Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

6624158 .. 6625427

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTATTCACTGGCATCTCTTCCACTGGCACATGCTCTCGTGGCATCCTCCTCCTCGTCCAGGATAAATCCAAGTGATCTGGAAGACTCTTTACTCCAATTGGTCCAAGAGCACCACCATGCCTCCCTCAGAATCCACAATCTCACTGAGAAGGCACAGAATGAAGCCACTAAAAAGGCAGTGTGTGTGGCAGAGCTTCTGGTGGAAGCAGTGAACGGTGGGGTGAAAGAGTTGGTTATAAAGGAGAAACGAACTGAGCTTGAAATACGGGCATTGACTGCCACCATTTCCTCCTTTATCCAACAGACTGATCGGTGGCTCTCACTCACTTGTTCTATTAACACTGCCATTAAGGAAATCGGAGACTTTGAGAACTGGATGAAGATAATGGAATTTGATTCTAAAAGCATCAATGCAGCTATCCACAATATTCACCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

148

Amino Acids

16.32

Weight (kDa)

5.95

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	3 cut(s)	196, 259, 419
AluI	AGCT	3 cut(s)	196, 259, 419
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	235, 425
AvaII	GGWCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	23, 53, 417
BpiI	GAAGAC	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	3 cut(s)	15, 30, 380
BseBI	CCWGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	44, 384
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	138, 142, 246
BseNI	ACTGG	3 cut(s)	15, 30, 380
BseRI	GAGGAG	2 cut(s)	40, 43
BseXI	GCAGC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	76, 310
BspCNI	CTCAG	3 cut(s)	139, 141, 247
BsrI	ACTGG	3 cut(s)	15, 30, 380
BssMI	GATC	2 cut(s)	76, 310
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	128, 147, 255
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	44, 384
BstKTI	GATC	2 cut(s)	79, 313
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	2 cut(s)	76, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 278
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	44, 384
BtsI	GCAGTG	3 cut(s)	186, 216, 342
BtsIMutI	CAGTG	6 cut(s)	8, 23, 144, 186, 216, 342
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	2 cut(s)	32, 119
CviJI	RGCY	5 cut(s)	167, 196, 259, 319, 419
CviKI_1	RGCY	5 cut(s)	167, 196, 259, 319, 419
DdeI	CTNAG	3 cut(s)	128, 147, 255
DpnI	GATC	2 cut(s)	78, 312
DpnII	GATC	2 cut(s)	76, 310
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	35, 122
FaiI	YATR	4 cut(s)	33, 120, 239, 442
FatI	CATG	2 cut(s)	31, 118
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	31, 391
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	35, 122
HinfI	GANTC	3 cut(s)	86, 132, 398
HphI	GGTGA	2 cut(s)	235, 425
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	131, 362
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 278
HpyF3I	CTNAG	3 cut(s)	128, 147, 255
Hsp92II	CATG	2 cut(s)	35, 122
Kzo9I	GATC	2 cut(s)	76, 310
LpnPI	CCDG	6 cut(s)	11, 46, 65, 73, 185, 361
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	3 cut(s)	23, 53, 417
MalI	GATC	2 cut(s)	78, 312
MboI	GATC	2 cut(s)	76, 310
MboII	GAAGA	3 cut(s)	11, 95, 394
MfeI	CAATTG	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	98, 392
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	58, 61, 64, 133, 137, 301
MseI	TTAA	2 cut(s)	339, 351
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	41, 278
NdeII	GATC	2 cut(s)	76, 310
NlaIII	CATG	2 cut(s)	35, 122
NspI	RCATGY	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	132, 398
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	339, 351
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	2 cut(s)	76, 310
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	3 cut(s)	198, 261, 421
SfaNI	GCATC	3 cut(s)	23, 53, 417
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	2 cut(s)	98, 392
SspI	AATATT	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	2 cut(s)	98, 392
TfiI	GAWTC	2 cut(s)	132, 398
Tru1I	TTAA	2 cut(s)	339, 351
Tru9I	TTAA	2 cut(s)	339, 351
TscAI	CASTG	6 cut(s)	15, 30, 151, 186, 216, 349
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	177, 395
TspRI	CASTG	6 cut(s)	15, 30, 151, 186, 216, 349
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.