Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

77615558 .. 77617978

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAGTTCCCATTTTCAGGGCGTCAGTTCCCAAGTCTCACACAATCATTCACTCCCTTTTTTCTACTTCATTTACTGATGAAACTTCAAAGAAGAGAAGGATGTTAGTCTCTTGTGCTCCATCAGCAACCAAGGCAGTTCGGGAAGAGCTGTCTTTCTGTGTTGGAACTCATCTTATTCCACACCCCAGCAAGGTTGAAAAAGGAGGGGAAGATGCTTTCTTTGTGAGCACCTACAATGGGGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAACAGAATGTGGATCCTTCATTGTTTCCTAAAGAATTGATGGCCTATGCTTCATCTTTTGTGGAAGATGTGGAGGTGAATGATAATCCTCAGGTTCTGATAGGAAAAGCACATGCTGCTACCTCCTCTATAGGTTCTGCTACCGTGATTGTCGCTATGCTGGAGAGGAATGGAATTCTGAAGATCGCCAATGTCGGGGATTGTGGACTTAGGGTTTTTCGTGAAGGTAAATTATATTTTTCTACATCACCACAGGAACATTATTTTGATTGTCCCTTCCAACTTAGCTCACAAGCTTTTGGCCAAACTTACCGTGATGCAGTGGTTAGCAGTGTTGAGTTGGTAGAAGGAGACACCATAGTAATGGGTTCGGATGGACTTTTTGATAATGTTTTCGACCATGAAATTGTATCAACACTGACAGGATACAAAGATGTTGCAGAGGCTGCAAAGGCATTAGCTAATTTGGCAAGCAATCATTCCCTGGATTCGAAGTTTGATTCTCCCTACATCATTGAGGCCAGAGCCAGAGGTTTTGAAGCTCCTTTATGGAAGAAAATACTAGGAATGAAGCTTACAGGTGGAAAGCCAGATGATATCACTGTGGTGGTTGGTCAGGTTGTGAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

305

Amino Acids

32.75

Weight (kDa)

5.39

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	290, 303
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
AgsI	TTSAA	3 cut(s)	90, 200, 821
AjnI	CCWGG	1 cut(s)	765
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	7 cut(s)	151, 570, 578, 743, 824, 856, 909
AluI	AGCT	7 cut(s)	151, 570, 578, 743, 824, 856, 909
Alw21I	GWGCWC	2 cut(s)	121, 233
Alw26I	GTCTC	4 cut(s)	42, 115, 274, 627
AlwI	GGATC	2 cut(s)	290, 303
AlwNI	CAGNNNCTG	2 cut(s)	379, 728
AoxI	GGCC	3 cut(s)	324, 583, 801
ApeKI	GCWGC	2 cut(s)	398, 728
ApoI	RAATTY	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	370, 522
AsuII	TTCGAA	1 cut(s)	773
AxyI	CCTNAGG	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	585
BamHI	GGATCC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	121, 233
BbvI	GCAGC	2 cut(s)	385, 715
BccI	CCATC	4 cut(s)	130, 257, 316, 650
BciT130I	CCWGG	1 cut(s)	767
BciVI	GTATCC	1 cut(s)	701
BcoDI	GTCTC	4 cut(s)	42, 115, 274, 627
BfaI	CTAG	1 cut(s)	845
BfmI	CTRYAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	701
BisI	GCNGC	2 cut(s)	399, 729
BlsI	GCNGC	2 cut(s)	400, 730
Bme1390I	CCNGG	1 cut(s)	767
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	767
BmsI	GCATC	2 cut(s)	205, 589
BpmI	CTGGAG	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	132, 765
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	132, 765
BseGI	GGATG	2 cut(s)	108, 661
BseLI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	385, 715
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	3 cut(s)	326, 585, 803
BsiHKAI	GWGCWC	2 cut(s)	121, 233
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
BsmAI	GTCTC	4 cut(s)	42, 115, 274, 627
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	3 cut(s)	326, 585, 803
Bsp119I	TTCGAA	1 cut(s)	773
Bsp1286I	GDGCHC	2 cut(s)	121, 233
Bsp143I	GATC	2 cut(s)	295, 465
BspANI	GGCC	3 cut(s)	326, 585, 803
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	132, 765
BssMI	GATC	2 cut(s)	295, 465
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	3 cut(s)	427, 596, 886
Bst6I	CTCTTC	2 cut(s)	89, 141
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	398, 728
BstBI	TTCGAA	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	3 cut(s)	372, 491, 566
BstF5I	GGATG	2 cut(s)	108, 661
BstKTI	GATC	2 cut(s)	298, 468
BstMAI	GTCTC	4 cut(s)	42, 115, 274, 627
BstMBI	GATC	2 cut(s)	295, 465
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 134, 398, 728, 734, 749
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	385, 715
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	326, 585, 803
BtsCI	GGATG	2 cut(s)	108, 661
BtsI	GCAGTG	2 cut(s)	609, 619
BtsIMutI	CAGTG	4 cut(s)	609, 619, 698, 882
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	2 cut(s)	379, 728
CseI	GACGC	1 cut(s)	12
CviAII	CATG	2 cut(s)	395, 683
DdeI	CTNAG	3 cut(s)	372, 491, 566
DpnI	GATC	2 cut(s)	297, 467
DpnII	GATC	2 cut(s)	295, 465
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	2 cut(s)	89, 141
EarI	CTCTTC	2 cut(s)	89, 141
Eco130I	CCWWGG	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	765
EcoRV	GATATC	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	398, 686
FaiI	YATR	9 cut(s)	330, 396, 413, 440, 517, 641, 684, 832, 913
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	2 cut(s)	394, 682
Fnu4HI	GCNGC	2 cut(s)	399, 729
FokI	GGATG	2 cut(s)	115, 668
Fsp4HI	GCNGC	2 cut(s)	399, 729
FspBI	CTAG	1 cut(s)	845
GluI	GCNGC	2 cut(s)	399, 729
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	326, 585, 803
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	398, 686
HindIII	AAGCTT	2 cut(s)	576, 854
HinfI	GANTC	2 cut(s)	770, 782
HphI	GGTGA	2 cut(s)	370, 522
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	3 cut(s)	381, 462, 655
Hpy188III	TCNNGA	2 cut(s)	143, 503
Hpy8I	GTNNAC	1 cut(s)	488
HpyAV	CCTTC	5 cut(s)	93, 309, 500, 568, 623
HpyCH4III	ACNGT	3 cut(s)	427, 596, 886
HpyCH4V	TGCA	3 cut(s)	602, 722, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 134, 398, 728, 734, 749
HpyF3I	CTNAG	3 cut(s)	372, 491, 566
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	398, 686
Kzo9I	GATC	2 cut(s)	295, 465
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	124, 829
Lsp1109I	GCAGC	2 cut(s)	385, 715
LweI	GCATC	2 cut(s)	205, 589
MaeI	CTAG	1 cut(s)	845
MalI	GATC	2 cut(s)	297, 467
MboI	GATC	2 cut(s)	295, 465
MboII	GAAGA	6 cut(s)	106, 158, 224, 359, 475, 847
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	121, 233
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	5 cut(s)	317, 456, 512, 687, 745
MluNI	TGGCCA	1 cut(s)	585
MmeI	TCCRAC	2 cut(s)	145, 586
MnlI	CCTC	9 cut(s)	200, 349, 381, 415, 418, 441, 718, 793, 806
Mox20I	TGGCCA	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	585
MslI	CAYNNNNRTG	2 cut(s)	644, 887
Msp20I	TGGCCA	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	767
MwoI	GCNNNNNNNGC	6 cut(s)	125, 134, 398, 728, 734, 749
NdeII	GATC	2 cut(s)	295, 465
NlaIII	CATG	2 cut(s)	398, 686
NlaIV	GGNNCC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	773
OliI	CACNNNNGTG	1 cut(s)	887
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	770, 782
PkrI	GCNGC	2 cut(s)	400, 730
Psp6I	CCWGG	1 cut(s)	765
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	297
PstNI	CAGNNNCTG	2 cut(s)	379, 728
PsuI	RGATCY	1 cut(s)	295
RseI	CAYNNNNRTG	2 cut(s)	644, 887
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	399, 729
Sau3AI	GATC	2 cut(s)	295, 465
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	121, 233
SfaNI	GCATC	2 cut(s)	205, 589
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	773
SmiMI	CAYNNNNRTG	2 cut(s)	644, 887
Sse9I	AATT	5 cut(s)	317, 456, 512, 687, 745
SspMI	CTAG	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	765
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	427, 596, 886
TaqI	TCGA	2 cut(s)	678, 773
TasI	AATT	5 cut(s)	317, 456, 512, 687, 745
TfiI	GAWTC	2 cut(s)	770, 782
TscAI	CASTG	4 cut(s)	609, 619, 705, 889
TseI	GCWGC	2 cut(s)	398, 728
TspDTI	ATGAA	6 cut(s)	60, 96, 291, 324, 699, 866
TspRI	CASTG	4 cut(s)	609, 619, 705, 889
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.