Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Forward (+)

3204289 .. 3206159

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G044100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTACTCGCAATCGTCCCTTCCACTCGCCCATGGCGGCGTGGCCTCGTCGTCCTCCTTCTCCTTCTCGTCGGAGCCAGAGCCAGGAGGTGTAGAAGAAGCTCTGCTCCAACTGGTCCAGGACCACCACCAAACCTCCCTCAGACTCCGCGAAGTCACCGAGAAGGCGAAGAAGGACGCGATTAAGAAGGCGGCGCGCGCGGCGGAGCTGATGGTGGACGCAGTGAACGGCGGCGTTCAAGAGTCGTTTGTGAACGAGAAGCGAATTGAGTATGAAATTAGGGCTTTGACCGCCACCATCACTCGCTTCACCAAACAGACCGATCAATGGCTCTCTGTCACTCATTCTATGAACTCCGCCATTAAGGAATTTGGAGATTTTGAGAACTGGATGAAGATCATGGAGTTTGATTGTAAGAATATCACTGCAGCTATTCACAACATTCACCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

152

Amino Acids

16.84

Weight (kDa)

5.85

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	150, 179, 196, 198, 200
AciI	CCGC	8 cut(s)	36, 148, 191, 200, 203, 231, 291, 357
AcsI	RAATTY	1 cut(s)	368
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	83, 327
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	82, 117
AluBI	AGCT	3 cut(s)	101, 208, 431
AluI	AGCT	3 cut(s)	101, 208, 431
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	196, 198, 200
AspS9I	GGNCC	2 cut(s)	115, 121
AsuHPI	GGTGA	3 cut(s)	148, 301, 437
AvaII	GGWCC	2 cut(s)	115, 121
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	205, 305
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	84, 119
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	5 cut(s)	37, 192, 201, 232, 429
BlsI	GCNGC	5 cut(s)	38, 193, 202, 233, 430
Bme1390I	CCNGG	2 cut(s)	84, 119
Bme18I	GGWCC	2 cut(s)	115, 121
BmgT120I	GGNCC	2 cut(s)	115, 121
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	84, 119
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 327
Bse1I	ACTGG	2 cut(s)	117, 392
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	84, 119
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	83, 327
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	117, 392
BsePI	GCGCGC	2 cut(s)	194, 196
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	5 cut(s)	150, 179, 196, 198, 200
BshFI	GGCC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	83, 327
BsnI	GGCC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	322, 396
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	8 cut(s)	36, 148, 191, 200, 203, 231, 291, 357
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	5 cut(s)	150, 179, 196, 198, 200
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	117, 392
BssECI	CCNNGG	1 cut(s)	31
BssHII	GCGCGC	2 cut(s)	194, 196
BssMI	GATC	2 cut(s)	322, 396
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	84, 119
BstC8I	GCNNGC	2 cut(s)	196, 198
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	5 cut(s)	150, 179, 196, 198, 200
BstHHI	GCGC	3 cut(s)	196, 198, 200
BstKTI	GATC	2 cut(s)	325, 399
BstMBI	GATC	2 cut(s)	322, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 200, 290
BstNI	CCWGG	2 cut(s)	84, 119
BstSCI	CCNGG	2 cut(s)	82, 117
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	5 cut(s)	150, 179, 196, 198, 200
BstV1I	GCAGC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	2 cut(s)	228, 423
BtsIMutI	CAGTG	2 cut(s)	228, 423
Cac8I	GCNNGC	2 cut(s)	196, 198
CfoI	GCGC	3 cut(s)	196, 198, 200
Cfr13I	GGNCC	2 cut(s)	115, 121
CseI	GACGC	2 cut(s)	185, 227
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	32, 400, 453
CviJI	RGCY	8 cut(s)	44, 76, 82, 101, 208, 284, 331, 431
CviKI_1	RGCY	8 cut(s)	44, 76, 82, 101, 208, 284, 331, 431
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	324, 398
DpnII	GATC	2 cut(s)	322, 396
EciI	GGCGGA	2 cut(s)	218, 346
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	115, 121
EcoRII	CCWGG	2 cut(s)	82, 117
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	35, 403, 456
FaiI	YATR	5 cut(s)	33, 273, 350, 401, 454
FatI	CATG	3 cut(s)	31, 399, 452
Fnu4HI	GCNGC	5 cut(s)	37, 192, 201, 232, 429
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	5 cut(s)	37, 192, 201, 232, 429
GlaI	GCGC	3 cut(s)	195, 197, 199
GluI	GCNGC	5 cut(s)	37, 192, 201, 232, 429
HaeIII	GGCC	1 cut(s)	44
HgaI	GACGC	2 cut(s)	185, 227
HhaI	GCGC	3 cut(s)	196, 198, 200
Hin1II	CATG	3 cut(s)	35, 403, 456
Hin6I	GCGC	3 cut(s)	194, 196, 198
HinP1I	GCGC	3 cut(s)	194, 196, 198
HinfI	GANTC	2 cut(s)	144, 242
HphI	GGTGA	3 cut(s)	148, 301, 437
Hpy166II	GTNNAC	3 cut(s)	217, 226, 253
Hpy188I	TCNGA	2 cut(s)	73, 143
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	3 cut(s)	217, 226, 253
Hpy99I	CGWCG	2 cut(s)	52, 73
HpyAV	CCTTC	6 cut(s)	29, 67, 73, 157, 166, 181
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 200, 290
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	35, 403, 456
HspAI	GCGC	3 cut(s)	194, 196, 198
Kzo9I	GATC	2 cut(s)	322, 396
LmnI	GCTCC	3 cut(s)	73, 111, 205
LpnPI	CCDG	7 cut(s)	69, 90, 96, 98, 104, 131, 373
Lsp1109I	GCAGC	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	154, 337
MalI	GATC	2 cut(s)	324, 398
MauBI	CGCGCGCG	1 cut(s)	196
MboI	GATC	2 cut(s)	322, 396
MboII	GAAGA	3 cut(s)	107, 181, 406
MluCI	AATT	3 cut(s)	264, 276, 368
MlyI	GAGTC	2 cut(s)	138, 251
MmeI	TCCRAC	2 cut(s)	51, 133
MnlI	CCTC	5 cut(s)	55, 64, 80, 145, 149
MseI	TTAA	2 cut(s)	183, 363
MspR9I	CCNGG	2 cut(s)	84, 119
MvaI	CCWGG	2 cut(s)	84, 119
MvnI	CGCG	5 cut(s)	150, 179, 196, 198, 200
MwoI	GCNNNNNNNGC	3 cut(s)	197, 200, 290
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	322, 396
NlaIII	CATG	3 cut(s)	35, 403, 456
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	154, 337
PauI	GCGCGC	2 cut(s)	194, 196
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	38, 193, 202, 233, 430
PleI	GAGTC	2 cut(s)	138, 250
PpsI	GAGTC	2 cut(s)	138, 250
Psp6I	CCWGG	2 cut(s)	82, 117
PspGI	CCWGG	2 cut(s)	82, 117
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	115, 121
PstI	CTGCAG	1 cut(s)	430
PteI	GCGCGC	2 cut(s)	194, 196
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	183, 363
SatI	GCNGC	5 cut(s)	37, 192, 201, 232, 429
Sau3AI	GATC	2 cut(s)	322, 396
Sau96I	GGNCC	2 cut(s)	115, 121
SchI	GAGTC	2 cut(s)	138, 251
ScrFI	CCNGG	2 cut(s)	84, 119
SetI	ASST	5 cut(s)	91, 103, 137, 210, 433
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	115, 121
Sse9I	AATT	3 cut(s)	264, 276, 368
SsiI	CCGC	8 cut(s)	36, 148, 191, 200, 203, 231, 291, 357
StyD4I	CCNGG	2 cut(s)	82, 117
StyI	CCWWGG	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	264, 276, 368
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	39, 194, 203, 234
Tru1I	TTAA	2 cut(s)	183, 363
Tru9I	TTAA	2 cut(s)	183, 363
TscAI	CASTG	2 cut(s)	228, 430
TseFI	GTSAC	2 cut(s)	154, 337
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	154, 337
TspDTI	ATGAA	3 cut(s)	288, 365, 407
TspRI	CASTG	2 cut(s)	228, 430
VpaK11BI	GGWCC	2 cut(s)	115, 121
XapI	RAATTY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.