AT2G30270

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011271
Physical Location & Seq
Reverse (-)
12907821 .. 12909261
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30270.1

Sequence Viewer

Length: 549 bp
ATGGCTGATTCCGAGACTCCGTATCACCCCGACCCTGAGGATCTCCGGCGTATACCAGTCGATCTCTTCGCTTCCAAAAAGCTTCCCGGACTTTCCTCCGGCGATCTCGGATTTGCCGATTCTTCCGAACATCTCGTCTTCATCCTCCGCAAATCTTCTTCCTCCTTGAAATCTCTCCTTGATTCCTCCGGAGTTCCTCTCTTCTCCATCTCTCGTCTCCACAATGGAGTGTGGGAATTACATAAAGGAGATGTGGAAAAGCGTAAGGATTTGGTTCTAACGGTGAAGCGGACATCGAAAAGATTCAGTAAGACAGAGTCAGAGGTCTCTTTTGCTGGAGAATCGTCCGAAAATCTTGTTATCAAAGGTGTTCCCTTTCAGAAATCTTGTACCATTTATAGTCAAGATTCCATTGTTGCACAGACGAGTTTGATGTACAAGCTGAGACAGATTTACGTAGGGAGAAGCAAGTTCCGGTTAACGATATTTCCTGGATCCATCGATCATTCACTAGTAGTCGCAATGGTTGCCATATTTCTTCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

182

Amino Acids

20.21

Weight (kDa)

9.18

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 20 - 179 3.2e-29 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 52
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 2 cut(s) 148, 289
AclWI GGATC 3 cut(s) 48, 489, 502
AfaI GTAC 2 cut(s) 391, 437
AgsI TTSAA 2 cut(s) 169, 542
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 2 cut(s) 82, 442
AluI AGCT 2 cut(s) 82, 442
Alw26I GTCTC 4 cut(s) 8, 221, 331, 439
AlwI GGATC 3 cut(s) 48, 489, 502
Aor13HI TCCGGA 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 17, 295
AxyI CCTNAGG 1 cut(s) 36
BamHI GGATCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 130
BccI CCATC 2 cut(s) 215, 506
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 4 cut(s) 8, 221, 331, 439
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 87, 492
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 2 cut(s) 87, 492
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 331
BsaWI WCCGGW 2 cut(s) 188, 474
Bse1I ACTGG 1 cut(s) 56
Bse21I CCTNAGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 501
BseGI GGATG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 27, 434
BseNI ACTGG 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 501
BsiSI CCGG 5 cut(s) 46, 87, 99, 189, 475
BsmAI GTCTC 4 cut(s) 8, 221, 331, 439
BsmBI CGTCTC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 5 cut(s) 40, 61, 103, 494, 502
BspACI CCGC 2 cut(s) 148, 289
BspCNI CTCAG 2 cut(s) 28, 435
BspDI ATCGAT 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 496
BspPI GGATC 3 cut(s) 48, 489, 502
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 1 cut(s) 56
BssMI GATC 5 cut(s) 40, 61, 103, 494, 502
BssNAI GTATAC 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 71, 206
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 36, 443
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 5 cut(s) 43, 64, 106, 497, 505
BstMAI GTCTC 4 cut(s) 8, 221, 331, 439
BstMBI GATC 5 cut(s) 40, 61, 103, 494, 502
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 85, 490
BstSNI TACGTA 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 40, 494
BstYI RGATCY 2 cut(s) 40, 494
BstZ17I GTATAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 36
BsuTUI ATCGAT 1 cut(s) 501
BtsCI GGATG 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 2 cut(s) 390, 436
CviJI RGCY 3 cut(s) 5, 82, 442
CviKI_1 RGCY 3 cut(s) 5, 82, 442
CviQI GTAC 2 cut(s) 390, 436
DdeI CTNAG 2 cut(s) 36, 443
DpnI GATC 5 cut(s) 42, 63, 105, 496, 504
DpnII GATC 5 cut(s) 40, 61, 103, 494, 502
Eam1104I CTCTTC 2 cut(s) 71, 206
EarI CTCTTC 2 cut(s) 71, 206
Eco105I TACGTA 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 4 cut(s) 53, 243, 399, 533
FblI GTMKAC 1 cut(s) 52
FokI GGATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 357
HapII CCGG 5 cut(s) 46, 87, 99, 189, 475
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 8 cut(s) 8, 16, 119, 182, 303, 317, 341, 407
HpaI GTTAAC 1 cut(s) 480
HpaII CCGG 5 cut(s) 46, 87, 99, 189, 475
HphI GGTGA 2 cut(s) 17, 295
Hpy166II GTNNAC 2 cut(s) 53, 480
Hpy188I TCNGA 6 cut(s) 13, 110, 127, 322, 349, 381
Hpy188III TCNNGA 2 cut(s) 189, 404
Hpy8I GTNNAC 2 cut(s) 53, 480
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 2 cut(s) 36, 443
HpySE526I ACGT 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 188
KspAI GTTAAC 1 cut(s) 480
Kzo9I GATC 5 cut(s) 40, 61, 103, 494, 502
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 456
MalI GATC 5 cut(s) 42, 63, 105, 496, 504
MboI GATC 5 cut(s) 40, 61, 103, 494, 502
MboII GAAGA 7 cut(s) 58, 114, 130, 147, 150, 193, 530
MflI RGATCY 2 cut(s) 40, 494
MluCI AATT 1 cut(s) 236
MlyI GAGTC 2 cut(s) 10, 326
MnlI CCTC 7 cut(s) 31, 106, 155, 172, 196, 207, 316
MroI TCCGGA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 479
MspI CCGG 5 cut(s) 46, 87, 99, 189, 475
MspR9I CCNGG 2 cut(s) 87, 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 87
NdeII GATC 5 cut(s) 40, 61, 103, 494, 502
NlaIV GGNNCC 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 6 cut(s) 8, 119, 182, 303, 341, 407
PflFI GACNNNGTC 1 cut(s) 316
PfoI TCCNGGA 2 cut(s) 85, 490
PleI GAGTC 2 cut(s) 10, 325
PpsI GAGTC 2 cut(s) 10, 325
Ppu21I YACGTR 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 496
PsuI RGATCY 2 cut(s) 40, 494
PsyI GACNNNGTC 1 cut(s) 316
RsaI GTAC 2 cut(s) 391, 437
RsaNI GTAC 2 cut(s) 390, 436
SaqAI TTAA 1 cut(s) 479
Sau3AI GATC 5 cut(s) 40, 61, 103, 494, 502
SchI GAGTC 2 cut(s) 10, 326
ScrFI CCNGG 2 cut(s) 87, 492
SetI ASST 5 cut(s) 84, 327, 370, 444, 459
SnaBI TACGTA 1 cut(s) 457
SpeI ACTAGT 1 cut(s) 511
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 148, 289
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 85, 490
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 459
TaqI TCGA 3 cut(s) 60, 296, 501
TasI AATT 1 cut(s) 236
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 6 cut(s) 8, 119, 182, 303, 341, 407
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.