MD17G1185800.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011271
Physical Location & Seq
Reverse (-)
22053606 .. 22054067
462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1185800.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGCTGACATCGTTCCAGCTTCAGCCCTTGTTCATCCCACGAGCTCACAAATCCCGGTCGATCTCTTTGTCTCCAAGAAATATCTCGGCCTTCCACATGGCGAATTGGGTTTCCTCGATTCCTCCGGCGACACCGTTTACAAAGTCACCCATCAATCTCCCAAGATTTCTTCTCACAAGCGCGTGCTGCTTGACGCCTCCGGAAATCCTCTATTTTCTTTGCACCGTAAAGATCATGAAAGCTTGGAAGGATACAAAGGGGGAGATAGTGAGGAGAAAGACTTGAAATTTAGAGTGAAGAGAACGAAAAATAAGCTTACCAGAACTGAGTTGGAAGTGTTTCTTGTTGGTGAAAACTCAGCAGATCCAGCCTGTGATTTCAAAGTGAAGGGTTTTCCTTTCCAAAAATCTTGCACCATCTACAAAGGCAATGAGATAGTTGCTCAGACGAGGGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

154

Amino Acids

17.01

Weight (kDa)

8.48

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 20 - 151 3e-27 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 200
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 195
AgsI TTSAA 2 cut(s) 286, 382
AluBI AGCT 4 cut(s) 20, 45, 243, 316
AluI AGCT 4 cut(s) 20, 45, 243, 316
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 139, 362
BanII GRGCYC 1 cut(s) 47
BauI CACGAG 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 159, 425
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 436
BseAI TCCGGA 1 cut(s) 200
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 3 cut(s) 318, 372, 458
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 3 cut(s) 56, 126, 201
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 61, 232, 364
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 319, 371, 457
BspEI TCCGGA 1 cut(s) 200
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 235
BspPI GGATC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 436
BssMI GATC 3 cut(s) 61, 232, 364
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 136, 227
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 327, 358, 444
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 3 cut(s) 64, 235, 367
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 3 cut(s) 61, 232, 364
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 187, 368
BstSCI CCNGG 1 cut(s) 54
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 183
CseI GACGC 1 cut(s) 203
CviAII CATG 2 cut(s) 98, 236
CviJI RGCY 8 cut(s) 5, 20, 26, 45, 90, 243, 316, 371
CviKI_1 RGCY 8 cut(s) 5, 20, 26, 45, 90, 243, 316, 371
DdeI CTNAG 3 cut(s) 327, 358, 444
DpnI GATC 3 cut(s) 63, 234, 366
DpnII GATC 3 cut(s) 61, 232, 364
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 2 cut(s) 101, 239
FaiI YATR 2 cut(s) 99, 237
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 2 cut(s) 97, 235
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 56, 126, 201
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 101, 239
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 2 cut(s) 241, 314
HinfI GANTC 1 cut(s) 119
HpaII CCGG 3 cut(s) 56, 126, 201
HphI GGTGA 2 cut(s) 139, 362
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 2 cut(s) 201, 236
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 101, 242, 382
HpyCH4III ACNGT 2 cut(s) 136, 227
HpyCH4V TGCA 2 cut(s) 223, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 368
HpyF3I CTNAG 3 cut(s) 327, 358, 444
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 101, 239
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 3 cut(s) 61, 232, 364
LpnPI CCDG 7 cut(s) 30, 69, 139, 214, 334, 381, 385
Lsp1109I GCAGC 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 63, 234, 366
MboI GATC 3 cut(s) 61, 232, 364
MboII GAAGA 2 cut(s) 162, 310
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 104, 287
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 125, 133, 208, 219, 265, 444
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 460
MspI CCGG 3 cut(s) 56, 126, 201
MspR9I CCNGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 187, 368
NciI CCSGG 1 cut(s) 56
NdeII GATC 3 cut(s) 61, 232, 364
NlaIII CATG 2 cut(s) 101, 239
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 145
PagI TCATGA 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 364
SacI GAGCTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 3 cut(s) 61, 232, 364
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 22, 47, 245, 318
Sse9I AATT 2 cut(s) 104, 287
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 136, 227
TaqI TCGA 2 cut(s) 60, 117
TasI AATT 2 cut(s) 104, 287
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 23, 252
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.