Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455359.1

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 382

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 277 bp

atgtacacacaatcttctcttccactcgcccaagtcggcgtgccgtcgacgtcgtcattcttgccggagccggaaccaggtagcatagaagacgctctgctccaattggtccaggaccaccaccacagctccctcaagcttcgcgaacgcacagcagatagggcgaagaaggacgcgatcaagaaggcggcgcgtgcggcggagctgatggtggaggcggtgaacggcggcgttcaagagtcgttcgtaaacgagaagcgaatcgagcttgagattc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

5.56

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	3 cut(s)	144, 176, 193
AciI	CCGC	5 cut(s)	188, 197, 200, 218, 228
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	76, 111
AluBI	AGCT	4 cut(s)	129, 139, 205, 268
AluI	AGCT	4 cut(s)	129, 139, 205, 268
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	109, 115
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	109, 115
BbsI	GAAGAC	1 cut(s)	96
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	28, 241
BciT130I	CCWGG	2 cut(s)	78, 113
BisI	GCNGC	3 cut(s)	189, 198, 229
BlsI	GCNGC	3 cut(s)	190, 199, 230
Bme1390I	CCNGG	2 cut(s)	78, 113
Bme18I	GGWCC	2 cut(s)	109, 115
BmgT120I	GGNCC	2 cut(s)	109, 115
BmiI	GGNNCC	2 cut(s)	69, 75
BmrFI	CCNGG	2 cut(s)	78, 113
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	78, 113
BseLI	CCNNNNNNNGG	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	144, 176, 193
BsiSI	CCGG	2 cut(s)	65, 71
BslI	CCNNNNNNNGG	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	5 cut(s)	188, 197, 200, 218, 228
BspFNI	CGCG	3 cut(s)	144, 176, 193
BspLI	GGNNCC	2 cut(s)	69, 75
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	78, 113
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	41, 195
BstFNI	CGCG	3 cut(s)	144, 176, 193
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 194, 197, 265
BstNI	CCWGG	2 cut(s)	78, 113
BstSCI	CCNGG	2 cut(s)	76, 111
BstUI	CGCG	3 cut(s)	144, 176, 193
BstV2I	GAAGAC	1 cut(s)	96
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	41, 195
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	109, 115
CseI	GACGC	2 cut(s)	101, 182
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	5 cut(s)	70, 129, 139, 205, 268
CviKI_1	RGCY	5 cut(s)	70, 129, 139, 205, 268
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	109, 115
EcoRII	CCWGG	2 cut(s)	76, 111
FaiI	YATR	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	3 cut(s)	189, 198, 229
Fsp4HI	GCNGC	3 cut(s)	189, 198, 229
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	3 cut(s)	189, 198, 229
HapII	CCGG	2 cut(s)	65, 71
HgaI	GACGC	2 cut(s)	101, 182
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	239, 261, 274
HpaII	CCGG	2 cut(s)	65, 71
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	4 cut(s)	6, 48, 223, 250
Hpy188III	TCNNGA	3 cut(s)	143, 181, 236
Hpy8I	GTNNAC	4 cut(s)	6, 48, 223, 250
Hpy99I	CGWCG	3 cut(s)	49, 52, 55
HpyAV	CCTTC	2 cut(s)	163, 178
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 194, 197, 265
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	67, 105, 134, 202
LpnPI	CCDG	6 cut(s)	63, 78, 84, 90, 98, 125
MabI	ACCWGGT	1 cut(s)	76
MaeII	ACGT	1 cut(s)	50
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	4 cut(s)	6, 11, 101, 178
MfeI	CAATTG	1 cut(s)	104
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	143, 208
MspI	CCGG	2 cut(s)	65, 71
MspR9I	CCNGG	2 cut(s)	78, 113
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	78, 113
MvnI	CGCG	3 cut(s)	144, 176, 193
MwoI	GCNNNNNNNGC	4 cut(s)	161, 194, 197, 265
NdeII	GATC	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	69, 75
NruI	TCGCGA	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	261, 274
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	190, 199, 230
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	76, 111
PspGI	CCWGG	2 cut(s)	76, 111
PspN4I	GGNNCC	2 cut(s)	69, 75
PspPI	GGNCC	2 cut(s)	109, 115
PsyI	GACNNNGTC	1 cut(s)	52
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	46
SatI	GCNGC	3 cut(s)	189, 198, 229
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	109, 115
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	78, 113
SetI	ASST	6 cut(s)	53, 82, 131, 141, 207, 270
SexAI	ACCWGGT	1 cut(s)	76
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	109, 115
SmlI	CTYRAG	2 cut(s)	134, 269
SmoI	CTYRAG	2 cut(s)	134, 269
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	5 cut(s)	188, 197, 200, 218, 228
StyD4I	CCNGG	2 cut(s)	76, 111
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	47, 264
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	191, 200, 231
TfiI	GAWTC	2 cut(s)	261, 274
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	109, 115
XmiI	GTMKAC	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.