Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

71502773 .. 71505393

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG512300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAGTTCCCATTTTCAGGGCGTCAGTTCCCAAGTCTCACCCACTCATTCACTCCCTTTTTTCTACTTCATTTACTGATGAAACTTTAAAGAAGAGAAGGATGTCAGTCTCTTGCGCTCCGTCAGCAACCAAGCCAGTTCGGGAAGAGCTGTCTTTCTGTGTTGGAACCCATCTTATCCCACACCCCAGCAAGGTTGAAAAAGGAGGAGAAGATGCTTTCTTTGTGAGCACCTACAATGGGGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAACAGAAGGTGGATCCTTCATTGTTTCCTAAAGAATTGATGGCCTATGCTTCATCTTTTGTGGAAGATGTGGAGGTGAACGATAATCCTCAGGTTCTGATAGGAAAAGCACATGCTGCTACCTCCTCTATAGGTTCTGCTACCGTGATTGTTGCCATGCTCGAAAGGAATGGAATTCTGAAGATTGCCAATGTCGGGGATTGTGGACTTAGGGTTATTCGTGAAGGTAAAGTATATTTTTCTACATCACCACAGGAACATTATTTTGATTGTCCCTTCCAACTTAGCTCACAAGCTTTCGGCCAAACTTACCGTGATGCAGTGGTTAGCAGTGTTGAGTTGGTAGAAGGAGACACCATAGTAATGGGTTCGGATGGACTTTTTGATAATGTTTTCGACCATGAAATTGTTTCGACACTGACAGGATACAAAGATGTTGCAGAGGCTGGCATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

246

Amino Acids

26.47

Weight (kDa)

5.13

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	290, 303
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	4 cut(s)	151, 570, 578, 738
AluI	AGCT	4 cut(s)	151, 570, 578, 738
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	4 cut(s)	42, 115, 274, 627
AlwI	GGATC	2 cut(s)	290, 303
AlwNI	CAGNNNCTG	2 cut(s)	379, 728
AoxI	GGCC	2 cut(s)	324, 583
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	32, 370, 522
AxyI	CCTNAGG	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	4 cut(s)	180, 257, 316, 650
BciVI	GTATCC	1 cut(s)	701
BcoDI	GTCTC	4 cut(s)	42, 115, 274, 627
BfmI	CTRYAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	701
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	169, 297
BmsI	GCATC	2 cut(s)	205, 589
BsaHI	GRCGYC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	108, 661
BseLI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	222, 397
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	2 cut(s)	326, 585
BsiHKAI	GWGCWC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	4 cut(s)	18, 193, 240, 477
BsmAI	GTCTC	4 cut(s)	42, 115, 274, 627
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	2 cut(s)	326, 585
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	326, 585
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	169, 297
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	427, 596
Bst6I	CTCTTC	2 cut(s)	89, 141
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	3 cut(s)	372, 491, 566
BstF5I	GGATG	2 cut(s)	108, 661
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	4 cut(s)	42, 115, 274, 627
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 398
BstNSI	RCATGY	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	326, 585
BtsCI	GGATG	2 cut(s)	108, 661
BtsI	GCAGTG	2 cut(s)	609, 619
BtsIMutI	CAGTG	3 cut(s)	609, 619, 698
Cac8I	GCNNGC	1 cut(s)	730
CaiI	CAGNNNCTG	2 cut(s)	379, 728
CfoI	GCGC	1 cut(s)	119
CseI	GACGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	395, 439, 683
CviJI	RGCY	9 cut(s)	136, 151, 281, 326, 570, 578, 585, 728, 738
CviKI_1	RGCY	9 cut(s)	136, 151, 281, 326, 570, 578, 585, 728, 738
DdeI	CTNAG	3 cut(s)	372, 491, 566
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	2 cut(s)	89, 141
EarI	CTCTTC	2 cut(s)	89, 141
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	456
FaeI	CATG	3 cut(s)	398, 442, 686
FaiI	YATR	7 cut(s)	330, 396, 413, 440, 517, 641, 684
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	394, 438, 682
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	115, 668
Fsp4HI	GCNGC	1 cut(s)	399
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	326, 585
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	398, 442, 686
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	576
HphI	GGTGA	3 cut(s)	32, 370, 522
Hpy166II	GTNNAC	2 cut(s)	361, 488
Hpy188I	TCNGA	3 cut(s)	381, 462, 655
Hpy188III	TCNNGA	2 cut(s)	143, 503
Hpy8I	GTNNAC	2 cut(s)	361, 488
HpyAV	CCTTC	6 cut(s)	93, 283, 309, 500, 568, 623
HpyCH4III	ACNGT	2 cut(s)	427, 596
HpyCH4V	TGCA	2 cut(s)	602, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 398
HpyF3I	CTNAG	3 cut(s)	372, 491, 566
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	398, 442, 686
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	8 cut(s)	4, 150, 202, 258, 359, 521, 690, 714
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	205, 589
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	106, 158, 224, 359, 475
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	3 cut(s)	317, 456, 687
MmeI	TCCRAC	2 cut(s)	145, 586
MnlI	CCTC	6 cut(s)	200, 349, 381, 415, 418, 718
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	125, 398
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	398, 442, 686
NlaIV	GGNNCC	2 cut(s)	169, 297
NspI	RCATGY	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	169, 297
PstNI	CAGNNNCTG	2 cut(s)	379, 728
PsuI	RGATCY	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	205, 589
SfcI	CTRYAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	317, 456, 687
TaaI	ACNGT	2 cut(s)	427, 596
TaqI	TCGA	3 cut(s)	444, 678, 695
TasI	AATT	3 cut(s)	317, 456, 687
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	3 cut(s)	609, 619, 705
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	5 cut(s)	60, 96, 291, 324, 699
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	609, 619, 705
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.