Rroxscaffold_1G00009170

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011271
Physical Location & Seq
Forward (+)
11577389 .. 11584893
7505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009170.1

Sequence Viewer

Length: 651 bp
ATGGACAATTCAGTTCTTACAAATCCCACAAATTCTGAGATTCCGGTCGATCTCTTCGTCTCCAAGAAACATCCAGGCCTGCCACGTGGCGACTTGGGTTTCCTGGATTCCGCTGGTAACGTAGTTTTCAAGGTCACCCATCAATCTCTGAAGTCATCATCCAATAAGCGCGTGTTGCTTGATGCCGCTGGAAATCCTCTGCTTACTTTGTGCCTCAGTAATAGTGGATGTTGGCTAGGATATAAGGGCGGTCAAGCTGAGGAGAATCAGTTGATATTTAGAGTGCAGAGAACGAAAAACAAACTTACTCGAATTGAGCTGGAGGTGTTTATTGGTGGTGAGATTTCAACAGAGGCAACCTGTGATTTTAAAGTGAAAGGGTTCCCGTTCCAAAAATCATGCAGCATCTATAGCGGCAATGACATAGTTGCTCAGACTAGTCTTATGTACAAATTGCACCAGCCTTTTCCTAAGAGGGGAAAATTTCAATTGACCATCTTTCCTGGATCTGTCGATCATGCTTTGGTTGCAGCCTTAATTAATGTGCATCCCCAAGCTGCTGACCCTATGCAGCCCCAAGATGTTGAGAATGTACAACCCCAAGCTACGATCTGTGCAGCCCAAGTGCTGACCCGATGCGGCAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

216

Amino Acids

23.57

Weight (kDa)

8.73

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 16 - 180 2.8e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 5 cut(s) 111, 186, 249, 414, 639
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 2 cut(s) 31, 482
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 1 cut(s) 86
AfaI GTAC 2 cut(s) 449, 594
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 130, 348, 488
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 73, 102, 502
AluBI AGCT 4 cut(s) 257, 319, 557, 605
AluI AGCT 4 cut(s) 257, 319, 557, 605
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 514
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 5 cut(s) 402, 530, 557, 571, 617
ApoI RAATTY 2 cut(s) 31, 482
AseI ATTAAT 1 cut(s) 540
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 127, 350
BbrPI CACGTG 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 414, 542, 544, 583, 629
BccI CCATC 2 cut(s) 147, 503
BciT130I CCWGG 3 cut(s) 75, 104, 504
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 2 cut(s) 236, 438
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 8 cut(s) 186, 403, 415, 531, 558, 572, 618, 640
BlsI GCNGC 8 cut(s) 187, 404, 416, 532, 559, 573, 619, 641
Bme1390I CCNGG 3 cut(s) 75, 104, 504
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 3 cut(s) 75, 104, 504
BmsI GCATC 4 cut(s) 172, 414, 556, 626
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 3 cut(s) 75, 104, 504
BseGI GGATG 4 cut(s) 70, 158, 233, 547
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 4 cut(s) 27, 229, 249, 446
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 5 cut(s) 414, 542, 544, 583, 629
BsgI GTGCAG 2 cut(s) 305, 636
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 78
Bsp1407I TGTACA 2 cut(s) 447, 592
Bsp143I GATC 4 cut(s) 49, 506, 514, 609
BspACI CCGC 5 cut(s) 111, 186, 249, 414, 639
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 4 cut(s) 28, 228, 250, 445
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 2 cut(s) 447, 592
BssMI GATC 4 cut(s) 49, 506, 514, 609
Bst2UI CCWGG 3 cut(s) 75, 104, 504
Bst6I CTCTTC 1 cut(s) 59
BstAUI TGTACA 2 cut(s) 447, 592
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 5 cut(s) 36, 215, 258, 432, 471
BstEII GGTNACC 1 cut(s) 133
BstF5I GGATG 4 cut(s) 70, 158, 233, 547
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 4 cut(s) 52, 509, 517, 612
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 49, 506, 514, 609
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 175, 411, 527
BstNI CCWGG 3 cut(s) 75, 104, 504
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 3 cut(s) 73, 102, 502
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 5 cut(s) 414, 542, 544, 583, 629
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 4 cut(s) 70, 158, 233, 547
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 448, 593
CviAII CATG 2 cut(s) 399, 518
CviQI GTAC 2 cut(s) 448, 593
DdeI CTNAG 5 cut(s) 36, 215, 258, 432, 471
DpnI GATC 4 cut(s) 51, 508, 516, 611
DpnII GATC 4 cut(s) 49, 506, 514, 609
DraI TTTAAA 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 73, 102, 502
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 402, 521
FaiI YATR 7 cut(s) 243, 400, 411, 425, 446, 519, 569
FatI CATG 2 cut(s) 398, 517
Fnu4HI GCNGC 8 cut(s) 186, 403, 415, 531, 558, 572, 618, 640
FokI GGATG 4 cut(s) 57, 145, 240, 534
Fsp4HI GCNGC 8 cut(s) 186, 403, 415, 531, 558, 572, 618, 640
FspBI CTAG 2 cut(s) 236, 438
GlaI GCGC 1 cut(s) 170
GluI GCNGC 8 cut(s) 186, 403, 415, 531, 558, 572, 618, 640
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 402, 521
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 3 cut(s) 40, 107, 265
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 127, 350
Hpy188I TCNGA 3 cut(s) 37, 150, 435
HpyCH4IV ACGT 2 cut(s) 85, 120
HpyCH4V TGCA 7 cut(s) 286, 402, 457, 530, 547, 571, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 411, 527
HpyF3I CTNAG 5 cut(s) 36, 215, 258, 432, 471
HpySE526I ACGT 2 cut(s) 85, 120
Hsp92II CATG 2 cut(s) 402, 521
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 4 cut(s) 49, 506, 514, 609
Lsp1109I GCAGC 5 cut(s) 414, 542, 544, 583, 629
LweI GCATC 4 cut(s) 172, 414, 556, 626
MaeI CTAG 2 cut(s) 236, 438
MaeII ACGT 2 cut(s) 85, 120
MaeIII GTNAC 2 cut(s) 116, 133
MalI GATC 4 cut(s) 51, 508, 516, 611
MboI GATC 4 cut(s) 49, 506, 514, 609
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 1 cut(s) 506
MluCI AATT 7 cut(s) 7, 31, 312, 452, 482, 488, 537
MnlI CCTC 6 cut(s) 207, 224, 253, 316, 346, 468
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 3 cut(s) 369, 536, 540
MspA1I CMGCKG 2 cut(s) 113, 188
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 75, 104, 504
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 3 cut(s) 75, 104, 504
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 175, 411, 527
NdeII GATC 4 cut(s) 49, 506, 514, 609
NlaIII CATG 2 cut(s) 402, 521
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 133
PacI TTAATTAA 1 cut(s) 540
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 40, 107, 265
PfoI TCCNGGA 2 cut(s) 102, 502
PkrI GCNGC 8 cut(s) 187, 404, 416, 532, 559, 573, 619, 641
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
PshBI ATTAAT 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 73, 102, 502
PspCI CACGTG 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 133
PspGI CCWGG 3 cut(s) 73, 102, 502
PspN4I GGNNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 506
RsaI GTAC 2 cut(s) 449, 594
RsaNI GTAC 2 cut(s) 448, 593
SaqAI TTAA 3 cut(s) 369, 536, 540
SatI GCNGC 8 cut(s) 186, 403, 415, 531, 558, 572, 618, 640
Sau3AI GATC 4 cut(s) 49, 506, 514, 609
ScrFI CCNGG 3 cut(s) 75, 104, 504
SetI ASST 9 cut(s) 88, 123, 135, 259, 321, 327, 362, 559, 607
SfaNI GCATC 4 cut(s) 172, 414, 556, 626
SfcI CTRYAG 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 7 cut(s) 7, 31, 312, 452, 482, 488, 537
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 5 cut(s) 111, 186, 249, 414, 639
SspMI CTAG 2 cut(s) 236, 438
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 73, 102, 502
TaiI ACGT 2 cut(s) 88, 123
TaqI TCGA 3 cut(s) 48, 310, 513
TasI AATT 7 cut(s) 7, 31, 312, 452, 482, 488, 537
TatI WGTACW 2 cut(s) 447, 592
TauI GCSGC 3 cut(s) 188, 417, 642
TfiI GAWTC 3 cut(s) 40, 107, 265
Tru1I TTAA 3 cut(s) 369, 536, 540
Tru9I TTAA 3 cut(s) 369, 536, 540
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 5 cut(s) 402, 530, 557, 571, 617
Tsp45I GTSAC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 31, 482
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 236, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.