Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Forward (+)

3496521 .. 3499468

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACAGTTCCCACATTCAGGGCCTCAGTTCCTAAGTCTCATCCATTGCTCATTCATTCCCTTTCCTCTGCTCTACCACTCACAGATGAAGCTTCAAAGAAGAAGAGGTTGCTCTCTTGTTGTGCTTCATCAGAACTCAATCCAGTTCGGCCAGAGCTGTCTTTCTGTGTTGGCACTCATCTTATTCCACACCCCAACAAGGTTGAAAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAGCTACAATGGGGGAATTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAGCAGGATGTGGATCCTTCATTGTTCCCTAAAGAATTGATGGCCCATGTTTCATGTCTTGTGGGGGACGAGGAGCAGGTGAACAACAATCCTCAGATTCTGATAGGAAAAGCTCATGCTGCTACCTCTTCTACAGGTTCTGCTACGGTAATTGTTGCCATGCTGGAGAGGAATGGGATTCTGAAAATTGCCAATGTCGGGGATTGTGGACTAAAGGTTATTCGTGAAGGTAAAATTAATTATTCCACATCTCCACAAGAACACTATTTTGATTGTCCATACCAACTTAGTTCGGAGGCTGTTAGCCAAACATACCTTGATGCGATGGTCAGCAGTATTGAGTTGATGGAAGGAGACACCATAGTAACGGGCTCAGATGGACTTTTTGATAATGTTTTCGACCATGAAATTGTTTCTACATTGGCCAGATACAGAAATGTTGCCGAGGCTGCAAAGGCATTAGCTAATTTAGCAAGCAATCATTCATTGGATTCAAACTTTGATTCTCCCTACTCCATGGAGGCTAGATCAAGGGGTTTTGAGGCTCCTTTATGGAAGAAAATTCTTGGAATGAAGCTAACAGGTGGAAAGCCCGATGATATCACTGTGATTGTTGGTCAGGTTGTAAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

308

Amino Acids

32.95

Weight (kDa)

5.27

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	296, 309
AcoI	YGGCCR	2 cut(s)	149, 711
AcsI	RAATTY	1 cut(s)	849
AfiI	CCNNNNNNNGG	3 cut(s)	18, 199, 486
AgsI	TTSAA	3 cut(s)	96, 206, 783
AluBI	AGCT	7 cut(s)	92, 157, 240, 401, 752, 865, 918
AluI	AGCT	7 cut(s)	92, 157, 240, 401, 752, 865, 918
Alw26I	GTCTC	3 cut(s)	42, 280, 636
AlwI	GGATC	2 cut(s)	296, 309
AlwNI	CAGNNNCTG	2 cut(s)	388, 428
AoxI	GGCC	4 cut(s)	21, 149, 330, 711
ApeKI	GCWGC	3 cut(s)	237, 407, 737
ApoI	RAATTY	1 cut(s)	849
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	21, 331
AsuHPI	GGTGA	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	713
BamHI	GGATCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	662
BbvI	GCAGC	3 cut(s)	249, 394, 724
BccI	CCATC	5 cut(s)	263, 322, 607, 628, 659
BcoDI	GTCTC	3 cut(s)	42, 280, 636
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	238, 408, 738
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	3 cut(s)	239, 409, 739
BmgT120I	GGNCC	2 cut(s)	21, 331
BmiI	GGNNCC	2 cut(s)	303, 834
BmsI	GCATC	2 cut(s)	211, 598
BpmI	CTGGAG	1 cut(s)	473
Bpu1102I	GCTNAGC	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	732, 804
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 199, 486
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	732, 804
BseGI	GGATG	2 cut(s)	40, 301
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	18, 199, 486
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	4 cut(s)	39, 279, 395, 675
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	3 cut(s)	249, 394, 724
BshFI	GGCC	4 cut(s)	23, 151, 332, 713
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	18, 199, 486
BsmAI	GTCTC	3 cut(s)	42, 280, 636
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	23, 151, 332, 713
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp143I	GATC	2 cut(s)	301, 815
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	804
BspANI	GGCC	4 cut(s)	23, 151, 332, 713
BspCNI	CTCAG	4 cut(s)	38, 280, 394, 674
BspLI	GGNNCC	2 cut(s)	303, 834
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	296, 309
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	732, 804
BssMI	GATC	2 cut(s)	301, 815
BssT1I	CCWWGG	1 cut(s)	804
Bst4CI	ACNGT	3 cut(s)	7, 436, 895
Bst6I	CTCTTC	2 cut(s)	98, 421
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	6 cut(s)	25, 33, 288, 381, 575, 661
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	40, 301
BstKTI	GATC	2 cut(s)	304, 818
BstMAI	GTCTC	3 cut(s)	42, 280, 636
BstMBI	GATC	2 cut(s)	301, 815
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 737, 743, 758
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	249, 394, 724
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	23, 151, 332, 713
BtgI	CCRYGG	1 cut(s)	804
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	2 cut(s)	40, 301
BtsIMutI	CAGTG	1 cut(s)	891
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	763
CaiI	CAGNNNCTG	2 cut(s)	388, 428
Cfr13I	GGNCC	2 cut(s)	21, 331
CviAII	CATG	6 cut(s)	335, 342, 404, 448, 692, 805
DdeI	CTNAG	6 cut(s)	25, 33, 288, 381, 575, 661
DpnI	GATC	2 cut(s)	303, 817
DpnII	GATC	2 cut(s)	301, 815
EaeI	YGGCCR	2 cut(s)	149, 711
Eam1104I	CTCTTC	2 cut(s)	98, 421
EarI	CTCTTC	2 cut(s)	98, 421
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	6 cut(s)	338, 345, 407, 451, 695, 808
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	6 cut(s)	334, 341, 403, 447, 691, 804
Fnu4HI	GCNGC	3 cut(s)	238, 408, 738
FokI	GGATG	2 cut(s)	27, 308
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	3 cut(s)	238, 408, 738
FspBI	CTAG	1 cut(s)	813
GluI	GCNGC	3 cut(s)	238, 408, 738
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	23, 151, 332, 713
Hin1II	CATG	6 cut(s)	338, 345, 407, 451, 695, 808
HindIII	AAGCTT	2 cut(s)	90, 916
HinfI	GANTC	4 cut(s)	385, 466, 779, 791
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	370, 497
Hpy188I	TCNGA	6 cut(s)	133, 384, 390, 471, 583, 664
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	370, 497
HpyAV	CCTTC	3 cut(s)	315, 509, 632
HpyCH4III	ACNGT	3 cut(s)	7, 436, 895
HpyCH4V	TGCA	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 737, 743, 758
HpyF3I	CTNAG	6 cut(s)	25, 33, 288, 381, 575, 661
Hsp92II	CATG	6 cut(s)	338, 345, 407, 451, 695, 808
Kzo9I	GATC	2 cut(s)	301, 815
LmnI	GCTCC	2 cut(s)	361, 838
Lsp1109I	GCAGC	3 cut(s)	249, 394, 724
LweI	GCATC	2 cut(s)	211, 598
MaeI	CTAG	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	2 cut(s)	303, 817
MboI	GATC	2 cut(s)	301, 815
MboII	GAAGA	5 cut(s)	112, 115, 230, 408, 856
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	662
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	9 cut(s)	252, 323, 438, 474, 522, 526, 696, 754, 849
MluNI	TGGCCA	1 cut(s)	713
Mox20I	TGGCCA	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	407, 737, 743, 758
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	2 cut(s)	301, 815
NlaIII	CATG	6 cut(s)	338, 345, 407, 451, 695, 808
NlaIV	GGNNCC	2 cut(s)	303, 834
NmeAIII	GCCGAG	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	355
PfeI	GAWTC	4 cut(s)	385, 466, 779, 791
PkrI	GCNGC	3 cut(s)	239, 409, 739
PshBI	ATTAAT	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	303, 834
PspPI	GGNCC	2 cut(s)	21, 331
PstNI	CAGNNNCTG	2 cut(s)	388, 428
PsuI	RGATCY	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	238, 408, 738
Sau3AI	GATC	2 cut(s)	301, 815
Sau96I	GGNCC	2 cut(s)	21, 331
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	2 cut(s)	211, 598
SfcI	CTRYAG	1 cut(s)	420
Sse9I	AATT	9 cut(s)	252, 323, 438, 474, 522, 526, 696, 754, 849
SspMI	CTAG	1 cut(s)	813
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	7, 436, 895
TaqI	TCGA	1 cut(s)	687
TasI	AATT	9 cut(s)	252, 323, 438, 474, 522, 526, 696, 754, 849
TfiI	GAWTC	4 cut(s)	385, 466, 779, 791
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	898
TseI	GCWGC	3 cut(s)	237, 407, 737
TspDTI	ATGAA	8 cut(s)	44, 102, 117, 297, 330, 708, 762, 875
TspRI	CASTG	1 cut(s)	898
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	849
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.