Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Reverse (-)

72430729 .. 72432910

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG518200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTACACACAATCTTCTCTTCCACTCGCCCAAGTCGGCGTGCCGTCGACGTCGTCATTCTTGCCGGAGCCGGAACCAGGTAGCATAGAAGACGCTCTGCTCCAATTGGTCCAGGACCACCACCACAACTCCCTCAAGCTTCGCGAACGCACAGATAGGGCGAAGAAGGACGCTATCAAGAAGGCGGCGCGTGCGGCGGAGCTGATGGTGGAGGCGGTGAACGGCGGCGTTCAAGAGTCGTTCGTAAACGAGAAGCGAATCGAGCTTGAGATTCGGGCTTTGGCGGCCACCATTACCCGATTCACCAAGCAAACGGATCAGTGGCTCACCGTCACTCATTCTATGAACACTGCCATCAAGGTAGAGACTTTTAATTTTTATTTTTTTTTTCTTTCCCGATTTTGTTGTGATGTGGTTTGGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

142

Amino Acids

16.15

Weight (kDa)

6.42

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	36 - 120	1.3e-23	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	2 cut(s)	144, 190
AciI	CCGC	6 cut(s)	185, 194, 197, 215, 225, 284
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	76, 111
AluBI	AGCT	3 cut(s)	139, 202, 265
AluI	AGCT	3 cut(s)	139, 202, 265
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	109, 115
AsuHPI	GGTGA	3 cut(s)	229, 295, 319
AvaII	GGWCC	2 cut(s)	109, 115
BbsI	GAAGAC	1 cut(s)	96
BccI	CCATC	2 cut(s)	199, 362
BceAI	ACGGC	2 cut(s)	28, 238
BciT130I	CCWGG	2 cut(s)	78, 113
BcoDI	GTCTC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	186, 195, 226, 285
BlsI	GCNGC	4 cut(s)	187, 196, 227, 286
Bme1390I	CCNGG	2 cut(s)	78, 113
Bme18I	GGWCC	2 cut(s)	109, 115
BmgT120I	GGNCC	2 cut(s)	109, 115
BmiI	GGNNCC	2 cut(s)	69, 75
BmrFI	CCNGG	2 cut(s)	78, 113
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	119, 287
BsaHI	GRCGYC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	78, 113
BseLI	CCNNNNNNNGG	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	144, 190
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	65, 71
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	316
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	6 cut(s)	185, 194, 197, 215, 225, 284
BspANI	GGCC	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	144, 190
BspLI	GGNNCC	2 cut(s)	69, 75
BspPI	GGATC	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	78, 113
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	41, 192
BstFNI	CGCG	2 cut(s)	144, 190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
BstNI	CCWGG	2 cut(s)	78, 113
BstSCI	CCNGG	2 cut(s)	76, 111
BstUI	CGCG	2 cut(s)	144, 190
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	326, 348
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	41, 192
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	109, 115
CseI	GACGC	2 cut(s)	101, 179
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	7 cut(s)	70, 139, 202, 265, 278, 287, 325
CviKI_1	RGCY	7 cut(s)	70, 139, 202, 265, 278, 287, 325
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	109, 115
EcoRII	CCWGG	2 cut(s)	76, 111
FaiI	YATR	2 cut(s)	86, 344
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	186, 195, 226, 285
Fsp4HI	GCNGC	4 cut(s)	186, 195, 226, 285
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	4 cut(s)	186, 195, 226, 285
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	65, 71
HgaI	GACGC	2 cut(s)	101, 179
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	4 cut(s)	236, 258, 271, 300
HpaII	CCGG	2 cut(s)	65, 71
HphI	GGTGA	3 cut(s)	229, 295, 319
Hpy166II	GTNNAC	4 cut(s)	6, 48, 220, 247
Hpy188III	TCNNGA	4 cut(s)	143, 178, 233, 396
Hpy8I	GTNNAC	4 cut(s)	6, 48, 220, 247
Hpy99I	CGWCG	3 cut(s)	49, 52, 55
HpyAV	CCTTC	2 cut(s)	160, 175
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	3 cut(s)	67, 105, 199
LpnPI	CCDG	6 cut(s)	63, 78, 84, 90, 98, 125
MabI	ACCWGGT	1 cut(s)	76
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	6, 11, 101, 175
MfeI	CAATTG	1 cut(s)	104
MluCI	AATT	2 cut(s)	104, 373
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	143, 205
MseI	TTAA	1 cut(s)	372
MspI	CCGG	2 cut(s)	65, 71
MspR9I	CCNGG	2 cut(s)	78, 113
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	78, 113
MvnI	CGCG	2 cut(s)	144, 190
MwoI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	69, 75
NmuCI	GTSAC	1 cut(s)	331
NruI	TCGCGA	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	258, 271, 300
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	187, 196, 227, 286
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	76, 111
PspGI	CCWGG	2 cut(s)	76, 111
PspN4I	GGNNCC	2 cut(s)	69, 75
PspPI	GGNCC	2 cut(s)	109, 115
PsyI	GACNNNGTC	1 cut(s)	52
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	186, 195, 226, 285
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	109, 115
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	78, 113
SetI	ASST	6 cut(s)	53, 82, 141, 204, 267, 363
SexAI	ACCWGGT	1 cut(s)	76
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	109, 115
SmlI	CTYRAG	2 cut(s)	134, 266
SmoI	CTYRAG	2 cut(s)	134, 266
Sse9I	AATT	2 cut(s)	104, 373
SsiI	CCGC	6 cut(s)	185, 194, 197, 215, 225, 284
StyD4I	CCNGG	2 cut(s)	76, 111
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	47, 261
TasI	AATT	2 cut(s)	104, 373
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	188, 197, 228, 287
TfiI	GAWTC	3 cut(s)	258, 271, 300
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	326, 355
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	326, 355
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	109, 115
XmiI	GTMKAC	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.