Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

12879663 .. 12881587

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30170.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGATTCCAGTGACGAGAATGATGGTTCCTCACGCAATACCATCGCTTCGTCTCTCACATCCAAACCCTAGTCGCGTTGACTTCCTCTGTCGCTGTGCTCCATCAGAAATCCAACCACTTCGGCCTGAACTCTCTTTATCTGTCGGAATTCACGCAATCCCTCATCCAGATAAGGTAGAGAAAGGTGGTGAAGATGCTTTCTTTGTAAGTAGTTATAGAGGTGGAGTCATGGCTGTTGCAGATGGTGTCTCCGGTTGGGCTGAACAAGATGTTGATCCTTCCTTGTTCTCTAAAGAACTTATGGCTAACGCTTCTCGTTTAGTTGATGACCAAGAGGTCAGATATGATCCTGGTTTTCTCATTGACAAAGCTCATACCGCAACTACTTCTAGAGGTTCTGCCACAATTATTCTAGCTATGCTTGAGGAAGTGGGTATTCTCAAAATAGGCAATGTTGGTGACTGTGGACTTAAGCTTCTTCGGGAAGGTCAGATTATTTTTGCCACTGCTCCACAAGAGCACTATTTTGACTGTCCTTACCAACTAAGCTCTGAGGGGTCTGCTCAAACTTATCTAGATGCATCGTTTAGCATAGTGGAAGTACAGAAGGGAGACGTGATCGTGATGGGTTCAGACGGACTTTTCGATAATGTGTTTGATCATGAGATCGTTTCTATAGTGACCAAGCATACAGATGTTGCAGAGTCATCAAGGTTATTAGCTGAAGTGGCGAGTAGCCATTCAAGAGATACAGAGTTTGAGTCTCCATATGCATTAGAAGCAAGAGCCAAGGGGTTTGATGTTCCTCTCTGGAAGAAGGTACTAGGAAAGAAGCTTACAGGAGGGAAGCTTGATGATGTCACTGTGATCGTTGCCAAAGTTGTTAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

298

Amino Acids

32.28

Weight (kDa)

5.12

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	272, 344
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	2 cut(s)	606, 825
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	747
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	8 cut(s)	374, 419, 478, 552, 725, 838, 853, 891
AluI	AGCT	8 cut(s)	374, 419, 478, 552, 725, 838, 853, 891
Alw21I	GWGCWC	2 cut(s)	103, 525
Alw26I	GTCTC	4 cut(s)	59, 256, 609, 771
AlwI	GGATC	2 cut(s)	272, 344
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AsuHPI	GGTGA	2 cut(s)	203, 473
Bbv12I	GWGCWC	2 cut(s)	103, 525
BccI	CCATC	5 cut(s)	19, 52, 112, 239, 622
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	4 cut(s)	59, 256, 609, 771
BfaI	CTAG	5 cut(s)	72, 393, 416, 578, 827
BfmI	CTRYAG	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	354
BmgBI	CACGTC	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	3 cut(s)	187, 571, 593
BpuEI	CTTGAG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	792
BsaWI	WCCGGW	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	61, 166
BseJI	GATNNNNATC	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	103, 525
BsiSI	CCGG	1 cut(s)	255
BsmAI	GTCTC	4 cut(s)	59, 256, 609, 771
BsmBI	CGTCTC	2 cut(s)	59, 609
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	103, 525
Bsp143I	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	664, 893
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	272, 344
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	467, 536, 868
BstAFI	CTTAAG	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	548, 555
BstF5I	GGATG	2 cut(s)	61, 166
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	6 cut(s)	280, 352, 624, 664, 672, 873
BstMAI	GTCTC	4 cut(s)	59, 256, 609, 771
BstMBI	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 731, 782
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	61, 166
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	18
CciI	TCATGA	2 cut(s)	664, 893
Csp6I	GTAC	2 cut(s)	605, 824
CviAII	CATG	3 cut(s)	232, 665, 894
CviQI	GTAC	2 cut(s)	605, 824
DdeI	CTNAG	2 cut(s)	548, 555
DpnI	GATC	6 cut(s)	279, 351, 623, 663, 671, 872
DpnII	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	792
EcoT22I	ATGCAT	2 cut(s)	586, 778
ErhI	CCWWGG	1 cut(s)	792
Esp3I	CGTCTC	2 cut(s)	59, 609
FaeI	CATG	3 cut(s)	235, 668, 897
FatI	CATG	3 cut(s)	231, 664, 893
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	661
FokI	GGATG	2 cut(s)	48, 153
FspBI	CTAG	5 cut(s)	72, 393, 416, 578, 827
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	3 cut(s)	235, 668, 897
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	3 cut(s)	476, 836, 851
HinfI	GANTC	4 cut(s)	7, 228, 707, 764
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	203, 473
Hpy166II	GTNNAC	2 cut(s)	82, 470
Hpy188I	TCNGA	6 cut(s)	109, 149, 344, 495, 556, 637
Hpy188III	TCNNGA	9 cut(s)	170, 393, 485, 578, 625, 665, 747, 814, 894
Hpy8I	GTNNAC	2 cut(s)	82, 470
HpyAV	CCTTC	4 cut(s)	291, 482, 604, 814
HpyCH4III	ACNGT	3 cut(s)	467, 536, 868
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	242, 584, 704, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 731, 782
HpyF3I	CTNAG	2 cut(s)	548, 555
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	235, 668, 897
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
LmnI	GCTCC	2 cut(s)	106, 517
LpnPI	CCDG	8 cut(s)	24, 141, 183, 268, 339, 366, 799, 828
LweI	GCATC	3 cut(s)	187, 571, 593
MaeI	CTAG	5 cut(s)	72, 393, 416, 578, 827
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	4 cut(s)	13, 461, 682, 862
MalI	GATC	6 cut(s)	279, 351, 623, 663, 671, 872
MboI	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
MboII	GAAGA	3 cut(s)	206, 473, 829
MhlI	GDGCHC	2 cut(s)	103, 525
MluCI	AATT	2 cut(s)	150, 408
MlyI	GAGTC	3 cut(s)	237, 716, 773
MmeI	TCCRAC	2 cut(s)	127, 139
Mph1103I	ATGCAT	2 cut(s)	586, 778
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	696
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	380, 731, 782
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
NlaIII	CATG	3 cut(s)	235, 668, 897
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	4 cut(s)	13, 461, 682, 862
NsiI	ATGCAT	2 cut(s)	586, 778
PagI	TCATGA	2 cut(s)	664, 893
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	236, 715, 772
PpsI	GAGTC	3 cut(s)	236, 715, 772
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	606, 825
RsaNI	GTAC	2 cut(s)	605, 824
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	6 cut(s)	277, 349, 621, 661, 669, 870
SchI	GAGTC	3 cut(s)	237, 716, 773
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	103, 525
SfaNI	GCATC	3 cut(s)	187, 571, 593
SfcI	CTRYAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	425, 473
SmoI	CTYRAG	2 cut(s)	425, 473
Sse9I	AATT	2 cut(s)	150, 408
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	5 cut(s)	72, 393, 416, 578, 827
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	3 cut(s)	467, 536, 868
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	648
TasI	AATT	2 cut(s)	150, 408
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	3 cut(s)	18, 514, 871
TseFI	GTSAC	4 cut(s)	13, 461, 682, 862
Tsp45I	GTSAC	4 cut(s)	13, 461, 682, 862
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	3 cut(s)	18, 514, 871
Vha464I	CTTAAG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	150
XbaI	TCTAGA	2 cut(s)	392, 577
XspI	CTAG	5 cut(s)	72, 393, 416, 578, 827
Zsp2I	ATGCAT	2 cut(s)	586, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.