pycom11g04990

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011271
Physical Location & Seq
Reverse (-)
3876756 .. 3878486
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g04990.2

Sequence Viewer

Length: 567 bp
ATGGCTGACATCGTTCCAGCGTCAGTCCCTGTTCATCCTACGAGCTCACAAATCCCGGTCGATCTCTTTGTCTCCAAGAAACATCCCGGCCTTCCACGTGGCGAATTGGGTTTCCTCGATTCCTCCGGCGAGACCGTTTACAAAGTCACCCATCAATCTCTGAAGACTTCTTCATACAAGCGCGTGCTGCTTGACGCCGCCGGAAATCCTCTGTTTTCTTTGCGCCGTAAAGATCATGGAAGCTGGGAAGGATACAAAGGGGGAGATAGTGAGGAGAAGGACTTGAAATTTAGAGTGAAGAGGACGAAAAATAAGCTCACCAGAACTGAGTTGGAAGTGTTTCTTGTTGGTGAGAACTCGTCAGATTCAGCCGATTTCAAAGTGAAGGGCTTTCCTTTCCAGAAATCTTGCACCATCTACAGAGGCAATGAGATAGTTGCTCAGACGAGTCTTATGTACAAATTGCACCAGCTTATGCCAAAGAGAGGAAAATTTCGACTAACTATATTTCCTGGACCCGTGGATCATGCTTTGGTAGCGGCCTTGATTGTAATATTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

189

Amino Acids

20.99

Weight (kDa)

9.57

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 198, 539
AclWI GGATC 1 cut(s) 531
AcsI RAATTY 2 cut(s) 287, 491
AcuI CTGAAG 1 cut(s) 182
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 286, 379
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 4 cut(s) 45, 243, 316, 472
AluI AGCT 4 cut(s) 45, 243, 316, 472
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 76, 125
AlwI GGATC 1 cut(s) 531
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 88, 540
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 287, 491
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 183, 225
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 56, 87
AsuHPI GGTGA 3 cut(s) 139, 310, 362
AvaII GGWCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 159, 422
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 513
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 56, 87
BcoDI GTCTC 2 cut(s) 76, 125
BfmI CTRYAG 1 cut(s) 418
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 3 cut(s) 188, 198, 540
BlsI GCNGC 3 cut(s) 189, 199, 541
Bme1390I CCNGG 3 cut(s) 56, 87, 513
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 3 cut(s) 56, 87, 513
BpiI GAAGAC 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 56, 87
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 2 cut(s) 34, 82
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 318, 455
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 90, 542
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 4 cut(s) 56, 87, 126, 201
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 76, 125
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 2 cut(s) 90, 542
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 3 cut(s) 61, 232, 523
BspACI CCGC 2 cut(s) 198, 539
BspANI GGCC 2 cut(s) 90, 542
BspCNI CTCAG 2 cut(s) 319, 454
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 61, 232, 523
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 327, 441
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 34, 82
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 225
BstKTI GATC 3 cut(s) 64, 235, 526
BstMAI GTCTC 2 cut(s) 76, 125
BstMBI GATC 3 cut(s) 61, 232, 523
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 187, 536
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 54, 85, 511
BstSFI CTRYAG 1 cut(s) 418
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 170
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 90, 542
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 2 cut(s) 34, 82
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 183, 225
Cfr13I GGNCC 1 cut(s) 515
CseI GACGC 2 cut(s) 9, 203
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 236, 527
CviJI RGCY 9 cut(s) 5, 45, 90, 243, 316, 371, 390, 472, 542
CviKI_1 RGCY 9 cut(s) 5, 45, 90, 243, 316, 371, 390, 472, 542
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 327, 441
DpnI GATC 3 cut(s) 63, 234, 525
DpnII GATC 3 cut(s) 61, 232, 523
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 515
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 182
Eco72I CACGTG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 2 cut(s) 239, 530
FaiI YATR 6 cut(s) 175, 237, 455, 476, 506, 528
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 11
FatI CATG 2 cut(s) 235, 526
Fnu4HI GCNGC 3 cut(s) 188, 198, 540
FokI GGATG 2 cut(s) 21, 69
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 188, 198, 540
GlaI GCGC 2 cut(s) 182, 224
GluI GCNGC 3 cut(s) 188, 198, 540
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 90, 542
HapII CCGG 4 cut(s) 56, 87, 126, 201
HgaI GACGC 2 cut(s) 9, 203
HhaI GCGC 2 cut(s) 183, 225
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 239, 530
Hin6I GCGC 2 cut(s) 181, 223
HinP1I GCGC 2 cut(s) 181, 223
HinfI GANTC 3 cut(s) 119, 365, 448
HpaII CCGG 4 cut(s) 56, 87, 126, 201
HphI GGTGA 3 cut(s) 139, 310, 362
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 162, 364, 444
Hpy188III TCNNGA 2 cut(s) 400, 560
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 4 cut(s) 101, 242, 271, 379
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 411, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 536
HpyF3I CTNAG 2 cut(s) 327, 441
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 239, 530
HspAI GCGC 2 cut(s) 181, 223
Kzo9I GATC 3 cut(s) 61, 232, 523
Lsp1109I GCAGC 1 cut(s) 174
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 63, 234, 525
MboI GATC 3 cut(s) 61, 232, 523
MboII GAAGA 3 cut(s) 162, 175, 310
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 4 cut(s) 104, 287, 461, 491
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 7 cut(s) 125, 133, 219, 265, 294, 416, 479
MroXI GAANNNNTTC 1 cut(s) 339
MspI CCGG 4 cut(s) 56, 87, 126, 201
MspR9I CCNGG 3 cut(s) 56, 87, 513
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 187, 536
NciI CCSGG 2 cut(s) 56, 87
NdeII GATC 3 cut(s) 61, 232, 523
NlaIII CATG 2 cut(s) 239, 530
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 119, 365
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 3 cut(s) 189, 199, 541
PleI GAGTC 1 cut(s) 456
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 1 cut(s) 456
Ppu21I YACGTR 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 511
PspCI CACGTG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 47
SatI GCNGC 3 cut(s) 188, 198, 540
Sau3AI GATC 3 cut(s) 61, 232, 523
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 3 cut(s) 56, 87, 513
SduI GDGCHC 1 cut(s) 47
SetI ASST 5 cut(s) 47, 100, 245, 318, 474
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 515
Sse9I AATT 4 cut(s) 104, 287, 461, 491
SsiI CCGC 2 cut(s) 198, 539
SspI AATATT 1 cut(s) 555
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 54, 85, 511
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 60, 117, 496
TasI AATT 4 cut(s) 104, 287, 461, 491
TatI WGTACW 1 cut(s) 456
TauI GCSGC 2 cut(s) 200, 542
TfiI GAWTC 2 cut(s) 119, 365
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 23, 162
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 2 cut(s) 287, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.