Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Forward (+)

12162046 .. 12164720

Gene Structure 2675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTAGTCTCTTGTGCTCCATCAGCAACCAAGCGAGTTCGGGAAGAGCTGTCTTTCTGTGTTGGAACCCATCTTATTCCACACCCCAGCAAGAGTTGGTATTTGGAAAGGTTGAAAAAGGAGGGGGAAGATGCTTTCTTTGTGAGCACCTACAATGGGGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAACAGAACGTGGATCCTTCATTGTTTCCTAAAGAATTGATGGCCTATGCTTCATCTTTTGTGGAAGATGTGGAGGTGAACGATAATCCTCAGGTTCTGATAGGAAAAGCACATGCTGCTACCTCCTCTATAGGTTCTGCTACCGTGATTGTTGCCATGCTCGAGAGGAATGGAATTCTGAAGATTGCCAATGTCGGGGATTGTGGACTTAGGGTTATTCGTGAAGGTAAAGTATATTTTTCTACATCACCACAGGAACATTATTTTGATTGTCCCTTCCAACTTAGCTCACAAGCTTTCGGCCAAACTTACCGTGATGCAGTGGTTAGCAGTATTGAGTTGATAGAAGGAGACACCATAGTAATGGGTTCGGATGGACTTTTTGATAATGTTTTCGACCATGAAATTGTTTCGACACTGACAGGATACAGAGATGTTGCAGAGGCTGCAAAGGCATTAGCTAATTTGGCAAGCAATCATTCGCTGGATTCGAAGTTTGATTCTCCCTACATCATTGAGGCCAGAGCCAGAGGTTTTGAAGCTCCTTTTTGGAAGAAAATACTTGGAATGAAGCTTACAGGTGGAAAGCCAGATGATATCACTGTGGTAGTTGGTCAGGTTGTGAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

276

Amino Acids

29.93

Weight (kDa)

5.01

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	156, 393
AgsI	TTSAA	2 cut(s)	115, 737
AluBI	AGCT	7 cut(s)	49, 486, 494, 659, 740, 772, 825
AluI	AGCT	7 cut(s)	49, 486, 494, 659, 740, 772, 825
Alw21I	GWGCWC	2 cut(s)	19, 149
Alw26I	GTCTC	3 cut(s)	13, 190, 543
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	2 cut(s)	295, 644
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	240, 499, 717
ApeKI	GCWGC	2 cut(s)	314, 644
ApoI	RAATTY	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	286, 438
AsuII	TTCGAA	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	19, 149
BbvI	GCAGC	2 cut(s)	301, 631
BccI	CCATC	5 cut(s)	28, 78, 173, 232, 566
BciVI	GTATCC	1 cut(s)	617
BcoDI	GTCTC	3 cut(s)	13, 190, 543
BfmI	CTRYAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	2 cut(s)	315, 645
BlsI	GCNGC	2 cut(s)	316, 646
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	67, 213
BmsI	GCATC	2 cut(s)	121, 505
Bpu14I	TTCGAA	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 393
Bse21I	CCTNAGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	156, 393
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	301, 631
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	3 cut(s)	242, 501, 719
BsiHKAI	GWGCWC	2 cut(s)	19, 149
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	156, 393
BsmAI	GTCTC	3 cut(s)	13, 190, 543
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	242, 501, 719
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	19, 149
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	242, 501, 719
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	67, 213
BspPI	GGATC	2 cut(s)	206, 219
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	689
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	343, 512, 802
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	314, 644
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	288, 407, 482
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	3 cut(s)	13, 190, 543
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 314, 644, 650, 665
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	301, 631
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	3 cut(s)	242, 501, 719
BtsCI	GGATG	1 cut(s)	577
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	525, 614, 798
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	2 cut(s)	295, 644
CviAII	CATG	3 cut(s)	311, 355, 599
DdeI	CTNAG	3 cut(s)	288, 407, 482
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	796
FaeI	CATG	3 cut(s)	314, 358, 602
FaiI	YATR	8 cut(s)	246, 312, 329, 356, 433, 557, 600, 829
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	3 cut(s)	310, 354, 598
Fnu4HI	GCNGC	2 cut(s)	315, 645
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	315, 645
GluI	GCNGC	2 cut(s)	315, 645
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	242, 501, 719
Hin1II	CATG	3 cut(s)	314, 358, 602
HindIII	AAGCTT	2 cut(s)	492, 770
HinfI	GANTC	2 cut(s)	686, 698
HphI	GGTGA	2 cut(s)	286, 438
Hpy166II	GTNNAC	2 cut(s)	277, 404
Hpy188I	TCNGA	3 cut(s)	297, 378, 571
Hpy188III	TCNNGA	3 cut(s)	41, 361, 419
Hpy8I	GTNNAC	2 cut(s)	277, 404
HpyAV	CCTTC	4 cut(s)	225, 416, 484, 539
HpyCH4III	ACNGT	3 cut(s)	343, 512, 802
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	518, 638, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 314, 644, 650, 665
HpyF3I	CTNAG	3 cut(s)	288, 407, 482
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	314, 358, 602
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	22, 745
Lsp1109I	GCAGC	2 cut(s)	301, 631
LweI	GCATC	2 cut(s)	121, 505
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	56, 140, 275, 391, 763
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	19, 149
MluCI	AATT	4 cut(s)	233, 372, 603, 661
MmeI	TCCRAC	2 cut(s)	43, 502
MnlI	CCTC	9 cut(s)	115, 265, 297, 331, 334, 357, 634, 709, 722
MslI	CAYNNNNRTG	1 cut(s)	560
MwoI	GCNNNNNNNGC	5 cut(s)	23, 314, 644, 650, 665
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	314, 358, 602
NlaIV	GGNNCC	2 cut(s)	67, 213
NspI	RCATGY	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	686
PfeI	GAWTC	2 cut(s)	686, 698
PkrI	GCNGC	2 cut(s)	316, 646
PspFI	CCCAGC	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	67, 213
PstNI	CAGNNNCTG	2 cut(s)	295, 644
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	2 cut(s)	315, 645
Sau3AI	GATC	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	19, 149
SfaNI	GCATC	2 cut(s)	121, 505
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	233, 372, 603, 661
TaaI	ACNGT	3 cut(s)	343, 512, 802
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	360, 594, 611, 689
TasI	AATT	4 cut(s)	233, 372, 603, 661
TfiI	GAWTC	2 cut(s)	686, 698
TscAI	CASTG	3 cut(s)	525, 621, 805
TseI	GCWGC	2 cut(s)	314, 644
TspDTI	ATGAA	4 cut(s)	207, 240, 615, 782
TspRI	CASTG	3 cut(s)	525, 621, 805
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.