Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

4428902 .. 4430879

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1055500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACGTGCAACTTAAAGATAGACACATGTATTATCCCTAGAAAAAGCTACAATGGAGGAGTTCTTGCTATTGCTGATGGTGTTTCTGGTTGTGCTGAACAGGATGTGGATCCTTCTTCGTTCCCCAAAGAATTGATGGCCAATGCCTCAAATTTTGTGGGAGATGAGGAGGTGAACAACAATCCTCATATTCTGATACGAAAGGCACATGCTTATACTTCCTCGATAGGTTCTGCTACGGTAATGATTGCCGTGCTGGAGAGGAATGGGACTCTGAAAATTGCCAATGTCGGGGATTGCGGATTAAGGGTTATTCGTGAAGGTAAAATTAATTTTTCCACATCTCCACAAGAACACTATTTCGATTGTCCATACCAACTTTATTCGGAGATCGTTGGCCAAACGTACCATGATGCGATGGTTTCCAATGTTGAGCTGATGGAAGGAGACACCGTAGTCATGGGCTCCGACGGATTTTTTGACAACGTTTTGCACCATGAAATAGTTTCGATAGTGGCCGGATACAGAGACGTTGCTGAGGCCGGTATGTATTTCCGAAATCAAACAAATGTGAGAGGGTCAGCTAGCGCATTAGCTAATTGGGCAAACAATCATTCACTGGATTCAAACTTTGATTCTCCCTACTCCATGGAGGCTAGATCAAGGGGTTTCGAGCCTCCTTTATGGAAGAAGATTCTCGGAATGAAGCTTACAGGCACGACCTATCTCGGTTTATACTATGACGATAAGGACCTCAATCTTCGATGTCATGACGGACCTGAGTTTTCTGTTGTGCAGGTGGAAAGCCGGATGATATCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

275

Amino Acids

30.21

Weight (kDa)

5.05

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	787
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	787
AciI	CCGC	1 cut(s)	300
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	2 cut(s)	104, 117
AcoI	YGGCCR	3 cut(s)	138, 397, 516
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	627
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	5 cut(s)	48, 436, 584, 596, 709
AluI	AGCT	5 cut(s)	48, 436, 584, 596, 709
Alw26I	GTCTC	2 cut(s)	441, 522
AlwI	GGATC	2 cut(s)	104, 117
AoxI	GGCC	4 cut(s)	138, 397, 516, 540
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	751, 776
AsuHPI	GGTGA	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	584
AvaII	GGWCC	2 cut(s)	751, 776
BalI	TGGCCA	2 cut(s)	140, 399
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	467
BbvCI	CCTCAGC	1 cut(s)	537
BccI	CCATC	4 cut(s)	71, 130, 412, 433
BceAI	ACGGC	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	2 cut(s)	441, 522
BfaI	CTAG	3 cut(s)	39, 585, 657
BfuAI	ACCTGC	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	751, 776
BmgBI	CACGTC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	751, 776
BmiI	GGNNCC	2 cut(s)	111, 466
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	109, 816
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	528, 771
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	2 cut(s)	72, 182
BsgI	GTGCAG	1 cut(s)	815
BshFI	GGCC	4 cut(s)	140, 399, 518, 542
BsiSI	CCGG	3 cut(s)	519, 543, 808
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	441, 522
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	140, 399, 518, 542
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	3 cut(s)	109, 390, 659
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	4 cut(s)	140, 399, 518, 542
BspCNI	CTCAG	2 cut(s)	529, 772
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	111, 466
BspMI	ACCTGC	1 cut(s)	787
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	2 cut(s)	104, 117
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	3 cut(s)	109, 390, 659
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	2 cut(s)	241, 454
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	2 cut(s)	537, 780
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	109, 816
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	112, 393, 662
BstMAI	GTCTC	2 cut(s)	441, 522
BstMBI	GATC	3 cut(s)	109, 390, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNSI	RCATGY	2 cut(s)	30, 212
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	4 cut(s)	140, 399, 518, 542
BtgI	CCRYGG	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	109, 816
BtsIMutI	CAGTG	1 cut(s)	617
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	586
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	751, 776
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	7 cut(s)	27, 209, 410, 460, 497, 649, 770
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	537, 780
DpnI	GATC	3 cut(s)	111, 392, 661
DpnII	GATC	3 cut(s)	109, 390, 659
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	3 cut(s)	138, 397, 516
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	816
Eco47I	GGWCC	2 cut(s)	751, 776
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	7 cut(s)	30, 212, 413, 463, 500, 652, 773
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	7 cut(s)	26, 208, 409, 459, 496, 648, 769
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	467
FspBI	CTAG	3 cut(s)	39, 585, 657
GlaI	GCGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	4 cut(s)	140, 399, 518, 542
HapII	CCGG	3 cut(s)	519, 543, 808
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	7 cut(s)	30, 212, 413, 463, 500, 652, 773
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	271, 623, 635, 694
HpaII	CCGG	3 cut(s)	519, 543, 808
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	7 cut(s)	195, 276, 388, 469, 557, 701, 824
Hpy188III	TCNNGA	2 cut(s)	317, 770
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	123, 314, 437
HpyCH4III	ACNGT	2 cut(s)	241, 454
HpyCH4IV	ACGT	4 cut(s)	5, 404, 486, 531
HpyCH4V	TGCA	3 cut(s)	9, 493, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	537, 780
HpySE526I	ACGT	4 cut(s)	5, 404, 486, 531
Hsp92II	CATG	7 cut(s)	30, 212, 413, 463, 500, 652, 773
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	109, 390, 659
LmnI	GCTCC	1 cut(s)	470
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	3 cut(s)	39, 585, 657
MaeII	ACGT	4 cut(s)	5, 404, 486, 531
MalI	GATC	3 cut(s)	111, 392, 661
MboI	GATC	3 cut(s)	109, 390, 659
MboII	GAAGA	4 cut(s)	108, 700, 703, 752
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	467
MlsI	TGGCCA	2 cut(s)	140, 399
MluCI	AATT	6 cut(s)	131, 151, 279, 327, 331, 598
MluNI	TGGCCA	2 cut(s)	140, 399
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	492
Mox20I	TGGCCA	2 cut(s)	140, 399
MscI	TGGCCA	2 cut(s)	140, 399
MseI	TTAA	3 cut(s)	14, 305, 330
Msp20I	TGGCCA	2 cut(s)	140, 399
MspI	CCGG	3 cut(s)	519, 543, 808
MwoI	GCNNNNNNNGC	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	3 cut(s)	109, 390, 659
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	7 cut(s)	30, 212, 413, 463, 500, 652, 773
NlaIV	GGNNCC	2 cut(s)	111, 466
NspI	RCATGY	2 cut(s)	30, 212
PagI	TCATGA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	787
PciI	ACATGT	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	623, 635, 694
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	751
PscI	ACATGT	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	111, 466
PspPI	GGNCC	2 cut(s)	751, 776
PspPPI	RGGWCCY	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	14, 305, 330
Sau3AI	GATC	3 cut(s)	109, 390, 659
Sau96I	GGNCC	2 cut(s)	751, 776
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	2 cut(s)	751, 776
Sse9I	AATT	6 cut(s)	131, 151, 279, 327, 331, 598
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	3 cut(s)	39, 585, 657
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	241, 454
TaiI	ACGT	4 cut(s)	8, 407, 489, 534
TaqI	TCGA	5 cut(s)	224, 363, 509, 672, 763
TasI	AATT	6 cut(s)	131, 151, 279, 327, 331, 598
TfiI	GAWTC	3 cut(s)	623, 635, 694
Tru1I	TTAA	3 cut(s)	14, 305, 330
Tru9I	TTAA	3 cut(s)	14, 305, 330
TscAI	CASTG	1 cut(s)	624
TspDTI	ATGAA	2 cut(s)	513, 719
TspGWI	ACGGA	2 cut(s)	486, 789
TspRI	CASTG	1 cut(s)	624
VpaK11BI	GGWCC	2 cut(s)	751, 776
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	30, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	3 cut(s)	39, 585, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.