Rorug05G0413000

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
57050123 .. 57050524
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0413000.1

Sequence Viewer

Length: 402 bp
ATGTGTGACCATCTGGAATGGTTGTGTCTTTGTACTAAGGAGCTATCATTGCAAAGCTTAGGAGATTTGGTGTATTTGTTGTGGGGAATTTGGAAGGAACGAAATGCTAGAGTATGGGATAAAAAACGTAGCCATCCTTGTGATATACTACTCAAGACTACTGCTCAATTACTGGAGATTTGTTTTCATGTTGCTAAGCCGACTGGTGGCGCAGGCAGATCAAGGTCAGTTAGTTGGTCTGCTCCCCCATCTAGTATGTACAAAATCAACTTTGATGGTTCATTCAACCATGTTTCAAGAAAGGGTAGTGTTGGTTTTATTGTGAGTGATTCCAATGGTCTATGGTTGCTAGTGGAGGCAAACCTTTATCTAGTCTGCTGTCTCCAGAACAAGCAGAAGTAG

Protein Analysis

133

Amino Acids

15.06

Weight (kDa)

8.89

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 2 cut(s) 34, 260
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 286, 297
AluBI AGCT 2 cut(s) 43, 57
AluI AGCT 2 cut(s) 43, 57
Alw26I GTCTC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 87
AspLEI GCGC 1 cut(s) 212
BccI CCATC 4 cut(s) 18, 141, 256, 269
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 4 cut(s) 108, 252, 350, 371
BlpI GCTNAGC 1 cut(s) 195
BpmI CTGGAG 2 cut(s) 194, 368
Bpu10I CCTNAGC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 177, 208
Bse3DI GCAATG 1 cut(s) 47
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 47
BseNI ACTGG 2 cut(s) 177, 208
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 218
Bsp1720I GCTNAGC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 2 cut(s) 177, 208
BssMI GATC 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 36, 58, 195
BstF5I GGATG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 33, 259
CviAII CATG 2 cut(s) 188, 290
CviJI RGCY 4 cut(s) 43, 57, 132, 199
CviKI_1 RGCY 4 cut(s) 43, 57, 132, 199
CviQI GTAC 2 cut(s) 33, 259
DdeI CTNAG 3 cut(s) 36, 58, 195
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
FaeI CATG 2 cut(s) 191, 293
FaiI YATR 6 cut(s) 115, 146, 189, 257, 291, 343
FatI CATG 2 cut(s) 187, 289
FokI GGATG 1 cut(s) 120
FspBI CTAG 4 cut(s) 108, 252, 350, 371
GlaI GCGC 1 cut(s) 211
GsuI CTGGAG 2 cut(s) 194, 368
HhaI GCGC 1 cut(s) 212
Hin1II CATG 2 cut(s) 191, 293
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 1 cut(s) 329
Hpy188III TCNNGA 4 cut(s) 14, 154, 297, 385
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 3 cut(s) 36, 58, 195
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 191, 293
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 40, 247
LpnPI CCDG 4 cut(s) 158, 189, 198, 398
MaeI CTAG 4 cut(s) 108, 252, 350, 371
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MluCI AATT 2 cut(s) 87, 167
MnlI CCTC 1 cut(s) 349
MslI CAYNNNNRTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 218
NlaIII CATG 2 cut(s) 191, 293
NmuCI GTSAC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 329
RsaI GTAC 2 cut(s) 34, 260
RsaNI GTAC 2 cut(s) 33, 259
RseI CAYNNNNRTG 1 cut(s) 138
Sau3AI GATC 1 cut(s) 218
SetI ASST 5 cut(s) 45, 59, 130, 227, 366
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 87, 167
SspMI CTAG 4 cut(s) 108, 252, 350, 371
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 87, 167
TatI WGTACW 2 cut(s) 32, 258
TfiI GAWTC 1 cut(s) 329
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 176, 270
XapI RAATTY 1 cut(s) 87
XspI CTAG 4 cut(s) 108, 252, 350, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.