Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041629.1

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1711

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

gttgaaaaaggaggagaagatgctttctttgtgagcacctacaatgggggagttattgctgttgctgatggtgtctctggttgggctgaacagaaggtggatccttcattgtttcctaaagaattgatggcctatgcttcatcttttgtggaagatgtggaggtgaacgataatcctcaggttctgataggaaaagcacatgctgctacctcctctataggttctgctaccgtgattgttgccatgctcgaaaggaatggaattctgaagattgccaatgtcggggattgtggacttagggttattcgtgaaggtaaagtatatttttctacatcaccacaggaacattattttgattgtcccttccaacttagctcacaagctttcggccaaacttaccgtgatgcagtggttagcagtgttgagttggtagaaggagacaccatagtaatgggttcggatggactttttgataatgttttcgaccatgaaattgtttcgacactgacaggatacaaagatgttgcagaggctgcaaaggcattagctaacttggcaagcaatcattccctggatgcgaagtttgattctccctacatcattgaggccagagccagaggttttgaagctcctttttggaagaaaatacttggaatgaagcttacaggtaatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

225

Amino Acids

24.18

Weight (kDa)

4.7

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	95, 108
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	45, 282
AgsI	TTSAA	2 cut(s)	5, 626
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	5 cut(s)	375, 383, 548, 629, 661
AluI	AGCT	5 cut(s)	375, 383, 548, 629, 661
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	79, 432
AlwI	GGATC	2 cut(s)	95, 108
AlwNI	CAGNNNCTG	2 cut(s)	184, 533
AoxI	GGCC	3 cut(s)	129, 388, 606
ApeKI	GCWGC	2 cut(s)	203, 533
ApoI	RAATTY	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	175, 327
AxyI	CCTNAGG	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	190, 520
BccI	CCATC	3 cut(s)	62, 121, 455
BciT130I	CCWGG	1 cut(s)	572
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	79, 432
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	204, 534
BlsI	GCNGC	2 cut(s)	205, 535
Bme1390I	CCNGG	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	3 cut(s)	10, 394, 565
BsaJI	CCNNGG	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 282
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	466, 580
BseLI	CCNNNNNNNGG	2 cut(s)	45, 282
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	27, 202
BseXI	GCAGC	2 cut(s)	190, 520
BshFI	GGCC	3 cut(s)	131, 390, 608
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	45, 282
BsmAI	GTCTC	2 cut(s)	79, 432
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	131, 390, 608
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	131, 390, 608
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	95, 108
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	232, 401
BstAPI	GCANNNNNTGC	2 cut(s)	203, 533
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	177, 296, 371
BstF5I	GGATG	2 cut(s)	466, 580
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	79, 432
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 533, 539, 554
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	190, 520
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	131, 390, 608
BtsCI	GGATG	2 cut(s)	466, 580
BtsI	GCAGTG	2 cut(s)	414, 424
BtsIMutI	CAGTG	3 cut(s)	414, 424, 503
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	2 cut(s)	184, 533
CviAII	CATG	3 cut(s)	200, 244, 488
DdeI	CTNAG	3 cut(s)	177, 296, 371
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	203, 247, 491
FaiI	YATR	7 cut(s)	135, 201, 218, 245, 322, 446, 489
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	199, 243, 487
Fnu4HI	GCNGC	2 cut(s)	204, 534
FokI	GGATG	2 cut(s)	473, 587
Fsp4HI	GCNGC	2 cut(s)	204, 534
GluI	GCNGC	2 cut(s)	204, 534
HaeIII	GGCC	3 cut(s)	131, 390, 608
Hin1II	CATG	3 cut(s)	203, 247, 491
HindIII	AAGCTT	2 cut(s)	381, 659
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	2 cut(s)	175, 327
Hpy166II	GTNNAC	2 cut(s)	166, 293
Hpy188I	TCNGA	3 cut(s)	186, 267, 460
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	166, 293
HpyAV	CCTTC	5 cut(s)	88, 114, 305, 373, 428
HpyCH4III	ACNGT	2 cut(s)	232, 401
HpyCH4V	TGCA	3 cut(s)	407, 527, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 533, 539, 554
HpyF3I	CTNAG	3 cut(s)	177, 296, 371
Hsp92II	CATG	3 cut(s)	203, 247, 491
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	9 cut(s)	63, 164, 326, 495, 557, 584, 622, 628, 651
Lsp1109I	GCAGC	2 cut(s)	190, 520
LweI	GCATC	3 cut(s)	10, 394, 565
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	29, 164, 280, 652
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	3 cut(s)	122, 261, 492
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	8 cut(s)	5, 154, 186, 220, 223, 523, 598, 611
MslI	CAYNNNNRTG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	4 cut(s)	203, 533, 539, 554
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	203, 247, 491
NlaIV	GGNNCC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	205, 535
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	102
PstNI	CAGNNNCTG	2 cut(s)	184, 533
PsuI	RGATCY	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	449
SatI	GCNGC	2 cut(s)	204, 534
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	10, 394, 565
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	122, 261, 492
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	232, 401
TaqI	TCGA	3 cut(s)	249, 483, 500
TasI	AATT	3 cut(s)	122, 261, 492
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	3 cut(s)	414, 424, 510
TseI	GCWGC	2 cut(s)	203, 533
TspDTI	ATGAA	4 cut(s)	96, 129, 504, 671
TspRI	CASTG	3 cut(s)	414, 424, 510
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.