795, 832, 866, 923
CviQI	GTAC	2 cut(s)	202, 226
DdeI	CTNAG	3 cut(s)	386, 746, 880
DpnI	GATC	7 cut(s)	6, 292, 307, 318, 441, 607, 816
DpnII	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
DrdI	GACNNNNNNGTC	1 cut(s)	62
DriI	GACNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	880
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	880
EciI	GGCGGA	1 cut(s)	653
Eco130I	CCWWGG	3 cut(s)	104, 624, 794
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	231, 543
EcoNI	CCTNNNNNAGG	2 cut(s)	220, 400
EcoRII	CCWGG	3 cut(s)	27, 197, 520
EcoT14I	CCWWGG	3 cut(s)	104, 624, 794
ErhI	CCWWGG	3 cut(s)	104, 624, 794
FaeI	CATG	8 cut(s)	61, 420, 454, 628, 798, 835, 869, 926
FatI	CATG	8 cut(s)	57, 416, 450, 624, 794, 831, 865, 922
FauI	CCCGC	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	83, 241, 274, 277, 674
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	5 cut(s)	83, 241, 274, 277, 674
FspBI	CTAG	4 cut(s)	53, 402, 554, 938
GluI	GCNGC	5 cut(s)	83, 241, 274, 277, 674
GsaI	CCCAGC	2 cut(s)	82, 196
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	3 cut(s)	260, 541, 546
Hin1II	CATG	8 cut(s)	61, 420, 454, 628, 798, 835, 869, 926
HinfI	GANTC	3 cut(s)	146, 374, 777
HpaII	CCGG	3 cut(s)	260, 541, 546
HphI	GGTGA	3 cut(s)	181, 434, 644
Hpy188III	TCNNGA	7 cut(s)	409, 530, 541, 554, 580, 866, 882
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	500, 724
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	37, 210, 219, 509, 676, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 273, 310
HpyF3I	CTNAG	3 cut(s)	386, 746, 880
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	8 cut(s)	61, 420, 454, 628, 798, 835, 869, 926
Kpn2I	TCCGGA	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
LmnI	GCTCC	2 cut(s)	357, 411
Lsp1109I	GCAGC	3 cut(s)	94, 260, 660
LweI	GCATC	3 cut(s)	518, 523, 524
MaeI	CTAG	4 cut(s)	53, 402, 554, 938
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	143, 718, 724
MalI	GATC	7 cut(s)	6, 292, 307, 318, 441, 607, 816
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
MboII	GAAGA	2 cut(s)	897, 923
MflI	RGATCY	3 cut(s)	4, 290, 316
MhlI	GDGCHC	1 cut(s)	862
MluCI	AATT	3 cut(s)	46, 472, 689
MlyI	GAGTC	3 cut(s)	140, 368, 786
MmeI	TCCRAC	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	540
MseI	TTAA	1 cut(s)	943
MslI	CAYNNNNRTG	4 cut(s)	626, 681, 731, 870
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	3 cut(s)	260, 541, 546
MspR9I	CCNGG	4 cut(s)	29, 199, 522, 547
MvaI	CCWGG	3 cut(s)	29, 199, 522
MwoI	GCNNNNNNNGC	3 cut(s)	216, 273, 310
NciI	CCSGG	1 cut(s)	547
NcoI	CCATGG	2 cut(s)	624, 794
NdeII	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
NlaIII	CATG	8 cut(s)	61, 420, 454, 628, 798, 835, 869, 926
NlaIV	GGNNCC	2 cut(s)	6, 407
NmuCI	GTSAC	3 cut(s)	143, 718, 724
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	626
PagI	TCATGA	1 cut(s)	865
PciI	ACATGT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	2 cut(s)	305, 500
PkrI	GCNGC	5 cut(s)	84, 242, 275, 278, 675
Ple19I	CGATCG	1 cut(s)	308
PleI	GAGTC	3 cut(s)	140, 368, 785
PpsI	GAGTC	3 cut(s)	140, 368, 785
PscI	ACATGT	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	3 cut(s)	27, 197, 520
PspFI	CCCAGC	2 cut(s)	78, 192
PspGI	CCWGG	3 cut(s)	27, 197, 520
PspN4I	GGNNCC	2 cut(s)	6, 407
PspPI	GGNCC	2 cut(s)	231, 543
PstI	CTGCAG	1 cut(s)	221
PsuI	RGATCY	3 cut(s)	4, 290, 316
PvuI	CGATCG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	203, 227
RsaNI	GTAC	2 cut(s)	202, 226
RseI	CAYNNNNRTG	4 cut(s)	626, 681, 731, 870
Rsr2I	CGGWCCG	1 cut(s)	543
RsrII	CGGWCCG	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	943
SatI	GCNGC	5 cut(s)	83, 241, 274, 277, 674
Sau3AI	GATC	7 cut(s)	4, 290, 305, 316, 439, 605, 814
Sau96I	GGNCC	2 cut(s)	231, 543
SbfI	CCTGCAGG	1 cut(s)	221
SchI	GAGTC	3 cut(s)	140, 368, 786
ScrFI	CCNGG	4 cut(s)	29, 199, 522, 547
SdaI	CCTGCAGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	3 cut(s)	518, 523, 524
SfcI	CTRYAG	2 cut(s)	181, 217
SinI	GGWCC	2 cut(s)	231, 543
SmiMI	CAYNNNNRTG	4 cut(s)	626, 681, 731, 870
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse8387I	CCTGCAGG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	46, 472, 689
SsiI	CCGC	8 cut(s)	15, 240, 250, 267, 277, 350, 638, 660
SspMI	CTAG	4 cut(s)	53, 402, 554, 938
StyD4I	CCNGG	4 cut(s)	27, 197, 520, 545
StyI	CCWWGG	3 cut(s)	104, 624, 794
TaaI	ACNGT	2 cut(s)	500, 724
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	299, 494
TasI	AATT	3 cut(s)	46, 472, 689
TauI	GCSGC	2 cut(s)	243, 279
Tru1I	TTAA	1 cut(s)	943
Tru9I	TTAA	1 cut(s)	943
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	3 cut(s)	143, 718, 724
TseI	GCWGC	3 cut(s)	82, 273, 673
Tsp45I	GTSAC	3 cut(s)	143, 718, 724
TspDTI	ATGAA	2 cut(s)	749, 818
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	231, 543
XagI	CCTNNNNNAGG	2 cut(s)	220, 400
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	4 cut(s)	53, 402, 554, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.