Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

3688678 .. 3689572

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATAGCAGTGGATCATAACAATATTAGTGCCTCTTGCGGCCAACGCAAAAGATTGGGTTGTCTTAATTTATACGAGTTACCGTTTTATTTGTACATTTCAAACGACCACAGCATGTACTCACAAACGTCTCTTCCACTGGCCCATGGCGCCGTCGCATCGCCGTCAACCTTCTCGTTCTCGTCGGAGCCAGAGCCGGGAGGTGTAGAAGAAGCTCTGCTCCAGCTCGTCCAGGATCACCACCACGCCTCCCTGAGACTCCGCGACGCCACCGAGAAGGCGAAGAAGGACGCGATCAAGAAGGCAGCGCGTGCGGCGGGCCTGATGGTGGAGGCGGTGAACGGCGGGGTGCAAGAGGCGTTCGTAAACGAGAAGCGAATCGAGTATGAAATTAGGGCTTTGGCTGCCACCATTGCACGATTCAGCAAACAGACCGATCAGTGGCTTTCTGTCACTCACTCTATGAACACTGCCATCAAGGAAATTGGAGATTTTGAGAACTGGATGAAGATTATGGAATTTGATTGTAAAAGCATCACTGCAGCCATCCACAATATTCACCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

190

Amino Acids

20.97

Weight (kDa)

6.3

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	3 cut(s)	264, 293, 310
AciI	CCGC	6 cut(s)	39, 262, 314, 317, 335, 345
AclWI	GGATC	2 cut(s)	21, 243
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	518
AcyI	GRCGYC	2 cut(s)	150, 267
AfaI	GTAC	2 cut(s)	95, 119
AfiI	CCNNNNNNNGG	3 cut(s)	197, 328, 441
AgsI	TTSAA	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	215, 226
AluI	AGCT	2 cut(s)	215, 226
Alw26I	GTCTC	2 cut(s)	135, 250
AlwI	GGATC	2 cut(s)	21, 243
AoxI	GGCC	3 cut(s)	40, 141, 319
ApeKI	GCWGC	3 cut(s)	305, 404, 542
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	152, 310
AspS9I	GGNCC	2 cut(s)	142, 319
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	230, 349, 551
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	317, 391, 554
BccI	CCATC	3 cut(s)	319, 482, 554
BceAI	ACGGC	3 cut(s)	137, 148, 358
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	135, 250
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	5 cut(s)	40, 306, 315, 405, 543
BlsI	GCNGC	5 cut(s)	41, 307, 316, 406, 544
Bme1390I	CCNGG	2 cut(s)	198, 233
BmgT120I	GGNCC	2 cut(s)	142, 319
BmiI	GGNNCC	2 cut(s)	151, 189
BmrFI	CCNGG	2 cut(s)	198, 233
BmsI	GCATC	2 cut(s)	167, 543
BpmI	CTGGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	198
BsaHI	GRCGYC	2 cut(s)	150, 267
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 328, 441
Bse1I	ACTGG	2 cut(s)	144, 506
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	510, 546
BseLI	CCNNNNNNNGG	3 cut(s)	197, 328, 441
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	144, 506
BseXI	GCAGC	3 cut(s)	317, 391, 554
Bsh1236I	CGCG	3 cut(s)	264, 293, 310
BshFI	GGCC	3 cut(s)	42, 143, 321
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	197, 328, 441
BsmAI	GTCTC	2 cut(s)	135, 250
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	42, 143, 321
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	13, 235, 294, 436
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	6 cut(s)	39, 262, 314, 317, 335, 345
BspANI	GGCC	3 cut(s)	42, 143, 321
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	3 cut(s)	264, 293, 310
BspLI	GGNNCC	2 cut(s)	151, 189
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	21, 243
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	144, 506
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	4 cut(s)	13, 235, 294, 436
BssNI	GRCGYC	2 cut(s)	150, 267
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	2 cut(s)	150, 267
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	312, 319
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	510, 546
BstFNI	CGCG	3 cut(s)	264, 293, 310
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 310
BstKTI	GATC	4 cut(s)	16, 238, 297, 439
BstMAI	GTCTC	2 cut(s)	135, 250
BstMBI	GATC	4 cut(s)	13, 235, 294, 436
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 149, 311, 314, 404, 413
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	196, 231
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	3 cut(s)	264, 293, 310
BstV1I	GCAGC	3 cut(s)	317, 391, 554
BsuRI	GGCC	3 cut(s)	42, 143, 321
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	510, 546
BtsI	GCAGTG	3 cut(s)	15, 468, 537
BtsIMutI	CAGTG	5 cut(s)	15, 137, 446, 468, 537
Cac8I	GCNNGC	2 cut(s)	312, 319
CfoI	GCGC	2 cut(s)	152, 310
Cfr13I	GGNCC	2 cut(s)	142, 319
CseI	GACGC	2 cut(s)	275, 299
Csp6I	GTAC	2 cut(s)	94, 118
CviAII	CATG	3 cut(s)	115, 146, 567
CviQI	GTAC	2 cut(s)	94, 118
DdeI	CTNAG	1 cut(s)	254
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	4 cut(s)	15, 237, 296, 438
DpnII	GATC	4 cut(s)	13, 235, 294, 436
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	118, 149, 570
FaiI	YATR	8 cut(s)	18, 73, 116, 147, 387, 464, 515, 568
FatI	CATG	3 cut(s)	114, 145, 566
FauI	CCCGC	2 cut(s)	310, 338
Fnu4HI	GCNGC	5 cut(s)	40, 306, 315, 405, 543
FokI	GGATG	2 cut(s)	517, 533
Fsp4HI	GCNGC	5 cut(s)	40, 306, 315, 405, 543
GlaI	GCGC	2 cut(s)	151, 309
GluI	GCNGC	5 cut(s)	40, 306, 315, 405, 543
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	42, 143, 321
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	2 cut(s)	275, 299
HhaI	GCGC	2 cut(s)	152, 310
Hin1I	GRCGYC	2 cut(s)	150, 267
Hin1II	CATG	3 cut(s)	118, 149, 570
Hin6I	GCGC	2 cut(s)	150, 308
HinP1I	GCGC	2 cut(s)	150, 308
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	258, 378, 420
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	230, 349, 551
Hpy166II	GTNNAC	3 cut(s)	168, 340, 367
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	3 cut(s)	168, 340, 367
Hpy99I	CGWCG	3 cut(s)	158, 187, 269
HpyAV	CCTTC	4 cut(s)	181, 271, 280, 295
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	352, 416, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 149, 311, 314, 404, 413
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	2 cut(s)	150, 267
Hsp92II	CATG	3 cut(s)	118, 149, 570
HspAI	GCGC	2 cut(s)	150, 308
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	13, 235, 294, 436
LmnI	GCTCC	2 cut(s)	187, 225
LpnPI	CCDG	9 cut(s)	125, 204, 210, 218, 236, 245, 266, 335, 487
Lsp1109I	GCAGC	3 cut(s)	317, 391, 554
LweI	GCATC	2 cut(s)	167, 543
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	78, 451
MalI	GATC	4 cut(s)	15, 237, 296, 438
MboI	GATC	4 cut(s)	13, 235, 294, 436
MboII	GAAGA	4 cut(s)	125, 221, 295, 520
MluCI	AATT	4 cut(s)	67, 390, 483, 518
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	43, 194, 259, 325, 349
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	198, 233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	3 cut(s)	264, 293, 310
MwoI	GCNNNNNNNGC	6 cut(s)	45, 149, 311, 314, 404, 413
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	4 cut(s)	13, 235, 294, 436
NlaIII	CATG	3 cut(s)	118, 149, 570
NlaIV	GGNNCC	2 cut(s)	151, 189
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	378, 420
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	5 cut(s)	41, 307, 316, 406, 544
PleI	GAGTC	1 cut(s)	252
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	151, 189
PspPI	GGNCC	2 cut(s)	142, 319
PstI	CTGCAG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	95, 119
RsaNI	GTAC	2 cut(s)	94, 118
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	5 cut(s)	40, 306, 315, 405, 543
Sau3AI	GATC	4 cut(s)	13, 235, 294, 436
Sau96I	GGNCC	2 cut(s)	142, 319
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	198, 233
SetI	ASST	5 cut(s)	131, 173, 205, 217, 228
SfaNI	GCATC	2 cut(s)	167, 543
SfcI	CTRYAG	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	151
Sse9I	AATT	4 cut(s)	67, 390, 483, 518
SsiI	CCGC	6 cut(s)	39, 262, 314, 317, 335, 345
SspDI	GGCGCC	1 cut(s)	149
SspI	AATATT	2 cut(s)	25, 556
StyD4I	CCNGG	2 cut(s)	196, 231
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	381
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	4 cut(s)	67, 390, 483, 518
TatI	WGTACW	2 cut(s)	93, 117
TauI	GCSGC	2 cut(s)	42, 317
TfiI	GAWTC	2 cut(s)	378, 420
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	5 cut(s)	15, 144, 446, 475, 544
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	3 cut(s)	305, 404, 542
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	402, 479, 521
TspRI	CASTG	5 cut(s)	15, 144, 446, 475, 544
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.