MD11G1060400.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011271
Physical Location & Seq
Reverse (-)
5235678 .. 5238230
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1060400.v1.1.491

Sequence Viewer

Length: 570 bp
ATGGCTGACATCGTTCCAGCTTCAGCCCCTGTTCATCCCACGAGCTCACAAATCCCGGTCGATCTCTTTGTCTCCAAGAAACATCCCGGCCTTCCACGTGGCGAATTGGGTTTCCTCGATTCCTCCGGCGACACCGTTTACAAAGTTACCCATCAATCTCCCAAGACTTCTTCTCACAAGCGCGTGCTGCTTGACGCCGCAGGAAATCCTCTGTTTTCTTTGCGCCGTAAAGATCATGGAAGCTGGGAAGGATACAAAGGGGGAGATAGTGAGGAGAAAGACTTGAAATTTAGAGTGAAGAGAACGAAAAATAAGCTTACCAGAACTGAGTTGGAAGTGTTTCTTGTTGGTGAGAACTCAGCAGATTCAGCCTGTGATTTCAAAGTGAAGGGCTTTCCTTTCCAGAAATCTTGCACCATCTACAGAGGCAATGAGATAGTTGCTCAGACGAGTCTTATGTACAAATTGCACCAGCTTATGCCAAAGAGAGGAAAATTTCGACTAACTATATTTCCTGGACCCGTGGATCATGCTTTGATAGCGGCCTTGATTGTAATATTTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

190

Amino Acids

21.01

Weight (kDa)

9.52

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 20 - 187 4.6e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 198, 542
AclWI GGATC 1 cut(s) 534
AcsI RAATTY 2 cut(s) 287, 494
AcuI CTGAAG 1 cut(s) 6
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 2 cut(s) 286, 382
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 5 cut(s) 20, 45, 243, 316, 475
AluI AGCT 5 cut(s) 20, 45, 243, 316, 475
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 534
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 88, 543
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 287, 494
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 183, 225
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 2 cut(s) 56, 87
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 47
BauI CACGAG 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 159, 425
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 56, 87
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 421
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 3 cut(s) 188, 198, 543
BlsI GCNGC 3 cut(s) 189, 199, 544
Bme1390I CCNGG 3 cut(s) 56, 87, 516
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 3 cut(s) 56, 87, 516
BpuMI CCSGG 2 cut(s) 56, 87
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 2 cut(s) 34, 82
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 3 cut(s) 318, 372, 458
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 90, 545
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 3 cut(s) 56, 87, 126
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 90, 545
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 3 cut(s) 61, 232, 526
BspACI CCGC 2 cut(s) 198, 542
BspANI GGCC 2 cut(s) 90, 545
BspCNI CTCAG 3 cut(s) 319, 371, 457
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 3 cut(s) 61, 232, 526
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 327, 358, 444
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 34, 82
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 225
BstKTI GATC 3 cut(s) 64, 235, 529
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 3 cut(s) 61, 232, 526
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 187, 368, 539
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 54, 85, 514
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 174
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 90, 545
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 34, 82
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 183, 225
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 460
CviAII CATG 2 cut(s) 236, 530
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 327, 358, 444
DpnI GATC 3 cut(s) 63, 234, 528
DpnII GATC 3 cut(s) 61, 232, 526
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 6
Eco72I CACGTG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 2 cut(s) 239, 533
FaiI YATR 5 cut(s) 237, 458, 479, 509, 531
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 2 cut(s) 235, 529
Fnu4HI GCNGC 3 cut(s) 188, 198, 543
FokI GGATG 2 cut(s) 21, 69
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 188, 198, 543
GlaI GCGC 2 cut(s) 182, 224
GluI GCNGC 3 cut(s) 188, 198, 543
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 90, 545
HapII CCGG 3 cut(s) 56, 87, 126
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 183, 225
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 239, 533
Hin6I GCGC 2 cut(s) 181, 223
HinP1I GCGC 2 cut(s) 181, 223
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 119, 365, 451
HpaII CCGG 3 cut(s) 56, 87, 126
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 2 cut(s) 403, 563
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 101, 242, 382
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 414, 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 368, 539
HpyF3I CTNAG 3 cut(s) 327, 358, 444
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 239, 533
HspAI GCGC 2 cut(s) 181, 223
Kzo9I GATC 3 cut(s) 61, 232, 526
Lsp1109I GCAGC 1 cut(s) 174
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 63, 234, 528
MboI GATC 3 cut(s) 61, 232, 526
MboII GAAGA 2 cut(s) 162, 310
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 4 cut(s) 104, 287, 464, 494
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 125, 133, 219, 265, 419, 482
MroXI GAANNNNTTC 1 cut(s) 339
MspI CCGG 3 cut(s) 56, 87, 126
MspR9I CCNGG 3 cut(s) 56, 87, 516
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 187, 368, 539
NciI CCSGG 2 cut(s) 56, 87
NdeII GATC 3 cut(s) 61, 232, 526
NlaIII CATG 2 cut(s) 239, 533
NlaIV GGNNCC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 119, 365
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 3 cut(s) 189, 199, 544
PleI GAGTC 1 cut(s) 459
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 1 cut(s) 459
Ppu21I YACGTR 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 514
PspCI CACGTG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SacI GAGCTC 1 cut(s) 47
SatI GCNGC 3 cut(s) 188, 198, 543
Sau3AI GATC 3 cut(s) 61, 232, 526
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 56, 87, 516
SduI GDGCHC 1 cut(s) 47
SetI ASST 6 cut(s) 22, 47, 100, 245, 318, 477
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 104, 287, 464, 494
SsiI CCGC 2 cut(s) 198, 542
SspI AATATT 1 cut(s) 558
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 54, 85, 514
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 60, 117, 499, 564
TasI AATT 4 cut(s) 104, 287, 464, 494
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 200, 545
TfiI GAWTC 2 cut(s) 119, 365
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 287, 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.