Prupe.6G045600_v2.0.a1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011271
Physical Location & Seq
Forward (+)
3298076 .. 3300976
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G045600.3

Sequence Viewer

Length: 570 bp
ATGACTGACTCCATGGAAACATCAGTTCCTGTTCCCTGCACGAATTCACAAATCCCGGTCGATCTTTTTGTGTCCAAGAAACATCCTGGCTTGCCAAGTGGTGAATTGGGTTTCGTTGATTCTTCTGGTAACCCCGTTTACAAGGTCACTCGTCAATCTTTGACGTCTTCATCTAATAAGCGTGTGTTGCTTGACGCCGCCGGAAATCCTCGGTTTGCTTTGTGCCGTAACGATAAGGGATGTTGGCAAGGATATAAGGGTGGTGATGCTGGGGAGAAGGACTTGGTGTTCAGAGTGAAGAGGACGAAAAGTAAACTTACCAGAACTGAGTTGGAGATTTTTCTTGTTGGTGAGAATTCAGCAGATTCAACCTGTGATTTCAAAGTGAAAGGCTTCCCTTACCAAAGATCTTGCACAATCTACATAGGCAATGACATAGTTGCTCAGACTAGTCTGATGTACAAATTGAACCAGCTTTTTCCAAAGAGGGGAAAGTTTCGATTGACTATATTTCCCGGATCTGTCGATCATGCTTTGGTTGCGGCCTTGATTGTAATATTTCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

190

Amino Acids

20.83

Weight (kDa)

9.22

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AciI CCGC 2 cut(s) 198, 542
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 2 cut(s) 43, 355
AcyI GRCGYC 2 cut(s) 164, 195
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 3 cut(s) 369, 382, 469
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 1 cut(s) 85
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 543
ApoI RAATTY 2 cut(s) 43, 355
Asp700I GAANNNNTTC 1 cut(s) 392
AsuC2I CCSGG 2 cut(s) 56, 516
AsuHPI GGTGA 3 cut(s) 113, 275, 362
BbsI GAAGAC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 87
BcnI CCSGG 2 cut(s) 56, 516
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 1 cut(s) 450
BglII AGATCT 1 cut(s) 407
BisI GCNGC 2 cut(s) 198, 543
BlsI GCNGC 2 cut(s) 199, 544
Bme1390I CCNGG 3 cut(s) 56, 87, 516
BmrFI CCNGG 3 cut(s) 56, 87, 516
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 2 cut(s) 56, 516
BsaHI GRCGYC 2 cut(s) 164, 195
BsaJI CCNNGG 2 cut(s) 12, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 12, 209
BseGI GGATG 2 cut(s) 82, 245
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 318, 458
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 56, 201, 516
BslI CCNNNNNNNGG 1 cut(s) 488
BsnI GGCC 1 cut(s) 545
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 61, 407, 518, 526
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 198, 542
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 319, 457
BspPI GGATC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 12, 209
BssMI GATC 4 cut(s) 61, 407, 518, 526
BssNI GRCGYC 2 cut(s) 164, 195
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 2 cut(s) 164, 195
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 327, 444
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 82, 245
BstKTI GATC 4 cut(s) 64, 410, 521, 529
BstMBI GATC 4 cut(s) 61, 407, 518, 526
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 187, 539
BstNI CCWGG 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 54, 85, 514
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 407, 518
BstYI RGATCY 2 cut(s) 407, 518
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 82, 245
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 29
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 460
CviAII CATG 2 cut(s) 13, 530
CviJI RGCY 4 cut(s) 90, 393, 475, 545
CviKI_1 RGCY 4 cut(s) 90, 393, 475, 545
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 2 cut(s) 327, 444
DpnI GATC 4 cut(s) 63, 409, 520, 528
DpnII GATC 4 cut(s) 61, 407, 518, 526
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoRI GAATTC 2 cut(s) 43, 355
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 16, 533
FaiI YATR 6 cut(s) 14, 255, 425, 437, 509, 531
FatI CATG 2 cut(s) 12, 529
Fnu4HI GCNGC 2 cut(s) 198, 543
FokI GGATG 2 cut(s) 69, 252
Fsp4HI GCNGC 2 cut(s) 198, 543
FspBI CTAG 1 cut(s) 450
GluI GCNGC 2 cut(s) 198, 543
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 545
HapII CCGG 3 cut(s) 56, 201, 516
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 2 cut(s) 164, 195
Hin1II CATG 2 cut(s) 16, 533
HinfI GANTC 3 cut(s) 8, 119, 365
HpaII CCGG 3 cut(s) 56, 201, 516
HphI GGTGA 3 cut(s) 113, 275, 362
Hpy166II GTNNAC 2 cut(s) 139, 314
Hpy188I TCNGA 3 cut(s) 293, 447, 456
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 2 cut(s) 139, 314
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 39, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 539
HpyF3I CTNAG 2 cut(s) 327, 444
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 2 cut(s) 164, 195
Hsp92II CATG 2 cut(s) 16, 533
Kzo9I GATC 4 cut(s) 61, 407, 518, 526
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 128, 145, 227
MalI GATC 4 cut(s) 63, 409, 520, 528
MboI GATC 4 cut(s) 61, 407, 518, 526
MboII GAAGA 3 cut(s) 114, 159, 310
MflI RGATCY 2 cut(s) 407, 518
MluCI AATT 4 cut(s) 43, 104, 355, 464
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 3 cut(s) 219, 294, 480
MroXI GAANNNNTTC 1 cut(s) 392
MspI CCGG 3 cut(s) 56, 201, 516
MspR9I CCNGG 3 cut(s) 56, 87, 516
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 187, 539
NciI CCSGG 2 cut(s) 56, 516
NcoI CCATGG 1 cut(s) 12
NdeII GATC 4 cut(s) 61, 407, 518, 526
NlaIII CATG 2 cut(s) 16, 533
NmuCI GTSAC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 119, 365
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 2 cut(s) 199, 544
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 85
PspEI GGTNACC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 2 cut(s) 407, 518
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SatI GCNGC 2 cut(s) 198, 543
Sau3AI GATC 4 cut(s) 61, 407, 518, 526
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 3 cut(s) 56, 87, 516
SetI ASST 4 cut(s) 147, 167, 374, 477
SfaNI GCATC 1 cut(s) 256
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 4 cut(s) 43, 104, 355, 464
SsiI CCGC 2 cut(s) 198, 542
SspI AATATT 1 cut(s) 558
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 54, 85, 514
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 60, 499, 525
TasI AATT 4 cut(s) 43, 104, 355, 464
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 200, 545
TfiI GAWTC 2 cut(s) 119, 365
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 2 cut(s) 43, 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 450
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.