RchiOBHm_Chr5g0071971

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011271
Physical Location & Seq
Reverse (-)
77778071 .. 77780636
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34696

Sequence Viewer

Length: 558 bp
ATGGACAATTCAGTTCTTACAAATCCCACAAATACTGAAATTCCGGTCGATCTCTTTGTCTCCAAGAAACATCCAGGCCTGCCACGTGGCGACTTGGGTTTCCTAGATTCCGCTGGTAACGTAGTTTTCAAGGTCACCCATCAATCTCTGAAGTCATCATCCAATAAGCGCGTGTTGCTTGATGCCGCTGGAAATCCTCTGCTTACTTTGTGCCTCAGTAATAGTGGATGTTGGCTAGGATATAAGGGCGGTCAAGCTGAGGAGAATCAGTTCATATTTAGAGTGCAGAGAACGAAAAACAAACTTACTCGAATTGAGCTGGAGGTGTTTATTGGTGGTGAGATTTCAACAGAGGCAACCTGTGATTTTAAAGTGAAAGGGTTCCCGTTCCAAAAATCATGCAGCATCTATAGCGGCAATGACATAGTTGCTCAGACTAGTCTTATGTACAAATTGCACCAGCCTTTTCCCAAGAGGGGAAAATTTCGATTGACCATCTTTCCTGGATCTGTCGATCATGCATTGGTTGCAGCCTTAATTGTAATATTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

185

Amino Acids

20.38

Weight (kDa)

9.08

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 16 - 183 4.4e-34 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 4 cut(s) 111, 186, 249, 414
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 2 cut(s) 39, 482
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 1 cut(s) 86
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 130, 348
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 2 cut(s) 73, 502
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 257, 319
AluI AGCT 2 cut(s) 257, 319
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 514
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 402, 530
ApoI RAATTY 2 cut(s) 39, 482
Asp700I GAANNNNTTC 2 cut(s) 269, 380
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 127, 350
BbrPI CACGTG 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 414, 542
BccI CCATC 2 cut(s) 147, 503
BciT130I CCWGG 2 cut(s) 75, 504
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 104, 236, 438
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 4 cut(s) 186, 403, 415, 531
BlsI GCNGC 4 cut(s) 187, 404, 416, 532
Bme1390I CCNGG 2 cut(s) 75, 504
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 75, 504
BmsI GCATC 2 cut(s) 172, 414
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 75, 504
BseGI GGATG 3 cut(s) 70, 158, 233
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 3 cut(s) 229, 249, 446
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 414, 542
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 3 cut(s) 49, 506, 514
BspACI CCGC 4 cut(s) 111, 186, 249, 414
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 3 cut(s) 228, 250, 445
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 447
BssMI GATC 3 cut(s) 49, 506, 514
Bst2UI CCWGG 2 cut(s) 75, 504
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 447
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 215, 258, 432
BstEII GGTNACC 1 cut(s) 133
BstF5I GGATG 3 cut(s) 70, 158, 233
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 52, 509, 517
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 49, 506, 514
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 175, 411, 527
BstNI CCWGG 2 cut(s) 75, 504
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 73, 502
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 414, 542
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 70, 158, 233
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 448
CviAII CATG 2 cut(s) 399, 518
CviJI RGCY 6 cut(s) 78, 235, 257, 319, 463, 533
CviKI_1 RGCY 6 cut(s) 78, 235, 257, 319, 463, 533
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 3 cut(s) 215, 258, 432
DpnI GATC 3 cut(s) 51, 508, 516
DpnII GATC 3 cut(s) 49, 506, 514
DraI TTTAAA 1 cut(s) 370
Eco147I AGGCCT 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 73, 502
EcoT22I ATGCAT 1 cut(s) 523
FaeI CATG 2 cut(s) 402, 521
FaiI YATR 7 cut(s) 243, 275, 400, 411, 425, 446, 519
FatI CATG 2 cut(s) 398, 517
Fnu4HI GCNGC 4 cut(s) 186, 403, 415, 531
FokI GGATG 3 cut(s) 57, 145, 240
Fsp4HI GCNGC 4 cut(s) 186, 403, 415, 531
FspBI CTAG 3 cut(s) 104, 236, 438
GlaI GCGC 1 cut(s) 170
GluI GCNGC 4 cut(s) 186, 403, 415, 531
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 402, 521
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 107, 265
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 127, 350
Hpy188I TCNGA 2 cut(s) 150, 435
Hpy188III TCNNGA 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 85, 120
HpyCH4V TGCA 5 cut(s) 286, 402, 457, 521, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 411, 527
HpyF3I CTNAG 3 cut(s) 215, 258, 432
HpySE526I ACGT 2 cut(s) 85, 120
Hsp92II CATG 2 cut(s) 402, 521
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 49, 506, 514
Lsp1109I GCAGC 2 cut(s) 414, 542
LweI GCATC 2 cut(s) 172, 414
MaeI CTAG 3 cut(s) 104, 236, 438
MaeII ACGT 2 cut(s) 85, 120
MaeIII GTNAC 2 cut(s) 116, 133
MalI GATC 3 cut(s) 51, 508, 516
MboI GATC 3 cut(s) 49, 506, 514
MflI RGATCY 1 cut(s) 506
MluCI AATT 6 cut(s) 7, 39, 312, 452, 482, 537
MnlI CCTC 6 cut(s) 207, 224, 253, 316, 346, 468
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 2 cut(s) 269, 380
MseI TTAA 2 cut(s) 369, 536
MspA1I CMGCKG 2 cut(s) 113, 188
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 75, 504
MvaI CCWGG 2 cut(s) 75, 504
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 175, 411, 527
NdeII GATC 3 cut(s) 49, 506, 514
NlaIII CATG 2 cut(s) 402, 521
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 523
PceI AGGCCT 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 269, 380
PfeI GAWTC 2 cut(s) 107, 265
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 4 cut(s) 187, 404, 416, 532
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 73, 502
PspCI CACGTG 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 73, 502
PspN4I GGNNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 506
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 2 cut(s) 369, 536
SatI GCNGC 4 cut(s) 186, 403, 415, 531
Sau3AI GATC 3 cut(s) 49, 506, 514
ScrFI CCNGG 2 cut(s) 75, 504
SetI ASST 7 cut(s) 88, 123, 135, 259, 321, 327, 362
SfaNI GCATC 2 cut(s) 172, 414
SfcI CTRYAG 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 6 cut(s) 7, 39, 312, 452, 482, 537
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 111, 186, 249, 414
SspI AATATT 1 cut(s) 546
SspMI CTAG 3 cut(s) 104, 236, 438
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 73, 502
TaiI ACGT 2 cut(s) 88, 123
TaqI TCGA 4 cut(s) 48, 310, 487, 513
TasI AATT 6 cut(s) 7, 39, 312, 452, 482, 537
TatI WGTACW 1 cut(s) 447
TauI GCSGC 2 cut(s) 188, 417
TfiI GAWTC 2 cut(s) 107, 265
Tru1I TTAA 2 cut(s) 369, 536
Tru9I TTAA 2 cut(s) 369, 536
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 402, 530
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 262
XapI RAATTY 2 cut(s) 39, 482
XmnI GAANNNNTTC 2 cut(s) 269, 380
XspI CTAG 3 cut(s) 104, 236, 438
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.