Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008067

Physical Location & Seq

Genomic Coordinates Forward (+)

11131310 .. 11132380

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTACACACAATCTTCTCTTCCACTCGCCGGTGGCGGAGTGCCGTCGTCGTCATTCTCGCCGGAGCCGGAACCAGGGAGCATAGAAGACGCTCTGCTCCAATTGGTCCAGGACCACCACCACAACTCCCTCAAGCTCCGGGAACGCACAGATAGGGTGAAGAAGGACGCGATCAAGAAGGCGGCGCGTGCGGCGGAGCTGATGGTGGAGGCGGTGAACGGCGGGGTGCAAGAGTCGTTCGTAAACGAGAAGCGAATCGAGCTTGAGATTCGGGCTTTGGCGGCCACCATTACCCGATTCACCAAGCAAACGGATCAGTGGCTCACCGTCACTCATTCTATGAACACTGCCATCAAGGAAATTGGGGATTTTGAGAATTGGATGAAGATCATGGAGTTTGATTGTAAGAGCATCACTGCAGCTATACACAATATTCACCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

6.06

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	35 - 147	2.5e-39	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30330 AT2G30330
fragaria_vesca	FvH4_3g40170 FvH4_3g40170 FvH4_3g40170
malus_domestica	MD03G1059100.v1.1 MD11G1061300.v1.1
prunus_persica	Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G044100_v2.0.a1 Prupe.6G095400_v2.0.a1
pyrus_communis	pycom03g04750 pycom11g05090
rosa_chinensis	RchiOBHm_Chr5g0072361
rosa_laevigata	RLG00000036294
rosa_multiflora	Rmu_co8455359.1_g000001 Rmu_sc0000737.1_g000015
rosa_roxburghii	Rroxscaffold_1G00008860
rosa_rugosa	Rorug05G0417500
rosa_samantha	Rh5AG474100 Rh5BG494200 Rh5CG518200 Rh5DG506300
rosa_wichuraiana	Rw5G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	170, 187
AciI	CCGC	7 cut(s)	36, 182, 191, 194, 212, 222, 281
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	29, 74
AjnI	CCWGG	2 cut(s)	73, 108
AluBI	AGCT	5 cut(s)	136, 199, 262, 422, 443
AluI	AGCT	5 cut(s)	136, 199, 262, 422, 443
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	106, 112
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	5 cut(s)	169, 226, 292, 316, 428
AvaII	GGWCC	2 cut(s)	106, 112
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	2 cut(s)	196, 359
BceAI	ACGGC	2 cut(s)	28, 235
BciT130I	CCWGG	2 cut(s)	75, 110
BcnI	CCSGG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	4 cut(s)	183, 192, 282, 420
BlsI	GCNGC	4 cut(s)	184, 193, 283, 421
Bme1390I	CCNGG	3 cut(s)	75, 110, 140
Bme18I	GGWCC	2 cut(s)	106, 112
BmgT120I	GGNCC	2 cut(s)	106, 112
BmiI	GGNNCC	2 cut(s)	66, 72
BmrFI	CCNGG	3 cut(s)	75, 110, 140
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	116, 284
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 74
Bse118I	RCCGGY	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	75, 110
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	2 cut(s)	29, 74
BseXI	GCAGC	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	170, 187
BshFI	GGCC	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	30, 62, 68, 139
BslI	CCNNNNNNNGG	2 cut(s)	29, 74
BsnI	GGCC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	171, 313, 387
BspACI	CCGC	7 cut(s)	36, 182, 191, 194, 212, 222, 281
BspANI	GGCC	1 cut(s)	284
BspFNI	CGCG	2 cut(s)	170, 187
BspLI	GGNNCC	2 cut(s)	66, 72
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	3
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	3 cut(s)	171, 313, 387
Bst2UI	CCWGG	2 cut(s)	75, 110
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	2 cut(s)	170, 187
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	174, 316, 390
BstMBI	GATC	3 cut(s)	171, 313, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 191, 259, 281
BstNI	CCWGG	2 cut(s)	75, 110
BstSCI	CCNGG	3 cut(s)	73, 108, 138
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	170, 187
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	345, 414
BtsIMutI	CAGTG	3 cut(s)	323, 345, 414
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	106, 112
CseI	GACGC	2 cut(s)	98, 176
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	391
CviJI	RGCY	9 cut(s)	67, 136, 199, 262, 275, 284, 322, 422, 443
CviKI_1	RGCY	9 cut(s)	67, 136, 199, 262, 275, 284, 322, 422, 443
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	173, 315, 389
DpnII	GATC	3 cut(s)	171, 313, 387
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	2 cut(s)	51, 209
Eco47I	GGWCC	2 cut(s)	106, 112
EcoRII	CCWGG	2 cut(s)	73, 108
FaeI	CATG	1 cut(s)	394
FaiI	YATR	4 cut(s)	83, 341, 392, 425
FatI	CATG	1 cut(s)	390
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	4 cut(s)	183, 192, 282, 420
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	183, 192, 282, 420
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	183, 192, 282, 420
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	4 cut(s)	30, 62, 68, 139
HgaI	GACGC	2 cut(s)	98, 176
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	233, 255, 268, 297
HpaII	CCGG	4 cut(s)	30, 62, 68, 139
HphI	GGTGA	5 cut(s)	169, 226, 292, 316, 428
Hpy166II	GTNNAC	3 cut(s)	6, 217, 244
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	3 cut(s)	6, 217, 244
Hpy99I	CGWCG	2 cut(s)	49, 52
HpyAV	CCTTC	2 cut(s)	157, 172
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	229, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 191, 259, 281
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	171, 313, 387
LmnI	GCTCC	5 cut(s)	64, 78, 102, 141, 196
LpnPI	CCDG	8 cut(s)	43, 60, 75, 81, 87, 95, 122, 152
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	173, 315, 389
MboI	GATC	3 cut(s)	171, 313, 387
MboII	GAAGA	5 cut(s)	6, 11, 98, 172, 397
MfeI	CAATTG	1 cut(s)	101
MluCI	AATT	3 cut(s)	101, 360, 376
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	140, 202
MspI	CCGG	4 cut(s)	30, 62, 68, 139
MspR9I	CCNGG	3 cut(s)	75, 110, 140
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	75, 110
MvnI	CGCG	2 cut(s)	170, 187
MwoI	GCNNNNNNNGC	4 cut(s)	188, 191, 259, 281
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	171, 313, 387
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	66, 72
NmuCI	GTSAC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	255, 268, 297
PfoI	TCCNGGA	2 cut(s)	108, 138
PkrI	GCNGC	4 cut(s)	184, 193, 283, 421
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	73, 108
PspGI	CCWGG	2 cut(s)	73, 108
PspN4I	GGNNCC	2 cut(s)	66, 72
PspPI	GGNCC	2 cut(s)	106, 112
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	4 cut(s)	183, 192, 282, 420
Sau3AI	GATC	3 cut(s)	171, 313, 387
Sau96I	GGNCC	2 cut(s)	106, 112
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	75, 110, 140
SetI	ASST	5 cut(s)	138, 201, 264, 424, 445
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	417
SgrAI	CRCCGGYG	1 cut(s)	29
SinI	GGWCC	2 cut(s)	106, 112
SmlI	CTYRAG	2 cut(s)	131, 263
SmoI	CTYRAG	2 cut(s)	131, 263
Sse9I	AATT	3 cut(s)	101, 360, 376
SsiI	CCGC	7 cut(s)	36, 182, 191, 194, 212, 222, 281
SspI	AATATT	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	73, 108, 138
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	101, 360, 376
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	185, 194, 284
TfiI	GAWTC	3 cut(s)	255, 268, 297
TscAI	CASTG	3 cut(s)	323, 352, 421
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	356, 398
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	323, 352, 421
VpaK11BI	GGWCC	2 cut(s)	106, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.