Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

33950323 .. 33951935

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTACCCCCAACCTTCTCTTCCGCTCGCTTATGGCGGCGTGCCGTCGTCGTCGGCAGCCTTCTCACCGGAGACGGAACCAGGCAGCATCGAAGACGCTCTGCTCCAATTGGTCCAGGACCACCACAACAACTCCATCAAGCTTCGCGAACGCACAGACCGGGAGAAGAAGGACGCGATCAAGAAGGCTGCGCGTGCGGCGGAGCTGATGGTGGAGGCGGTAAACGGCGGCGTGCAAGAAGCGTTCGTAAATGAGAAGCGGATCGAGCATGAGATTCGGGCTTTGGCGGCCACCATTACGCGATTCACAAAGCAAACGGATCACTGGCTCTCCGTCACTAATTCCATCAACTCTGCCATCAAGGAAATTGGGGACTTTGAGAATTGGATGAAGATCATGGAGTTTGATTGTAAGAGCATCACTGCAGCTATACACAACATTCACCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

151

Amino Acids

16.75

Weight (kDa)

5.86

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	37 - 155	4.7e-36	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	4 cut(s)	147, 176, 193, 301
AciI	CCGC	8 cut(s)	23, 36, 197, 200, 218, 228, 259, 287
AclWI	GGATC	2 cut(s)	269, 327
AcoI	YGGCCR	1 cut(s)	288
AfaI	GTAC	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	79, 114
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	142, 205, 428
AluI	AGCT	3 cut(s)	142, 205, 428
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	269, 327
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	56, 84, 188, 425
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	112, 118
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	57, 434
AvaII	GGWCC	2 cut(s)	112, 118
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	68, 96, 175, 437
BccI	CCATC	4 cut(s)	143, 202, 353, 365
BceAI	ACGGC	2 cut(s)	28, 241
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	81, 116
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	8 cut(s)	37, 57, 85, 189, 198, 229, 288, 426
BlsI	GCNGC	8 cut(s)	38, 58, 86, 190, 199, 230, 289, 427
Bme1390I	CCNGG	3 cut(s)	81, 116, 161
Bme18I	GGWCC	2 cut(s)	112, 118
BmgT120I	GGNCC	2 cut(s)	112, 118
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	3 cut(s)	81, 116, 161
BmsI	GCATC	2 cut(s)	96, 426
BpiI	GAAGAC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 314, 344
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	81, 116
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	68, 96, 175, 437
Bsh1236I	CGCG	4 cut(s)	147, 176, 193, 301
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	68, 160
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	177, 261, 319, 393
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	8 cut(s)	23, 36, 197, 200, 218, 228, 259, 287
BspANI	GGCC	1 cut(s)	290
BspFNI	CGCG	4 cut(s)	147, 176, 193, 301
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	2 cut(s)	269, 327
BsrBI	CCGCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	4 cut(s)	177, 261, 319, 393
Bst2UI	CCWGG	2 cut(s)	81, 116
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	4 cut(s)	27, 41, 195, 233
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	4 cut(s)	147, 176, 193, 301
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	180, 264, 322, 396
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	177, 261, 319, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 197, 265, 287
BstNI	CCWGG	2 cut(s)	81, 116
BstSCI	CCNGG	3 cut(s)	79, 114, 159
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	4 cut(s)	147, 176, 193, 301
BstV1I	GCAGC	4 cut(s)	68, 96, 175, 437
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	322, 420
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	4 cut(s)	27, 41, 195, 233
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	112, 118
CseI	GACGC	2 cut(s)	104, 182
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	269, 397
CviJI	RGCY	8 cut(s)	59, 142, 188, 205, 281, 290, 328, 428
CviKI_1	RGCY	8 cut(s)	59, 142, 188, 205, 281, 290, 328, 428
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	4 cut(s)	179, 263, 321, 395
DpnII	GATC	4 cut(s)	177, 261, 319, 393
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	112, 118
EcoRII	CCWGG	2 cut(s)	79, 114
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	272, 400
FaiI	YATR	4 cut(s)	33, 270, 398, 431
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	268, 396
Fnu4HI	GCNGC	8 cut(s)	37, 57, 85, 189, 198, 229, 288, 426
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	8 cut(s)	37, 57, 85, 189, 198, 229, 288, 426
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	8 cut(s)	37, 57, 85, 189, 198, 229, 288, 426
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	68, 160
HgaI	GACGC	2 cut(s)	104, 182
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	272, 400
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	274, 303
HpaII	CCGG	2 cut(s)	68, 160
HphI	GGTGA	2 cut(s)	57, 434
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	146, 181
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	3 cut(s)	49, 52, 55
HpyAV	CCTTC	4 cut(s)	24, 70, 163, 178
HpyCH4V	TGCA	2 cut(s)	235, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 197, 265, 287
Hsp92II	CATG	2 cut(s)	272, 400
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	177, 261, 319, 393
LmnI	GCTCC	2 cut(s)	108, 202
LpnPI	CCDG	7 cut(s)	66, 81, 93, 101, 128, 173, 310
Lsp1109I	GCAGC	4 cut(s)	68, 96, 175, 437
LweI	GCATC	2 cut(s)	96, 426
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	179, 263, 321, 395
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	4 cut(s)	177, 261, 319, 393
MboII	GAAGA	4 cut(s)	11, 104, 178, 403
MfeI	CAATTG	1 cut(s)	107
MluCI	AATT	4 cut(s)	107, 340, 366, 382
MnlI	CCTC	1 cut(s)	208
MspI	CCGG	2 cut(s)	68, 160
MspR9I	CCNGG	3 cut(s)	81, 116, 161
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	81, 116
MvnI	CGCG	4 cut(s)	147, 176, 193, 301
MwoI	GCNNNNNNNGC	4 cut(s)	194, 197, 265, 287
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	4 cut(s)	177, 261, 319, 393
NlaIII	CATG	2 cut(s)	272, 400
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	334
NruI	TCGCGA	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	274, 303
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	8 cut(s)	38, 58, 86, 190, 199, 230, 289, 427
Psp6I	CCWGG	2 cut(s)	79, 114
PspGI	CCWGG	2 cut(s)	79, 114
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	112, 118
PstI	CTGCAG	1 cut(s)	427
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	8 cut(s)	37, 57, 85, 189, 198, 229, 288, 426
Sau3AI	GATC	4 cut(s)	177, 261, 319, 393
Sau96I	GGNCC	2 cut(s)	112, 118
ScrFI	CCNGG	3 cut(s)	81, 116, 161
SetI	ASST	5 cut(s)	16, 144, 207, 430, 451
SfaNI	GCATC	2 cut(s)	96, 426
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	112, 118
Sse9I	AATT	4 cut(s)	107, 340, 366, 382
SsiI	CCGC	8 cut(s)	23, 36, 197, 200, 218, 228, 259, 287
StyD4I	CCNGG	3 cut(s)	79, 114, 159
TaqI	TCGA	2 cut(s)	90, 264
TasI	AATT	4 cut(s)	107, 340, 366, 382
TauI	GCSGC	4 cut(s)	39, 200, 231, 290
TfiI	GAWTC	2 cut(s)	274, 303
TscAI	CASTG	2 cut(s)	329, 427
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	4 cut(s)	56, 84, 188, 425
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	3 cut(s)	89, 322, 332
TspRI	CASTG	2 cut(s)	329, 427
VpaK11BI	GGWCC	2 cut(s)	112, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.