FvH4_3g39960

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011271
Physical Location & Seq
Reverse (-)
33835998 .. 33837429
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39960.t1

Sequence Viewer

Length: 561 bp
ATGGACAATTCAGTTCTTATACATCCCACGAGTTCTGAAATCCCGGTCGATCTCTTTGTCTCCAAGAAACATCCTGGCCTGCCACGTGGCGACTTGGGTTTCCTGGATTCATCTGGTAACGTGGTTTACAAAGTCACCCATCAATCTCTCAAGTCATCATCCAATAAGCGCGTGTTGCTTGATGCCGCTGGAAATCCTCTGCTTACTTTGTGCCTCAGTAATAGTGGATGTTGGCAAGGATACAAGGGTGGTGAAGCTGAGGATAGTCAGTTGATATTCAGAGTGCAGAGAACGAAAAACAAACTTACTCGAGTTGAGCTGGAGGTGTTTATTGTTGGTGAGATTTCGACAGAGCCGGCAACCTGTGATTTCAAAGTTAAAGGCTTCCCTTTCCAAAAATCATGCAACATCTATAGTGGCAATCTCATAGTTGCTCAGACTAGTCTCATGTACAAATTGCACCAGCCTTTTCCCAAGAGGGGAAAATTTCGATTGACCATATTTCCTGGATCTGTCGATCATGCTTTGGTTGCTGCCTTAATTGTAATATTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

187

Amino Acids

20.5

Weight (kDa)

9.06

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 16 - 184 4.6e-35 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 485
AcvI CACGTG 1 cut(s) 86
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 1 cut(s) 373
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 3 cut(s) 73, 102, 505
AluBI AGCT 2 cut(s) 257, 319
AluI AGCT 2 cut(s) 257, 319
Alw26I GTCTC 2 cut(s) 64, 449
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 1 cut(s) 485
AspLEI GCGC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 127, 263, 350
AvaI CYCGRG 1 cut(s) 309
BaeI ACNNNNGTAYC 2 cut(s) 232, 265
BauI CACGAG 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 3 cut(s) 75, 104, 507
BciVI GTATCC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 64, 449
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 412
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 2 cut(s) 186, 534
BlsI GCNGC 2 cut(s) 187, 535
Bme1390I CCNGG 4 cut(s) 44, 75, 104, 507
BmeT110I CYCGRG 1 cut(s) 309
BmrFI CCNGG 4 cut(s) 44, 75, 104, 507
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse118I RCCGGY 1 cut(s) 355
BseBI CCWGG 3 cut(s) 75, 104, 507
BseGI GGATG 4 cut(s) 22, 70, 158, 233
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 3 cut(s) 229, 249, 449
BseXI GCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 44, 356
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 64, 449
BsnI GGCC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 3 cut(s) 49, 509, 517
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 3 cut(s) 228, 250, 448
BspFNI CGCG 1 cut(s) 171
BspPI GGATC 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 355
BssMI GATC 3 cut(s) 49, 509, 517
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 75, 104, 507
BstAUI TGTACA 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 80, 357
BstDEI CTNAG 3 cut(s) 215, 258, 435
BstF5I GGATG 4 cut(s) 22, 70, 158, 233
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 52, 512, 520
BstMAI GTCTC 2 cut(s) 64, 449
BstMBI GATC 3 cut(s) 49, 509, 517
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 175, 530
BstNI CCWGG 3 cut(s) 75, 104, 507
BstSCI CCNGG 4 cut(s) 42, 73, 102, 505
BstSFI CTRYAG 1 cut(s) 412
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 520
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 4 cut(s) 22, 70, 158, 233
Cac8I GCNNGC 2 cut(s) 80, 357
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 355
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 402, 448, 521
CviJI RGCY 6 cut(s) 78, 257, 319, 355, 384, 466
CviKI_1 RGCY 6 cut(s) 78, 257, 319, 355, 384, 466
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 215, 258, 435
DpnI GATC 3 cut(s) 51, 511, 519
DpnII GATC 3 cut(s) 49, 509, 517
Eco72I CACGTG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 309
EcoRII CCWGG 3 cut(s) 73, 102, 505
FaeI CATG 3 cut(s) 405, 451, 524
FaiI YATR 7 cut(s) 20, 403, 414, 428, 449, 500, 522
FatI CATG 3 cut(s) 401, 447, 520
Fnu4HI GCNGC 2 cut(s) 186, 534
FokI GGATG 4 cut(s) 9, 57, 145, 240
Fsp4HI GCNGC 2 cut(s) 186, 534
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 186, 534
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 44, 356
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 405, 451, 524
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 107
HpaII CCGG 2 cut(s) 44, 356
HphI GGTGA 3 cut(s) 127, 263, 350
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 3 cut(s) 37, 281, 438
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 85, 120
HpyCH4V TGCA 3 cut(s) 286, 405, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 530
HpyF3I CTNAG 3 cut(s) 215, 258, 435
HpySE526I ACGT 2 cut(s) 85, 120
Hsp92II CATG 3 cut(s) 405, 451, 524
HspAI GCGC 1 cut(s) 169
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 49, 509, 517
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 85, 120
MaeIII GTNAC 2 cut(s) 116, 133
MalI GATC 3 cut(s) 51, 511, 519
MboI GATC 3 cut(s) 49, 509, 517
MflI RGATCY 1 cut(s) 509
MluCI AATT 4 cut(s) 7, 455, 485, 540
MnlI CCTC 5 cut(s) 207, 224, 253, 316, 471
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 2 cut(s) 378, 539
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 44, 356
MspR9I CCNGG 4 cut(s) 44, 75, 104, 507
MvaI CCWGG 3 cut(s) 75, 104, 507
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 175, 530
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 49, 509, 517
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 3 cut(s) 405, 451, 524
NmuCI GTSAC 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 2 cut(s) 102, 505
PkrI GCNGC 2 cut(s) 187, 535
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 73, 102, 505
PspCI CACGTG 1 cut(s) 86
PspGI CCWGG 3 cut(s) 73, 102, 505
PspXI VCTCGAGB 1 cut(s) 309
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 378, 539
SatI GCNGC 2 cut(s) 186, 534
Sau3AI GATC 3 cut(s) 49, 509, 517
ScrFI CCNGG 4 cut(s) 44, 75, 104, 507
SetI ASST 6 cut(s) 88, 123, 259, 321, 327, 365
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 412
Sfr274I CTCGAG 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 309
SmlI CTYRAG 2 cut(s) 149, 309
SmoI CTYRAG 2 cut(s) 149, 309
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 4 cut(s) 7, 455, 485, 540
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 4 cut(s) 42, 73, 102, 505
TaiI ACGT 2 cut(s) 88, 123
TaqI TCGA 5 cut(s) 48, 310, 347, 490, 516
TasI AATT 4 cut(s) 7, 455, 485, 540
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 378, 539
Tru9I TTAA 2 cut(s) 378, 539
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 99
XapI RAATTY 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.