MD03G1058200.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011271
Physical Location & Seq
Reverse (-)
4683799 .. 4686077
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1058200.v1.1.491

Sequence Viewer

Length: 570 bp
ATGGCCGACATCATTCCAGCTTCAGTCCCTGTTGATCCCACGAGTTCACAAATCCCGGTCGATCTCTTTGTCTCCAAGAAGCATCCCGGCGTTCCAGTTGGCGAATTGGGTTTCCTCGATTCCTCCGGCAGCACCGTTTACAAAGTCACCCATCAATCTCTGAAGACCACTTCTCACAAGCGCGTGTTGCTTGACGCCGCCGGAAATCCTCTGTTTTCTTTGCGCCGTAAAGATCATGGGTGCTGGGAAGGATACAAAGGGGGTGATAGTGAAGAGAAAGACTTGAAATTTAGAGTGAATAGAACGAAAAATAAGCTTACCAGAACCGAGTTGGAAGTGTTTCTTGCTGGTGAGGACTCAGCAGATTCAGCCTGTGATTTCAAAGTGAAGGGCTTTCCTTTCCAGAGATCTTGCACCATCTACAGAGGCAATGAGATAGTTGCTGAGACGAGTCTTATGTACAAATTGCACCAGCTTATGCCAAAGAGGGGAAAATTTCGACTGACCATATTTCCTGGACCTGTGGATCATGCTTTGGTAGCAGCCTTGATTGTAATATTTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

190

Amino Acids

20.95

Weight (kDa)

8.94

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 20 - 187 7.5e-37 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 29, 534
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 287, 494
AcuI CTGAAG 2 cut(s) 6, 182
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 2 cut(s) 286, 382
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 3 cut(s) 20, 316, 475
AluI AGCT 3 cut(s) 20, 316, 475
Alw26I GTCTC 2 cut(s) 76, 440
AlwI GGATC 2 cut(s) 29, 534
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 129, 542
ApoI RAATTY 2 cut(s) 287, 494
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 183, 225
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 2 cut(s) 56, 87
AsuHPI GGTGA 3 cut(s) 139, 275, 362
AvaII GGWCC 1 cut(s) 518
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 141, 554
BccI CCATC 2 cut(s) 159, 425
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 56, 87
BcoDI GTCTC 2 cut(s) 76, 440
BfmI CTRYAG 1 cut(s) 421
BfuI GTATCC 1 cut(s) 245
BglII AGATCT 1 cut(s) 407
BisI GCNGC 3 cut(s) 130, 198, 543
BlsI GCNGC 3 cut(s) 131, 199, 544
Bme1390I CCNGG 3 cut(s) 56, 87, 516
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmrFI CCNGG 3 cut(s) 56, 87, 516
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 56, 87
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 516
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 372, 435
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 141, 554
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 4 cut(s) 56, 87, 126, 201
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 76, 440
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 5 cut(s) 34, 61, 232, 407, 526
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 371, 436
BspFNI CGCG 1 cut(s) 183
BspPI GGATC 2 cut(s) 29, 534
BsrDI GCAATG 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 1 cut(s) 95
BssMI GATC 5 cut(s) 34, 61, 232, 407, 526
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 358, 444
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 225
BstKTI GATC 5 cut(s) 37, 64, 235, 410, 529
BstMAI GTCTC 2 cut(s) 76, 440
BstMBI GATC 5 cut(s) 34, 61, 232, 407, 526
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 187, 368, 539
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 3 cut(s) 54, 85, 514
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 141, 554
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 183, 225
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 460
CviAII CATG 2 cut(s) 236, 530
CviJI RGCY 7 cut(s) 5, 20, 316, 371, 393, 475, 545
CviKI_1 RGCY 7 cut(s) 5, 20, 316, 371, 393, 475, 545
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 2 cut(s) 358, 444
DpnI GATC 5 cut(s) 36, 63, 234, 409, 528
DpnII GATC 5 cut(s) 34, 61, 232, 407, 526
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 6, 182
EcoRII CCWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 2 cut(s) 239, 533
FaiI YATR 5 cut(s) 237, 458, 479, 509, 531
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 11
FatI CATG 2 cut(s) 235, 529
Fnu4HI GCNGC 3 cut(s) 130, 198, 543
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 130, 198, 543
GlaI GCGC 2 cut(s) 182, 224
GluI GCNGC 3 cut(s) 130, 198, 543
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 56, 87, 126, 201
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 183, 225
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 239, 533
Hin6I GCGC 2 cut(s) 181, 223
HinP1I GCGC 2 cut(s) 181, 223
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 119, 356, 365, 451
HpaII CCGG 4 cut(s) 56, 87, 126, 201
HphI GGTGA 3 cut(s) 139, 275, 362
Hpy166II GTNNAC 2 cut(s) 47, 139
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 403, 563
Hpy8I GTNNAC 2 cut(s) 47, 139
HpyAV CCTTC 2 cut(s) 242, 382
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 414, 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 368, 539
HpyF3I CTNAG 2 cut(s) 358, 444
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 239, 533
HspAI GCGC 2 cut(s) 181, 223
Kzo9I GATC 5 cut(s) 34, 61, 232, 407, 526
Lsp1109I GCAGC 2 cut(s) 141, 554
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 145
MalI GATC 5 cut(s) 36, 63, 234, 409, 528
MboI GATC 5 cut(s) 34, 61, 232, 407, 526
MboII GAAGA 2 cut(s) 175, 284
MflI RGATCY 1 cut(s) 407
MluCI AATT 4 cut(s) 104, 287, 464, 494
MlyI GAGTC 2 cut(s) 350, 460
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 6 cut(s) 125, 133, 219, 346, 419, 480
MroXI GAANNNNTTC 1 cut(s) 339
MspI CCGG 4 cut(s) 56, 87, 126, 201
MspR9I CCNGG 3 cut(s) 56, 87, 516
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 187, 368, 539
NciI CCSGG 2 cut(s) 56, 87
NdeII GATC 5 cut(s) 34, 61, 232, 407, 526
NlaIII CATG 2 cut(s) 239, 533
NmuCI GTSAC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 119, 365
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 3 cut(s) 131, 199, 544
PleI GAGTC 2 cut(s) 350, 459
PpsI GAGTC 2 cut(s) 350, 459
Psp6I CCWGG 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 514
PspPI GGNCC 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SatI GCNGC 3 cut(s) 130, 198, 543
Sau3AI GATC 5 cut(s) 34, 61, 232, 407, 526
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 350, 460
ScrFI CCNGG 3 cut(s) 56, 87, 516
SetI ASST 4 cut(s) 22, 318, 477, 523
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 104, 287, 464, 494
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 54, 85, 514
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 4 cut(s) 60, 117, 499, 564
TasI AATT 4 cut(s) 104, 287, 464, 494
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 119, 365
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 129, 542
Tsp45I GTSAC 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 287, 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.