AT5G60200

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012123
Physical Location & Seq
Forward (+)
24240810 .. 24242523
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60200.1

Sequence Viewer

Length: 774 bp
ATGGATCATTTGTTACAACACCAGGATGTTTTTGGGAATTATAACAAAGCAAGAGAAGCAATGGGACTATCATATTCATCAAACCCAACACCGTTAGATAACGACCAGAAGAAACCTTCTCCTGCAACGGCTGTGACAAGGCCACAGCCTCCGGAGCTAGCTCTCAGGTGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACTCAGCCTCGCTACTTCTGCAAATCATGCCGGAGATATTGGACTAAAGGTGGAACTCTAAGGAACATCCCCGTGGGTGGAGGCTGCCGGAAAAACAAACGATCCACATCTTCGGCTGCAAGAAGCCTCAGAACCACTCCAGAACCGGCGTCCCACGACGGGAAAGTCTTCTCGGCGGCAGGTTTTAATGGGTATAGTAACAATGAACATATTGATCTGAGCTTAGCCTTTGCCTTGCTGAACAAACAACATCCGGGGAGTTCTTCACAGCTAGGGTTTCATTCAGAACTCGGTAGCTCTCATCAGTCTGACATGGAAGGTATGTTTGGGACAAGCCAACAAAAAGAGAACGCTACTTATGCGTTTGGTAACGGGAGCAGCGGTTTGGGTGATCCAAGCAGAGTCTTATGGGGATTTCCATGGCAGATGAATGGAGAGAGCTTTGGAATGATGAACATAGGAGGAGGTGGTGGTCATGTAGATCAGATTGATTCAGGGAGAGAGATGTGGACCAATATGAACTACATTAATTCTGGTGCTTTAATGTAG

Protein Analysis

257

Amino Acids

28.2

Weight (kDa)

8.87

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 55 - 109 6.6e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28510 AT3G45610 AT5G60200
fragaria_vesca FvH4_3g33660 FvH4_3g33660
malus_domestica MD03G1110000.v1.1 MD11G1123400.v1.1
prunus_persica Prupe.6G092600_v2.0.a1
pyrus_communis pycom11g10420
rosa_chinensis RchiOBHm_Chr5g0061151
rosa_laevigata RLG00000035436
rosa_multiflora Rmu_sc0001366.1_g000022
rosa_roxburghii Rroxscaffold_1G00019530
rosa_rugosa Rorug05G0338400
rosa_samantha Rh5AG399100 Rh5BG412300 Rh5CG437100 Rh5DG426600
rosa_wichuraiana Rw5G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 395
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 2 cut(s) 401, 606
AclWI GGATC 3 cut(s) 12, 321, 611
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 302, 384
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 6 cut(s) 157, 161, 447, 496, 522, 666
AluI AGCT 6 cut(s) 157, 161, 447, 496, 522, 666
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 3 cut(s) 12, 321, 611
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 309, 341, 603
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 735
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 296, 328, 615
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 158, 497
BfmI CTRYAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 4 cut(s) 310, 342, 402, 604
BlpI GCTNAGC 1 cut(s) 448
BlsI GCNGC 4 cut(s) 311, 343, 403, 605
Bme1390I CCNGG 2 cut(s) 23, 480
Bme18I GGWCC 1 cut(s) 735
BmgT120I GGNCC 1 cut(s) 735
BmrFI CCNGG 2 cut(s) 23, 480
BmtI GCTAGC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 297, 479, 644
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 384
Bse118I RCCGGY 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 331
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 297, 479, 644
BseGI GGATG 3 cut(s) 31, 291, 475
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 302, 384
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 4 cut(s) 178, 242, 367, 434
BseRI GAGGAG 1 cut(s) 702
BseXI GCAGC 3 cut(s) 296, 328, 615
BshFI GGCC 1 cut(s) 142
BsiSI CCGG 5 cut(s) 152, 256, 313, 371, 479
BslFI GGGAC 3 cut(s) 78, 361, 568
BslI CCNNNNNNNGG 2 cut(s) 302, 384
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 3 cut(s) 78, 361, 568
BsnI GGCC 1 cut(s) 142
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 5 cut(s) 4, 326, 439, 616, 706
Bsp1720I GCTNAGC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 644
BspACI CCGC 2 cut(s) 401, 606
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 4 cut(s) 177, 241, 366, 435
BspEI TCCGGA 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 161
BspPI GGATC 3 cut(s) 12, 321, 611
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 297, 479, 644
BssMI GATC 5 cut(s) 4, 326, 439, 616, 706
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 93, 221
BstACI GRCGYC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 6 cut(s) 164, 228, 284, 353, 443, 448
BstDSI CCRYGG 2 cut(s) 297, 644
BstF5I GGATG 3 cut(s) 31, 291, 475
BstKTI GATC 5 cut(s) 7, 329, 442, 619, 709
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 4, 326, 439, 616, 706
BstMWI GCNNNNNNNGC 5 cut(s) 56, 154, 243, 252, 584
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 21, 478
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 296, 328, 615
BstV2I GAAGAC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 2 cut(s) 297, 644
BtsCI GGATG 3 cut(s) 31, 291, 475
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 735
CseI GACGC 1 cut(s) 363
CviAII CATG 4 cut(s) 252, 538, 645, 701
DdeI CTNAG 6 cut(s) 164, 228, 284, 353, 443, 448
DpnI GATC 5 cut(s) 6, 328, 441, 618, 708
DpnII GATC 5 cut(s) 4, 326, 439, 616, 706
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 4 cut(s) 255, 541, 648, 704
FaqI GGGAC 3 cut(s) 78, 361, 568
FatI CATG 4 cut(s) 251, 537, 644, 700
Fnu4HI GCNGC 4 cut(s) 310, 342, 402, 604
FokI GGATG 3 cut(s) 38, 278, 462
Fsp4HI GCNGC 4 cut(s) 310, 342, 402, 604
FspBI CTAG 2 cut(s) 158, 497
GluI GCNGC 4 cut(s) 310, 342, 402, 604
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 142
HapII CCGG 5 cut(s) 152, 256, 313, 371, 479
HgaI GACGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 4 cut(s) 255, 541, 648, 704
HinfI GANTC 3 cut(s) 182, 627, 716
HpaII CCGG 5 cut(s) 152, 256, 313, 371, 479
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 2 cut(s) 173, 735
Hpy188I TCNGA 5 cut(s) 356, 444, 511, 535, 711
Hpy188III TCNNGA 2 cut(s) 152, 365
Hpy8I GTNNAC 2 cut(s) 173, 735
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 126, 536
HpyCH4III ACNGT 2 cut(s) 93, 221
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 125, 246, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 154, 243, 252, 584
HpyF3I CTNAG 6 cut(s) 164, 228, 284, 353, 443, 448
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 4 cut(s) 255, 541, 648, 704
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 5 cut(s) 4, 326, 439, 616, 706
LmnI GCTCC 2 cut(s) 154, 600
Lsp1109I GCAGC 3 cut(s) 296, 328, 615
MaeI CTAG 2 cut(s) 158, 497
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 5 cut(s) 12, 133, 203, 422, 593
MalI GATC 5 cut(s) 6, 328, 441, 618, 708
MboI GATC 5 cut(s) 4, 326, 439, 616, 706
MboII GAAGA 4 cut(s) 121, 327, 385, 480
MluCI AATT 2 cut(s) 37, 754
MlyI GAGTC 2 cut(s) 176, 636
MnlI CCTC 6 cut(s) 159, 243, 299, 362, 680, 683
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 3 cut(s) 411, 753, 767
MslI CAYNNNNRTG 2 cut(s) 24, 296
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 5 cut(s) 152, 256, 313, 371, 479
MspR9I CCNGG 2 cut(s) 23, 480
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 56, 154, 243, 252, 584
NciI CCSGG 1 cut(s) 480
NcoI CCATGG 1 cut(s) 644
NdeII GATC 5 cut(s) 4, 326, 439, 616, 706
NheI GCTAGC 1 cut(s) 157
NlaIII CATG 4 cut(s) 255, 541, 648, 704
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 716
PkrI GCNGC 4 cut(s) 311, 343, 403, 605
PleI GAGTC 2 cut(s) 176, 635
PpsI GAGTC 2 cut(s) 176, 635
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 735
RseI CAYNNNNRTG 2 cut(s) 24, 296
SaqAI TTAA 3 cut(s) 411, 753, 767
SatI GCNGC 4 cut(s) 310, 342, 402, 604
Sau3AI GATC 5 cut(s) 4, 326, 439, 616, 706
Sau96I GGNCC 1 cut(s) 735
SchI GAGTC 2 cut(s) 176, 636
ScrFI CCNGG 2 cut(s) 23, 480
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 1 cut(s) 735
SmiMI CAYNNNNRTG 2 cut(s) 24, 296
Sse9I AATT 2 cut(s) 37, 754
SsiI CCGC 2 cut(s) 401, 606
SspMI CTAG 2 cut(s) 158, 497
StyD4I CCNGG 2 cut(s) 21, 478
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 2 cut(s) 93, 221
TaiI ACGT 1 cut(s) 178
TasI AATT 2 cut(s) 37, 754
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 3 cut(s) 411, 753, 767
Tru9I TTAA 3 cut(s) 411, 753, 767
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 309, 341, 603
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 6 cut(s) 66, 444, 494, 668, 692, 758
VpaK11BI GGWCC 1 cut(s) 735
VspI ATTAAT 1 cut(s) 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 2 cut(s) 158, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.