Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005857

Physical Location & Seq

Genomic Coordinates Forward (+)

57061071 .. 57062889

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0413100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGAACTCCTCTTCCTGTATCATGGCCGGATCTAATGGATCTGCTCGGGTTTCTTTTGGCCCGGCTGGATCGGCGGCACTGCAGGATGACCACTGGTACATGGTGGGTCGTCTTCTCGGACCAAAAGCTCGCTTTCCTGGTTTTAAAGGCACAATCTCTTCCATTTGGAGAATCAAATCGGGGCTGACGATCCAAGATGCAGGTGATCGTTTCCTTTTCCAGTTTGAGCACGAAGCTGACATAAATCGTGCTCTCCATGGTGGACCGTGGTTCTATAGGAATACGATGCTTATGCTGGGTGGTTATGATGGGGTTGGACCGGTGGTGGCAGTTCCACTGTGGAGTCTGGAGACGTGGGTGGCGGTGAAGGGTTTACTGGTAGGCCTGCGCAATAAGGCTGCCCTAACCCTAATCGGCTCAACCATTGGTCAGGTTATTCGCTTTGATCAAAGGGCTCTCCGTCGTAGGGAGGAGGAGCAAAGGATCCGGGTGATATTGGATACTCGTCGCCGGATCCGTTCATGGATGATGGTTGAATTTTCGTCCACTGTTGAACTCGAGATCATCCTGATTTTCGAGAAAGTGAAGGGTTTATGTAGGGACTGTGGCTTGTTTGAACATGATGTTATGGGCTGTGATGGTTTCCTAGCGAAAGAAAAAGAGGAGTTGCTGCAGAAGCCGCAGGCTGCGGCGATGGCAGGGTTAGCACTGGATGCTCCGGGGACGGACGCGGGCTCTGCTACTGCTTCGAGTGCGAACTTGATGCAGAAGGGCGTGATTGGTGTTGGTTTGGCAGTGGTGATGGCTCCGGAGTTGGGTGGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

276

Amino Acids

29.96

Weight (kDa)

8.7

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	33 - 100	1.1e-09	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	167 - 214	4.9e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170 AT2G30170
fragaria_vesca	FvH4_3g39680 FvH4_3g39680 FvH4_3g39680 FvH4_3g39680
malus_domestica	MD03G1055500.v1.1 MD11G1056600.v1.1
prunus_persica	Prupe.6G049100_v2.0.a1 Prupe.6G049100_v2.0.a1
pyrus_communis	pycom11g04770
rosa_chinensis	RchiOBHm_Chr5g0071531
rosa_laevigata	RLG00000036222
rosa_multiflora	Rmu_sc0041629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009620
rosa_rugosa	Rorug05G0412900 Rorug05G0413000 Rorug05G0413100
rosa_samantha	Rh5AG468900 Rh5BG488200 Rh5CG512300 Rh5DG499000
rosa_wichuraiana	Rw5G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	194
AccII	CGCG	1 cut(s)	734
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	5 cut(s)	77, 365, 683, 692, 734
AclWI	GGATC	8 cut(s)	40, 49, 79, 187, 481, 494, 511, 524
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	469, 818
AgeI	ACCGGT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	539, 557, 620
AjiI	CACGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	139
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	131, 239
AluI	AGCT	2 cut(s)	131, 239
Alw21I	GWGCWC	2 cut(s)	234, 256
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	8 cut(s)	40, 49, 79, 187, 481, 494, 511, 524
Ama87I	CYCGRG	2 cut(s)	48, 560
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	3 cut(s)	27, 61, 385
ApeKI	GCWGC	3 cut(s)	401, 673, 689
ApoI	RAATTY	1 cut(s)	539
AsiGI	ACCGGT	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	4 cut(s)	62, 122, 266, 320
AsuC2I	CCSGG	3 cut(s)	65, 491, 723
AsuHPI	GGTGA	4 cut(s)	218, 379, 505, 814
AvaI	CYCGRG	2 cut(s)	48, 560
AvaII	GGWCC	3 cut(s)	122, 266, 320
BamHI	GGATCC	2 cut(s)	486, 516
BanII	GRGCYC	2 cut(s)	460, 740
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	234, 256
BbvI	GCAGC	3 cut(s)	388, 660, 676
BccI	CCATC	5 cut(s)	305, 526, 635, 691, 799
BcgI	CGANNNNNNTGC	4 cut(s)	277, 311, 748, 782
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	3 cut(s)	65, 491, 723
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	4 cut(s)	83, 277, 674, 827
BfuAI	ACCTGC	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	6 cut(s)	78, 402, 674, 683, 690, 693
BlsI	GCNGC	6 cut(s)	79, 403, 675, 684, 691, 694
Bme1390I	CCNGG	4 cut(s)	65, 141, 491, 723
Bme18I	GGWCC	3 cut(s)	122, 266, 320
BmeT110I	CYCGRG	2 cut(s)	48, 560
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	4 cut(s)	62, 122, 266, 320
BmiI	GGNNCC	3 cut(s)	488, 518, 810
BmrFI	CCNGG	4 cut(s)	65, 141, 491, 723
BmsI	GCATC	4 cut(s)	190, 279, 706, 756
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	3 cut(s)	65, 491, 723
BsaJI	CCNNGG	3 cut(s)	259, 269, 722
BsaWI	WCCGGW	2 cut(s)	322, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 818
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	4 cut(s)	101, 223, 384, 717
BseAI	TCCGGA	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	259, 269, 722
BseGI	GGATG	4 cut(s)	94, 534, 567, 721
BseLI	CCNNNNNNNGG	2 cut(s)	469, 818
BseNI	ACTGG	4 cut(s)	101, 223, 384, 717
BseRI	GAGGAG	3 cut(s)	488, 491, 680
BseXI	GCAGC	3 cut(s)	388, 660, 676
BseYI	CCCAGC	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	3 cut(s)	29, 63, 387
BshTI	ACCGGT	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	234, 256
BsiHKCI	CYCGRG	2 cut(s)	48, 560
BsiSI	CCGG	7 cut(s)	30, 65, 323, 490, 514, 722, 812
BslFI	GGGAC	2 cut(s)	617, 739
BslI	CCNNNNNNNGG	2 cut(s)	469, 818
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	617, 739
BsnI	GGCC	3 cut(s)	29, 63, 387
BsoBI	CYCGRG	2 cut(s)	48, 560
Bsp1286I	GDGCHC	4 cut(s)	234, 256, 460, 740
Bsp13I	TCCGGA	1 cut(s)	811
Bsp143I	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	5 cut(s)	77, 365, 683, 692, 734
BspANI	GGCC	3 cut(s)	29, 63, 387
BspEI	TCCGGA	1 cut(s)	811
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	3 cut(s)	488, 518, 810
BspMAI	CTGCAG	2 cut(s)	87, 678
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	8 cut(s)	40, 49, 79, 187, 481, 494, 511, 524
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	101, 223, 384, 717
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	259, 269, 722
BssMI	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	270, 342, 553, 608
Bst6I	CTCTTC	2 cut(s)	19, 166
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	4 cut(s)	133, 389, 687, 736
BstDSI	CCRYGG	2 cut(s)	259, 269
BstF5I	GGATG	4 cut(s)	94, 534, 567, 721
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	9 cut(s)	35, 44, 74, 195, 211, 451, 489, 519, 567
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 679, 682, 698, 707, 716, 740, 755
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	4 cut(s)	63, 139, 489, 721
BstSFI	CTRYAG	4 cut(s)	83, 277, 674, 827
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	388, 660, 676
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	4 cut(s)	32, 41, 486, 516
BstYI	RGATCY	4 cut(s)	32, 41, 486, 516
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	29, 63, 387
BtgI	CCRYGG	2 cut(s)	259, 269
BtgZI	GCGATG	1 cut(s)	710
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	94, 534, 567, 721
BtsI	GCAGTG	2 cut(s)	80, 804
BtsIMutI	CAGTG	6 cut(s)	80, 94, 338, 549, 710, 804
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	133, 389, 687, 736
CfoI	GCGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	4 cut(s)	62, 122, 266, 320
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	322
CviAII	CATG	5 cut(s)	25, 103, 260, 525, 623
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	9 cut(s)	34, 43, 73, 194, 210, 450, 488, 518, 566
DpnII	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
DraI	TTTAAA	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	19, 166
EarI	CTCTTC	2 cut(s)	19, 166
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	460, 740
Eco47I	GGWCC	3 cut(s)	122, 266, 320
Eco88I	CYCGRG	2 cut(s)	48, 560
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	460, 740
ErhI	CCWWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	5 cut(s)	28, 106, 263, 528, 626
FaqI	GGGAC	2 cut(s)	617, 739
FatI	CATG	5 cut(s)	24, 102, 259, 524, 622
FauI	CCCGC	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	6 cut(s)	78, 402, 674, 683, 690, 693
FokI	GGATG	4 cut(s)	101, 541, 554, 728
FriOI	GRGCYC	2 cut(s)	460, 740
Fsp4HI	GCNGC	6 cut(s)	78, 402, 674, 683, 690, 693
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	6 cut(s)	78, 402, 674, 683, 690, 693
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	29, 63, 387
HapII	CCGG	7 cut(s)	30, 65, 323, 490, 514, 722, 812
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	5 cut(s)	28, 106, 263, 528, 626
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	174, 346
HpaII	CCGG	7 cut(s)	30, 65, 323, 490, 514, 722, 812
HphI	GGTGA	4 cut(s)	218, 379, 505, 814
Hpy166II	GTNNAC	3 cut(s)	266, 377, 549
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	5 cut(s)	350, 562, 571, 580, 812
Hpy8I	GTNNAC	3 cut(s)	266, 377, 549
Hpy99I	CGWCG	2 cut(s)	468, 513
HpyAV	CCTTC	3 cut(s)	364, 583, 766
HpyCH4III	ACNGT	4 cut(s)	270, 342, 553, 608
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	4 cut(s)	85, 203, 676, 769
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 679, 682, 698, 707, 716, 740, 755
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	28, 106, 263, 528, 626
HspAI	GCGC	1 cut(s)	391
Kpn2I	TCCGGA	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
LmnI	GCTCC	3 cut(s)	478, 724, 814
Lsp1109I	GCAGC	3 cut(s)	388, 660, 676
LweI	GCATC	4 cut(s)	190, 279, 706, 756
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	356
MalI	GATC	9 cut(s)	34, 43, 73, 194, 210, 450, 488, 518, 566
MboI	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
MboII	GAAGA	3 cut(s)	6, 107, 153
MflI	RGATCY	4 cut(s)	32, 41, 486, 516
MhlI	GDGCHC	4 cut(s)	234, 256, 460, 740
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	22, 466, 469, 658
MroI	TCCGGA	1 cut(s)	811
MseI	TTAA	1 cut(s)	147
MspI	CCGG	7 cut(s)	30, 65, 323, 490, 514, 722, 812
MspR9I	CCNGG	4 cut(s)	65, 141, 491, 723
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	8 cut(s)	74, 679, 682, 698, 707, 716, 740, 755
NciI	CCSGG	3 cut(s)	65, 491, 723
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
NlaIII	CATG	5 cut(s)	28, 106, 263, 528, 626
NlaIV	GGNNCC	3 cut(s)	488, 518, 810
NsbI	TGCGCA	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	560
PaqCI	CACCTGC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 517
PfeI	GAWTC	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	79, 403, 675, 684, 691, 694
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	488, 518, 810
PspPI	GGNCC	4 cut(s)	62, 122, 266, 320
PstI	CTGCAG	2 cut(s)	87, 678
PsuI	RGATCY	4 cut(s)	32, 41, 486, 516
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	6 cut(s)	78, 402, 674, 683, 690, 693
Sau3AI	GATC	9 cut(s)	32, 41, 71, 192, 208, 448, 486, 516, 564
Sau96I	GGNCC	4 cut(s)	62, 122, 266, 320
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	4 cut(s)	65, 141, 491, 723
SduI	GDGCHC	4 cut(s)	234, 256, 460, 740
SetI	ASST	5 cut(s)	133, 208, 241, 359, 438
SfaNI	GCATC	4 cut(s)	190, 279, 706, 756
SfcI	CTRYAG	4 cut(s)	83, 277, 674, 827
Sfr274I	CTCGAG	1 cut(s)	560
SinI	GGWCC	3 cut(s)	122, 266, 320
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	1 cut(s)	539
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	5 cut(s)	77, 365, 683, 692, 734
SspMI	CTAG	1 cut(s)	650
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	63, 139, 489, 721
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	270, 342, 553, 608
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	561, 579, 752
TasI	AATT	1 cut(s)	539
TauI	GCSGC	3 cut(s)	80, 685, 695
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	6 cut(s)	87, 101, 345, 556, 717, 804
TseI	GCWGC	3 cut(s)	401, 673, 689
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	3 cut(s)	452, 509, 743
TspRI	CASTG	6 cut(s)	87, 101, 345, 556, 717, 804
VpaK11BI	GGWCC	3 cut(s)	122, 266, 320
XapI	RAATTY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.