Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Reverse (-)

4818189 .. 4820907

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1056600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGTTCCCATATTCCGGGCCTCAATTCCGAAGTCTCACCCGCTTATTCACTCCATTTCCTCTGCTCTATCACTCACTGATGAAACTTGGAAGAAGAAAAGATTGCTATCCTGCTCAGCTGCTTCGTCGGAACTCAAACCATTTCGGCCAGAGCTGTGTTTCTCTGTTGGAACTTATCTTATTCCACATCCCAACAAGGTTGAAAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAGCTACAATGGGGGAGTTCTTGCTGTTGCTGATGGTGTCTCCGGTTGGGCTGAACAGGATGTAGATCCTTCATTGTTCCCGAAAGAATTGATGACCAATGCCTCAAATTTTGTGGGAGATGTGGAGGTGAACAACGATCCTCGGATTCTGATAGGAAAAGCACACGCTTATACCTCTTCGATAGGTTCTGCTACGGTAATGATTGCCATGCTGGAGAGGGACGGGATTCTGAAAATCGCGAATGTTGGGGATTGCGGATTAAGGGTTATTCGTGAAGGTAAAATCAAATTTTCCACATCTCCACAAGAACACTATTTCGATTGTCCATACCAACTTAGTTCAGAGATTGTTGGCCAAACGTATCAGGATGCGATGGTTTCCAATGTTGAGATGATGGAAGGAGACACCATAGTTATGGGCTCGGATGGACTTTTTGACAATGTTTTCGACCATGAAATTGTTTCGACAGTGGCCGGATACAGAGACGTTGCTGAGACTGCAAAGGTATTAGCTAATTTGGCAAACAATCATTCGTTGGATTCAAACTTCGATTCTCCCTACTCCATGGAGGCTAGATCAAAGGGTTTCGAGCCTCCTTTGTGGAAAAAGATTCTCGGAATGAAGCTTACAGGTGGAAAGCCAGATGATATCACTGTGATTGTTGGTCAGGTTGTAAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

307

Amino Acids

33.2

Weight (kDa)

5.11

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	44, 492
AclWI	GGATC	2 cut(s)	296, 368
AcoI	YGGCCR	3 cut(s)	149, 589, 708
AcsI	RAATTY	2 cut(s)	343, 524
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	206, 780
AluBI	AGCT	6 cut(s)	122, 157, 240, 749, 862, 915
AluI	AGCT	6 cut(s)	122, 157, 240, 749, 862, 915
Alw26I	GTCTC	5 cut(s)	42, 280, 633, 714, 725
AlwI	GGATC	2 cut(s)	296, 368
AoxI	GGCC	4 cut(s)	21, 149, 589, 708
ApeKI	GCWGC	2 cut(s)	122, 237
ApoI	RAATTY	2 cut(s)	343, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	32, 376
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	109, 249
BccI	CCATC	4 cut(s)	263, 604, 625, 656
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	5 cut(s)	42, 280, 633, 714, 725
BfaI	CTAG	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	2 cut(s)	123, 238
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	2 cut(s)	124, 239
Bme1390I	CCNGG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	211, 595
BpmI	CTGGAG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	20
BsaBI	GATNNNNATC	2 cut(s)	109, 300
BsaJI	CCNNGG	2 cut(s)	377, 801
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse8I	GATNNNNATC	2 cut(s)	109, 300
BseDI	CCNNGG	2 cut(s)	377, 801
BseGI	GGATG	4 cut(s)	190, 301, 610, 667
BseJI	GATNNNNATC	2 cut(s)	109, 300
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	132, 720
BseXI	GCAGC	2 cut(s)	109, 249
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	4 cut(s)	23, 151, 591, 710
BsiSI	CCGG	3 cut(s)	19, 279, 711
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	5 cut(s)	42, 280, 633, 714, 725
BsmBI	CGTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	4 cut(s)	23, 151, 591, 710
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	301, 373, 812
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	801
Bsp68I	TCGCGA	1 cut(s)	476
BspACI	CCGC	2 cut(s)	44, 492
BspANI	GGCC	4 cut(s)	23, 151, 591, 710
BspCNI	CTCAG	2 cut(s)	131, 721
BspFNI	CGCG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	296, 368
BssECI	CCNNGG	2 cut(s)	377, 801
BssMI	GATC	3 cut(s)	301, 373, 812
BssT1I	CCWWGG	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	433, 706, 892
Bst6I	CTCTTC	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	118, 572, 729
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	4 cut(s)	190, 301, 610, 667
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	3 cut(s)	304, 376, 815
BstMAI	GTCTC	5 cut(s)	42, 280, 633, 714, 725
BstMBI	GATC	3 cut(s)	301, 373, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	734, 755
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	109, 249
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	4 cut(s)	23, 151, 591, 710
BtgI	CCRYGG	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	623
BtsCI	GGATG	4 cut(s)	190, 301, 610, 667
BtsIMutI	CAGTG	3 cut(s)	78, 711, 888
BtuMI	TCGCGA	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	3 cut(s)	445, 689, 802
DdeI	CTNAG	3 cut(s)	118, 572, 729
DpnI	GATC	3 cut(s)	303, 375, 814
DpnII	GATC	3 cut(s)	301, 373, 812
EaeI	YGGCCR	3 cut(s)	149, 589, 708
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	886
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	801
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	3 cut(s)	448, 692, 805
FaiI	YATR	9 cut(s)	14, 408, 446, 565, 647, 653, 690, 803, 919
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	444, 688, 801
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	123, 238
FokI	GGATG	4 cut(s)	177, 308, 617, 674
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	2 cut(s)	123, 238
FspBI	CTAG	1 cut(s)	810
GluI	GCNGC	2 cut(s)	123, 238
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	4 cut(s)	23, 151, 591, 710
HapII	CCGG	3 cut(s)	19, 279, 711
Hin1II	CATG	3 cut(s)	448, 692, 805
HindIII	AAGCTT	2 cut(s)	860, 913
HinfI	GANTC	5 cut(s)	382, 463, 776, 788, 847
HpaII	CCGG	3 cut(s)	19, 279, 711
HphI	GGTGA	2 cut(s)	32, 376
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	8 cut(s)	33, 133, 381, 387, 468, 580, 661, 854
Hpy188III	TCNNGA	4 cut(s)	316, 475, 509, 602
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	315, 506, 629
HpyCH4III	ACNGT	3 cut(s)	433, 706, 892
HpyCH4IV	ACGT	2 cut(s)	596, 723
HpyCH4V	TGCA	1 cut(s)	737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	734, 755
HpyF3I	CTNAG	3 cut(s)	118, 572, 729
HpySE526I	ACGT	2 cut(s)	596, 723
Hsp92II	CATG	3 cut(s)	448, 692, 805
Kzo9I	GATC	3 cut(s)	301, 373, 812
Lsp1109I	GCAGC	2 cut(s)	109, 249
LweI	GCATC	2 cut(s)	211, 595
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	2 cut(s)	596, 723
MalI	GATC	3 cut(s)	303, 375, 814
MboI	GATC	3 cut(s)	301, 373, 812
MboII	GAAGA	4 cut(s)	106, 109, 230, 405
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	6 cut(s)	27, 323, 343, 524, 693, 751
MluNI	TGGCCA	1 cut(s)	591
MmeI	TCCRAC	3 cut(s)	111, 151, 753
MnlI	CCTC	9 cut(s)	34, 73, 349, 355, 387, 421, 447, 799, 840
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	650
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	3 cut(s)	19, 279, 711
MspR9I	CCNGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	734, 755
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	801
NdeII	GATC	3 cut(s)	301, 373, 812
NlaIII	CATG	3 cut(s)	448, 692, 805
NruI	TCGCGA	1 cut(s)	476
PfeI	GAWTC	5 cut(s)	382, 463, 776, 788, 847
PkrI	GCNGC	2 cut(s)	124, 239
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	2 cut(s)	123, 238
Sau3AI	GATC	3 cut(s)	301, 373, 812
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	2 cut(s)	211, 595
SmiMI	CAYNNNNRTG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	27, 323, 343, 524, 693, 751
SsiI	CCGC	2 cut(s)	44, 492
SspMI	CTAG	1 cut(s)	810
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	433, 706, 892
TaiI	ACGT	2 cut(s)	599, 726
TaqI	TCGA	6 cut(s)	416, 555, 684, 701, 786, 825
TasI	AATT	6 cut(s)	27, 323, 343, 524, 693, 751
TfiI	GAWTC	5 cut(s)	382, 463, 776, 788, 847
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	3 cut(s)	85, 711, 895
TseI	GCWGC	2 cut(s)	122, 237
TspDTI	ATGAA	4 cut(s)	99, 297, 705, 872
TspRI	CASTG	3 cut(s)	85, 711, 895
XapI	RAATTY	2 cut(s)	343, 524
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.