RLG00000036267

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011271
Physical Location & Seq
Reverse (-)
78220980 .. 78223894
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036267

Sequence Viewer

Length: 900 bp
ATGTTGCTATCCAACTTCTATGGGCTTGTCGGGGACTTGCAAGGTGTGGCAAAAATGAGAAGATTGATGCTAGATAGAGGAATAAGGAAAGAAAAGGCAAGCACTTGGATTGAGATTAACAAAACAGTTCACAGTTTTCAATCTGGAGACAGATCCCATCCCCTAAGTAAAGACATCTACAACTACTTGCAACATCTTTTTCGGAAGTTGAAAATTAACGGGTACGTTCCAAACACAAGCATGGTAATGCAAAATGTGGATGAACAGACAAAGGAGGAGATAGTTCTCAGTCATAGCGAGAAACTGGCAATTGGACTAGGCCTAATCAGCACACCTCCAGTTCTTACAAATCCAACAAATACTGAAATTCCGGTCGATCTCTTCGTCTCCAAGAAACATCCAGGCCTGCCACGTGGCGACTTGGGTTTCCTGGATTCCGCTGGTAACGTAGTTTTCAAGGTCACCCATCAATCTCTGAAGTCATCATCCAATAAGCGCGTGTTGCTTGATGCAGCTGGAAATCCTCTGCTTACTTTGTGCCTCAGTAATAGCGGATGTTGGCTAGGATATAAGGGTGGTCAAGCTGAGGAGAATCAGTTGATATTTAGAGTGCAGAGAACGAAAAACAAACTTACTCGAATTGAGCTGGAGGTGTTTATTGGTGGTGAGATTTCAACAGAGGCAACCTGTGATTTTAAAGTGAAAGGGTTCCCGTTCCAAAAATCATGCAGCATCTATAGCGGCAATGACATAGTTGCTCAGACTAGTCTTATGTACAAATTGCACCAGCCTTTTCCCAAGAGGGGAAAATTTCGATTGACCATCTTTCCTGGATCTGTCGATCATGCTTTGGTTGCAGCCTTAATTTTTAGCAGAAAATGGGGTTTGATGACGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

9.6

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eplus_motif PF20430 43 - 70 2.1e-07 E+ motif
DYW_deaminase PF14432 74 - 113 4.7e-08 DYW family of nucleic acid deaminases
LOR PF04525 125 - 289 4.7e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 498
AciI CCGC 3 cut(s) 438, 552, 741
AclWI GGATC 2 cut(s) 147, 841
AcsI RAATTY 2 cut(s) 366, 809
AcuI CTGAAG 1 cut(s) 497
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 224, 776
AfiI CCNNNNNNNGG 1 cut(s) 803
AgsI TTSAA 4 cut(s) 140, 211, 457, 675
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 3 cut(s) 400, 429, 829
AluBI AGCT 3 cut(s) 515, 584, 646
AluI AGCT 3 cut(s) 515, 584, 646
Alw26I GTCTC 2 cut(s) 141, 391
AlwI GGATC 2 cut(s) 147, 841
AoxI GGCC 2 cut(s) 319, 403
ApeKI GCWGC 3 cut(s) 512, 729, 857
ApoI RAATTY 2 cut(s) 366, 809
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 454, 677
BbrPI CACGTG 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 524, 741, 869
BccI CCATC 3 cut(s) 165, 474, 830
BciT130I CCWGG 3 cut(s) 402, 431, 831
BcoDI GTCTC 2 cut(s) 141, 391
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 4 cut(s) 71, 317, 563, 765
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 4 cut(s) 513, 730, 742, 858
BlsI GCNGC 4 cut(s) 514, 731, 743, 859
Bme1390I CCNGG 3 cut(s) 402, 431, 831
BmiI GGNNCC 1 cut(s) 710
BmrFI CCNGG 3 cut(s) 402, 431, 831
BmsI GCATC 3 cut(s) 57, 499, 741
BpmI CTGGAG 3 cut(s) 165, 321, 668
Bpu10I CCTNAGC 1 cut(s) 585
BsaAI YACGTR 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse1I ACTGG 2 cut(s) 309, 338
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 3 cut(s) 402, 431, 831
BseGI GGATG 5 cut(s) 157, 265, 397, 485, 560
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 4 cut(s) 301, 556, 576, 773
BseNI ACTGG 2 cut(s) 309, 338
BseRI GAGGAG 2 cut(s) 290, 602
BseXI GCAGC 3 cut(s) 524, 741, 869
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 321, 405
BsiEI CGRYCG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 803
BsmAI GTCTC 2 cut(s) 141, 391
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 321, 405
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 4 cut(s) 152, 376, 833, 841
BspACI CCGC 3 cut(s) 438, 552, 741
BspANI GGCC 2 cut(s) 321, 405
BspCNI CTCAG 4 cut(s) 300, 555, 577, 772
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 710
BspPI GGATC 2 cut(s) 147, 841
BsrDI GCAATG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 2 cut(s) 309, 338
BssMI GATC 4 cut(s) 152, 376, 833, 841
Bst2UI CCWGG 3 cut(s) 402, 431, 831
Bst4CI ACNGT 2 cut(s) 127, 134
Bst6I CTCTTC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 774
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 100, 407
BstDEI CTNAG 5 cut(s) 164, 287, 542, 585, 759
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 5 cut(s) 157, 265, 397, 485, 560
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 4 cut(s) 155, 379, 836, 844
BstMAI GTCTC 2 cut(s) 141, 391
BstMBI GATC 4 cut(s) 152, 376, 833, 841
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 4 cut(s) 327, 502, 738, 854
BstNI CCWGG 3 cut(s) 402, 431, 831
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 400, 429, 829
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 524, 741, 869
BstX2I RGATCY 2 cut(s) 152, 833
BstYI RGATCY 2 cut(s) 152, 833
BsuRI GGCC 2 cut(s) 321, 405
BtsCI GGATG 5 cut(s) 157, 265, 397, 485, 560
Cac8I GCNNGC 2 cut(s) 100, 407
CfoI GCGC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 223, 775
CviAII CATG 3 cut(s) 241, 726, 845
CviJI RGCY 9 cut(s) 25, 321, 405, 515, 562, 584, 646, 790, 860
CviKI_1 RGCY 9 cut(s) 25, 321, 405, 515, 562, 584, 646, 790, 860
CviQI GTAC 2 cut(s) 223, 775
DdeI CTNAG 5 cut(s) 164, 287, 542, 585, 759
DpnI GATC 4 cut(s) 154, 378, 835, 843
DpnII GATC 4 cut(s) 152, 376, 833, 841
DraI TTTAAA 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco147I AGGCCT 2 cut(s) 321, 405
Eco57I CTGAAG 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 3 cut(s) 400, 429, 829
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 3 cut(s) 244, 729, 848
FaiI YATR 9 cut(s) 21, 242, 294, 570, 727, 738, 752, 773, 846
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 240, 725, 844
Fnu4HI GCNGC 4 cut(s) 513, 730, 742, 858
FokI GGATG 5 cut(s) 144, 272, 384, 472, 567
Fsp4HI GCNGC 4 cut(s) 513, 730, 742, 858
FspBI CTAG 4 cut(s) 71, 317, 563, 765
GlaI GCGC 1 cut(s) 497
GluI GCNGC 4 cut(s) 513, 730, 742, 858
GsuI CTGGAG 3 cut(s) 165, 321, 668
HaeIII GGCC 2 cut(s) 321, 405
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 498
Hin1II CATG 3 cut(s) 244, 729, 848
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 2 cut(s) 434, 592
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 454, 677
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 204, 477, 762
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 127, 134
HpyCH4IV ACGT 3 cut(s) 225, 412, 447
HpyCH4V TGCA 8 cut(s) 40, 190, 250, 512, 613, 729, 784, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 327, 502, 738, 854
HpyF3I CTNAG 5 cut(s) 164, 287, 542, 585, 759
HpySE526I ACGT 3 cut(s) 225, 412, 447
Hsp92II CATG 3 cut(s) 244, 729, 848
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 152, 376, 833, 841
Lsp1109I GCAGC 3 cut(s) 524, 741, 869
LweI GCATC 3 cut(s) 57, 499, 741
MaeI CTAG 4 cut(s) 71, 317, 563, 765
MaeII ACGT 3 cut(s) 225, 412, 447
MaeIII GTNAC 2 cut(s) 443, 460
MalI GATC 4 cut(s) 154, 378, 835, 843
MboI GATC 4 cut(s) 152, 376, 833, 841
MboII GAAGA 2 cut(s) 72, 373
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 152, 833
MluCI AATT 7 cut(s) 213, 309, 366, 639, 779, 809, 864
MmeI TCCRAC 2 cut(s) 36, 377
MnlI CCTC 9 cut(s) 71, 268, 345, 534, 551, 580, 643, 673, 795
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 5 cut(s) 117, 216, 696, 863, 898
MslI CAYNNNNRTG 2 cut(s) 239, 245
MspA1I CMGCKG 2 cut(s) 440, 515
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 3 cut(s) 402, 431, 831
MunI CAATTG 1 cut(s) 309
MvaI CCWGG 3 cut(s) 402, 431, 831
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 327, 502, 738, 854
NdeII GATC 4 cut(s) 152, 376, 833, 841
NlaIII CATG 3 cut(s) 244, 729, 848
NlaIV GGNNCC 1 cut(s) 710
NmuCI GTSAC 1 cut(s) 460
PceI AGGCCT 2 cut(s) 321, 405
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 434, 592
PfoI TCCNGGA 2 cut(s) 429, 829
PkrI GCNGC 4 cut(s) 514, 731, 743, 859
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 400, 429, 829
PspCI CACGTG 1 cut(s) 413
PspEI GGTNACC 1 cut(s) 460
PspGI CCWGG 3 cut(s) 400, 429, 829
PspN4I GGNNCC 1 cut(s) 710
PsuI RGATCY 2 cut(s) 152, 833
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 224, 776
RsaNI GTAC 2 cut(s) 223, 775
RseI CAYNNNNRTG 2 cut(s) 239, 245
SaqAI TTAA 5 cut(s) 117, 216, 696, 863, 898
SatI GCNGC 4 cut(s) 513, 730, 742, 858
Sau3AI GATC 4 cut(s) 152, 376, 833, 841
ScrFI CCNGG 3 cut(s) 402, 431, 831
SfaNI GCATC 3 cut(s) 57, 499, 741
SfcI CTRYAG 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 239, 245
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 7 cut(s) 213, 309, 366, 639, 779, 809, 864
SseBI AGGCCT 2 cut(s) 321, 405
SsiI CCGC 3 cut(s) 438, 552, 741
SspMI CTAG 4 cut(s) 71, 317, 563, 765
StuI AGGCCT 2 cut(s) 321, 405
StyD4I CCNGG 3 cut(s) 400, 429, 829
TaaI ACNGT 2 cut(s) 127, 134
TaiI ACGT 3 cut(s) 228, 415, 450
TaqI TCGA 4 cut(s) 375, 637, 814, 840
TasI AATT 7 cut(s) 213, 309, 366, 639, 779, 809, 864
TatI WGTACW 1 cut(s) 774
TauI GCSGC 1 cut(s) 744
TfiI GAWTC 2 cut(s) 434, 592
Tru1I TTAA 5 cut(s) 117, 216, 696, 863, 898
Tru9I TTAA 5 cut(s) 117, 216, 696, 863, 898
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 3 cut(s) 512, 729, 857
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 276
XapI RAATTY 2 cut(s) 366, 809
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 4 cut(s) 71, 317, 563, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.