Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010140.1

Orthogroup ID

OG0011271

Physical Location & Seq

Genomic Coordinates Forward (+)

333 .. 951

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggacaattcagttcttacaaatcccacaaatactgaaattccggtcgatctcttcgtctccaagaaacatccaggcctgccacgtggcgacttgggtttcctggattccgctggtaacgtagttttcaaggtcacccatcaatctctgaagtcatcatccaataagcgcgtgttgcttgatgccgctggaaatcctctgcttactttgtgcctcagtaatagtggatgttggctaggatataagggcggtcaagctgaggagaatcagttcatatttagagtgcagagaacgaaaaacaaacttactcgaattgagctggaggtgtttattggtggtgagatttcaacagaggcaacctgtgattttaaagtgaaagggttcccgttccaaaaatcatgcagcatctatagcggcaatgacatagttgctcaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

146

Amino Acids

15.96

Weight (kDa)

8.37

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30270
fragaria_vesca	FvH4_3g39960
malus_domestica	MD03G1058200.v1.1 MD11G1060400.v1.1 MD17G1185800.v1.1
prunus_persica	Prupe.6G045600_v2.0.a1 Prupe.6G045600_v2.0.a1 Prupe.6G045600_v2.0.a1
pyrus_communis	pycom03g04650 pycom11g04990
rosa_chinensis	RchiOBHm_Chr5g0071971
rosa_laevigata	RLG00000036267
rosa_multiflora	Rmu_sc0010140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009170
rosa_rugosa	Rorug05G0415800
rosa_samantha	Rh5AG471800 Rh5BG491800 Rh5CG515600 Rh5DG503200
rosa_wichuraiana	Rw5G043860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	4 cut(s)	111, 186, 249, 414
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	130, 348
AjnI	CCWGG	2 cut(s)	73, 102
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	257, 319
AluI	AGCT	2 cut(s)	257, 319
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	402
ApoI	RAATTY	1 cut(s)	39
Asp700I	GAANNNNTTC	2 cut(s)	269, 380
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	127, 350
BbrPI	CACGTG	1 cut(s)	86
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	75, 104
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	3 cut(s)	186, 403, 415
BlsI	GCNGC	3 cut(s)	187, 404, 416
Bme1390I	CCNGG	2 cut(s)	75, 104
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	2 cut(s)	75, 104
BmsI	GCATC	2 cut(s)	172, 414
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	2 cut(s)	258, 432
BsaAI	YACGTR	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	75, 104
BseGI	GGATG	3 cut(s)	70, 158, 233
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	229, 249
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	4 cut(s)	111, 186, 249, 414
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	228, 250
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	424
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	75, 104
Bst6I	CTCTTC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	215, 258, 432
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	70, 158, 233
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 411
BstNI	CCWGG	2 cut(s)	75, 104
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	73, 102
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	70, 158, 233
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	171
CviAII	CATG	1 cut(s)	399
CviJI	RGCY	4 cut(s)	78, 235, 257, 319
CviKI_1	RGCY	4 cut(s)	78, 235, 257, 319
DdeI	CTNAG	3 cut(s)	215, 258, 432
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	73, 102
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	402
FaiI	YATR	6 cut(s)	243, 275, 400, 411, 425, 439
FatI	CATG	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	186, 403, 415
FokI	GGATG	3 cut(s)	57, 145, 240
Fsp4HI	GCNGC	3 cut(s)	186, 403, 415
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	3 cut(s)	186, 403, 415
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	107, 265
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	127, 350
Hpy188I	TCNGA	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	85, 120
HpyCH4V	TGCA	2 cut(s)	286, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 411
HpyF3I	CTNAG	3 cut(s)	215, 258, 432
HpySE526I	ACGT	2 cut(s)	85, 120
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	2 cut(s)	172, 414
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	85, 120
MaeIII	GTNAC	2 cut(s)	116, 133
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	46
MluCI	AATT	3 cut(s)	7, 39, 312
MnlI	CCTC	5 cut(s)	207, 224, 253, 316, 346
MroXI	GAANNNNTTC	2 cut(s)	269, 380
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	113, 188
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	75, 104
MvaI	CCWGG	2 cut(s)	75, 104
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	175, 411
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	269, 380
PfeI	GAWTC	2 cut(s)	107, 265
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	187, 404, 416
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	73, 102
PspCI	CACGTG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	73, 102
PspN4I	GGNNCC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	186, 403, 415
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	75, 104
SetI	ASST	8 cut(s)	88, 123, 135, 259, 321, 327, 362, 438
SfaNI	GCATC	2 cut(s)	172, 414
SfcI	CTRYAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	7, 39, 312
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	111, 186, 249, 414
SspMI	CTAG	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	73, 102
TaiI	ACGT	2 cut(s)	88, 123
TaqI	TCGA	2 cut(s)	48, 310
TasI	AATT	3 cut(s)	7, 39, 312
TauI	GCSGC	2 cut(s)	188, 417
TfiI	GAWTC	2 cut(s)	107, 265
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	262
XapI	RAATTY	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	269, 380
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.