Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

12928660 .. 12929863

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATACGCCGATGTCACTCTCGGCGGCGCGTGGCCGTATGCTACCTTTTTTAGAGAAGGAGAAATCAGAAGAAGAGTCTGAAACTCTGGAATCGAGTCTCTTACAGCTAATCGACGACAATCGTCGATCATCGTTACAGCTCCGGGAAAAAACCGAGAGATCGAGAAAGGAAGCAATCAGGCACGCGGCGAGAACGGCGGATCTGCTAGTGAAGGCGGTGAACGGAGGAGTAGAGGAATGTTTCGTTAACGAGAAACGGATTGAGTCGGAGATTAGGAATCTTGCCATTACGGTGGCGAAATTCGGCAAACAAACGGATCAGTGGCTTGCCGTCACTCACGCCGTTAATAGCGCCGTAAAGGAAATTGGAGATTTTGAGAATTGGATGAAGACGATGGAGTTTGATTGTAAGAAAATCACTGCTGCAATTCGAAACATTCATGAAGATCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

5.99

Isoelectric Point (pI)

68.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	37 - 149	1.9e-40	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	31, 188
AciI	CCGC	4 cut(s)	26, 188, 200, 218
AclWI	GGATC	2 cut(s)	210, 327
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	302
AluBI	AGCT	2 cut(s)	109, 142
AluI	AGCT	2 cut(s)	109, 142
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	210, 327
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	31, 356
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	5 cut(s)	21, 213, 317, 329, 341
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	357
BisI	GCNGC	3 cut(s)	27, 189, 426
BlsI	GCNGC	3 cut(s)	28, 190, 427
Bme1390I	CCNGG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	2 cut(s)	31, 188
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	5 cut(s)	128, 161, 202, 319, 448
BspACI	CCGC	4 cut(s)	26, 188, 200, 218
BspANI	GGCC	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	31, 188
BspHI	TCATGA	1 cut(s)	442
BspPI	GGATC	2 cut(s)	210, 327
BspT104I	TTCGAA	1 cut(s)	433
BssMI	GATC	5 cut(s)	128, 161, 202, 319, 448
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	186, 330
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	2 cut(s)	31, 188
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	31, 356
BstKTI	GATC	5 cut(s)	131, 164, 205, 322, 451
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	5 cut(s)	128, 161, 202, 319, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	2 cut(s)	31, 188
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	329, 420
Cac8I	GCNNGC	2 cut(s)	186, 330
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	31, 356
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	4 cut(s)	36, 109, 142, 328
CviKI_1	RGCY	4 cut(s)	36, 109, 142, 328
DpnI	GATC	5 cut(s)	130, 163, 204, 321, 450
DpnII	GATC	5 cut(s)	128, 161, 202, 319, 448
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	215
FaeI	CATG	1 cut(s)	446
FaiI	YATR	2 cut(s)	41, 444
FatI	CATG	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	27, 189, 426
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	27, 189, 426
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	2 cut(s)	30, 355
GluI	GCNGC	3 cut(s)	27, 189, 426
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	2 cut(s)	31, 356
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	2 cut(s)	29, 354
HinP1I	GCGC	2 cut(s)	29, 354
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	5 cut(s)	77, 92, 97, 266, 280
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	223, 250
Hpy188I	TCNGA	3 cut(s)	70, 82, 271
Hpy188III	TCNNGA	3 cut(s)	89, 165, 443
Hpy8I	GTNNAC	2 cut(s)	223, 250
Hpy99I	CGWCG	2 cut(s)	119, 129
HpyAV	CCTTC	2 cut(s)	52, 208
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	2 cut(s)	29, 354
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	128, 161, 202, 319, 448
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	74, 158, 166
Lsp1109I	GCAGC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	15, 135, 334
MalI	GATC	5 cut(s)	130, 163, 204, 321, 450
MboI	GATC	5 cut(s)	128, 161, 202, 319, 448
MboII	GAAGA	4 cut(s)	83, 86, 403, 458
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	4 cut(s)	302, 366, 382, 429
MlyI	GAGTC	3 cut(s)	86, 106, 275
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	2 cut(s)	221, 229
MseI	TTAA	2 cut(s)	249, 348
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	31, 188
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	128, 161, 202, 319, 448
NlaIII	CATG	1 cut(s)	446
NmuCI	GTSAC	2 cut(s)	15, 334
NspV	TTCGAA	1 cut(s)	433
PagI	TCATGA	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	92, 280
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	28, 190, 427
PleI	GAGTC	3 cut(s)	85, 105, 274
PpsI	GAGTC	3 cut(s)	85, 105, 274
PshAI	GACNNNNGTC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	249, 348
SatI	GCNGC	3 cut(s)	27, 189, 426
Sau3AI	GATC	5 cut(s)	128, 161, 202, 319, 448
SchI	GAGTC	3 cut(s)	86, 106, 275
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	3 cut(s)	49, 111, 144
SfuI	TTCGAA	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	4 cut(s)	302, 366, 382, 429
SsiI	CCGC	4 cut(s)	26, 188, 200, 218
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	5 cut(s)	95, 114, 127, 164, 433
TasI	AATT	4 cut(s)	302, 366, 382, 429
TauI	GCSGC	2 cut(s)	29, 191
TfiI	GAWTC	2 cut(s)	92, 280
Tru1I	TTAA	2 cut(s)	249, 348
Tru9I	TTAA	2 cut(s)	249, 348
TscAI	CASTG	2 cut(s)	329, 427
TseFI	GTSAC	2 cut(s)	15, 334
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	15, 334
TspDTI	ATGAA	4 cut(s)	17, 404, 431, 459
TspGWI	ACGGA	3 cut(s)	240, 274, 332
TspRI	CASTG	2 cut(s)	329, 427
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.