AT2G30575

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13020356 .. 13024218
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30575.1

Sequence Viewer

Length: 1833 bp
ATGAATCAAGTTCGTCGTTGGCAGAGGATTCTGATCCTCTCGCTGCTATTGTTATCTGTTTTAGCTCCGATTGTTTTCGTTTCGAATCGGCTCAAGAGCATCACTTCCGTCGATAGAGGAGAATTCATTGAAGAATTATCCGACATTACAGATAAGACCGAGGATGAACTTAGACTTACTGCTATTGAACAGGACGAAGAAGGCTTGAAGGAGCCTAAACGTATTCTGCAGGATCGAGATTTTAATTCTGTGGTTTTGTCAAATTCCTCTGATAAAAGTAATGATACTGTGCAGTCTAATGAGGGAGACCAAAAAAACTTTCTCTCAGAAGTTGATAAGGGAAATAATCACAAACCAAAGGAGGAACAAGCAGTTTCACAGAAAACCACAGTAAGCTCGAATGCGGAGGTGAAAATTTCAGCAAGAGATATTCAACTTAATCATAAAACGGAATTCCGACCCCCTTCAAGTAAGAGTGAAAAGAATACAAGGGTTCAACTTGAAAGAGCAACAGATGAGAGGGTAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAATTTGGCCCTACCTGGGAATAACTCCCAAATCGTAAAGGAGTTGAGAGTTCGAACGAAAGAGCTGGAACGGGCTACTGGTGATACTACCAAGGATAAATATTTGCCAAAGAGCTCTCCTAACAGATTGAAGGCCATGGAAGTTGCGTTATACAAGGTCAGCCGTGCCTTTCACAACTGCCCTGCCATTGCTACCAAACTCCAAGCCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAGAAGAAACAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCATTGTCTCTCAATGCGGTTGACAACAGAATATTTTACCCTGGATCACGAAAAAAGGCAGCTTTTGCAACAAAGTTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGACAATGTTTTGGCCTCTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGGATAAAATAGTATTCCATGTGGTGACAGATTCACTCAATTACCCAGCAATCTCAATGTGGTTTTTACTAAACCCAAGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGAAATGAATGTCCTGCCATTGTACCATGCTGAATTGCTGATGAAGCAAAATTCAAGTGACCCAAGAATCATTTCAGCGCTCAACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAACAAGATCGTACTCTTCGATCATGATGTAGTAGTGCAAAGGGATCTAACTAGACTGTGGAGCCTTGATATGACGGGGAAAGTTGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGATCCTTCATATCGTTCGATGGACTCATTCATTAATTTCTCAGATGCATGGGTTTCTCAGAAATTTGATCCCAAGGCTTGCACTTGGGCATTCGGGATGAATCTATTTGATCTCGAAGAATGGAGAAGACAGGAGTTGACTTCTGTATACCTGAAATACTTCGACCTGGGAGTAAAAGGACATCTGTGGAAAGCAGGGGGATTGCCAGTAGGTTGGTTGACTTTTTTCGGGCAAACGTTTCCGTTGGAAAAGAGATGGAACGTGGGTGGGTTAGGTCACGAATCAGGACTCAGGGCAAGCGACATCGAACAAGCAGCGGTTATACACTACGACGGGATCATGAAACCATGGCTGGACATCGGTATAGACAAGTACAAGCGCTACTGGAACATACATGTACCTTACCATCACCCTCACTTACAACGGTGCAACATTCACGATTGA

Protein Analysis

610

Amino Acids

69.88

Weight (kDa)

7.69

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 171 - 246 4.1e-23 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 291 - 583 1.5e-61 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 783, 945
AccI GTMKAC 1 cut(s) 1536
AciI CCGC 3 cut(s) 404, 883, 1706
AclI AACGTT 1 cut(s) 1625
AclWI GGATC 8 cut(s) 28, 240, 918, 944, 1326, 1385, 1451, 1733
AcsI RAATTY 7 cut(s) 122, 262, 414, 452, 568, 1201, 1451
AfaI GTAC 4 cut(s) 1175, 1287, 1763, 1788
AfeI AGCGCT 2 cut(s) 1230, 1769
AfiI CCNNNNNNNGG 2 cut(s) 582, 861
AflIII ACRYGT 1 cut(s) 1783
AjnI CCWGG 4 cut(s) 580, 906, 1267, 1554
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 1207, 1239
AluBI AGCT 9 cut(s) 65, 396, 631, 681, 800, 838, 928, 1127, 1367
AluI AGCT 9 cut(s) 65, 396, 631, 681, 800, 838, 928, 1127, 1367
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 4 cut(s) 300, 531, 878, 1367
AlwI GGATC 8 cut(s) 28, 240, 918, 944, 1326, 1385, 1451, 1733
Ama87I CYCGRG 1 cut(s) 801
Aor51HI AGCGCT 2 cut(s) 1230, 1769
AoxI GGCC 3 cut(s) 573, 699, 993
ApeKI GCWGC 6 cut(s) 43, 821, 835, 842, 925, 1703
ApoI RAATTY 7 cut(s) 122, 262, 414, 452, 568, 1201, 1451
AseI ATTAAT 1 cut(s) 1422
Asp700I GAANNNNTTC 2 cut(s) 1222, 1547
AspLEI GCGC 3 cut(s) 808, 1231, 1770
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 5 cut(s) 421, 659, 1075, 1400, 1790
AsuII TTCGAA 2 cut(s) 83, 619
AvaI CYCGRG 1 cut(s) 801
BanII GRGCYC 1 cut(s) 683
BbsI GAAGAC 2 cut(s) 967, 1522
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 6 cut(s) 30, 833, 847, 854, 937, 1715
BccI CCATC 3 cut(s) 1402, 1638, 1803
BceAI ACGGC 1 cut(s) 714
BciT130I CCWGG 4 cut(s) 582, 908, 1269, 1556
BcoDI GTCTC 4 cut(s) 300, 531, 878, 1367
BfaI CTAG 1 cut(s) 1326
BfmI CTRYAG 2 cut(s) 227, 1368
BfoI RGCGCY 2 cut(s) 1232, 1771
BisI GCNGC 6 cut(s) 44, 822, 836, 843, 926, 1704
BlsI GCNGC 6 cut(s) 45, 823, 837, 844, 927, 1705
Bme1390I CCNGG 4 cut(s) 582, 908, 1269, 1556
BmeT110I CYCGRG 1 cut(s) 801
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 213, 1038, 1337
BmrFI CCNGG 4 cut(s) 582, 908, 1269, 1556
BmsI GCATC 2 cut(s) 108, 1423
BpiI GAAGAC 2 cut(s) 967, 1522
Bpu14I TTCGAA 2 cut(s) 83, 619
BpuEI CTTGAG 1 cut(s) 77
BsaAI YACGTR 1 cut(s) 970
BsaBI GATNNNNATC 2 cut(s) 32, 954
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 9 cut(s) 159, 581, 657, 702, 906, 1267, 1461, 1555, 1736
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 582, 861
Bse1I ACTGG 3 cut(s) 649, 1595, 1778
Bse3DI GCAATG 1 cut(s) 753
Bse8I GATNNNNATC 2 cut(s) 32, 954
BseBI CCWGG 4 cut(s) 582, 908, 1269, 1556
BseDI CCNNGG 9 cut(s) 159, 581, 657, 702, 906, 1267, 1461, 1555, 1736
BseGI GGATG 2 cut(s) 169, 1491
BseJI GATNNNNATC 2 cut(s) 32, 954
BseLI CCNNNNNNNGG 2 cut(s) 582, 861
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 4 cut(s) 339, 1443, 1460, 1693
BseNI ACTGG 3 cut(s) 649, 1595, 1778
BseRI GAGGAG 2 cut(s) 132, 1015
BseXI GCAGC 6 cut(s) 30, 833, 847, 854, 937, 1715
BseYI CCCAGC 1 cut(s) 1084
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 3 cut(s) 575, 701, 995
BsiHKAI GWGCWC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 1 cut(s) 1040
BslI CCNNNNNNNGG 2 cut(s) 582, 861
BsmAI GTCTC 4 cut(s) 300, 531, 878, 1367
BsmI GAATGC 2 cut(s) 406, 1478
BsnI GGCC 3 cut(s) 575, 701, 995
Bso31I GGTCTC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 801
Bsp119I TTCGAA 2 cut(s) 83, 619
Bsp1286I GDGCHC 1 cut(s) 683
Bsp19I CCATGG 2 cut(s) 702, 1736
BspACI CCGC 3 cut(s) 404, 883, 1706
BspANI GGCC 3 cut(s) 575, 701, 995
BspCNI CTCAG 4 cut(s) 338, 1442, 1459, 1692
BspHI TCATGA 2 cut(s) 1297, 1728
BspLI GGNNCC 3 cut(s) 213, 1038, 1337
BspMAI CTGCAG 1 cut(s) 231
BspPI GGATC 8 cut(s) 28, 240, 918, 944, 1326, 1385, 1451, 1733
BspT104I TTCGAA 2 cut(s) 83, 619
BspTNI GGTCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 753
BsrI ACTGG 3 cut(s) 649, 1595, 1778
BssECI CCNNGG 9 cut(s) 159, 581, 657, 702, 906, 1267, 1461, 1555, 1736
BssNAI GTATAC 1 cut(s) 1537
BssT1I CCWWGG 4 cut(s) 657, 702, 1461, 1736
Bst1107I GTATAC 1 cut(s) 1537
Bst2UI CCWGG 4 cut(s) 582, 908, 1269, 1556
Bst4CI ACNGT 4 cut(s) 289, 391, 1332, 1815
Bst6I CTCTTC 2 cut(s) 1003, 1295
BstAPI GCANNNNNTGC 1 cut(s) 931
BstBAI YACGTR 1 cut(s) 970
BstBI TTCGAA 2 cut(s) 83, 619
BstC8I GCNNGC 4 cut(s) 840, 1243, 1468, 1687
BstDEI CTNAG 5 cut(s) 170, 325, 1429, 1446, 1679
BstDSI CCRYGG 2 cut(s) 702, 1736
BstF5I GGATG 2 cut(s) 169, 1491
BstH2I RGCGCY 2 cut(s) 1232, 1771
BstHHI GCGC 3 cut(s) 808, 1231, 1770
BstMAI GTCTC 4 cut(s) 300, 531, 878, 1367
BstMWI GCNNNNNNNGC 2 cut(s) 931, 1195
BstNI CCWGG 4 cut(s) 582, 908, 1269, 1556
BstNSI RCATGY 1 cut(s) 1787
BstSCI CCNGG 4 cut(s) 580, 906, 1267, 1554
BstSFI CTRYAG 2 cut(s) 227, 1368
BstSNI TACGTA 1 cut(s) 970
BstV1I GCAGC 6 cut(s) 30, 833, 847, 854, 937, 1715
BstV2I GAAGAC 2 cut(s) 967, 1522
BstX2I RGATCY 1 cut(s) 1318
BstXI CCANNNNNNTGG 1 cut(s) 1602
BstYI RGATCY 1 cut(s) 1318
BstZ17I GTATAC 1 cut(s) 1537
BsuRI GGCC 3 cut(s) 575, 701, 995
BtgI CCRYGG 2 cut(s) 702, 1736
BtsCI GGATG 2 cut(s) 169, 1491
Cac8I GCNNGC 4 cut(s) 840, 1243, 1468, 1687
CciI TCATGA 2 cut(s) 1297, 1728
CfoI GCGC 3 cut(s) 808, 1231, 1770
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 4 cut(s) 1174, 1286, 1762, 1787
CviQI GTAC 4 cut(s) 1174, 1286, 1762, 1787
DdeI CTNAG 5 cut(s) 170, 325, 1429, 1446, 1679
Eam1104I CTCTTC 2 cut(s) 1003, 1295
EarI CTCTTC 2 cut(s) 1003, 1295
Ecl136II GAGCTC 1 cut(s) 681
Eco105I TACGTA 1 cut(s) 970
Eco130I CCWWGG 4 cut(s) 657, 702, 1461, 1736
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 1261
Eco47III AGCGCT 2 cut(s) 1230, 1769
Eco53kI GAGCTC 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 681
EcoRI GAATTC 2 cut(s) 122, 452
EcoRII CCWGG 4 cut(s) 580, 906, 1267, 1554
EcoRV GATATC 1 cut(s) 1261
EcoT14I CCWWGG 4 cut(s) 657, 702, 1461, 1736
EcoT22I ATGCAT 1 cut(s) 1438
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 4 cut(s) 657, 702, 1461, 1736
FblI GTMKAC 1 cut(s) 1536
Fnu4HI GCNGC 6 cut(s) 44, 822, 836, 843, 926, 1704
FokI GGATG 2 cut(s) 176, 1498
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 6 cut(s) 44, 822, 836, 843, 926, 1704
FspBI CTAG 1 cut(s) 1326
GlaI GCGC 3 cut(s) 807, 1230, 1769
GluI GCNGC 6 cut(s) 44, 822, 836, 843, 926, 1704
GsaI CCCAGC 1 cut(s) 1088
HaeII RGCGCY 2 cut(s) 1232, 1771
HaeIII GGCC 3 cut(s) 575, 701, 995
HapII CCGG 1 cut(s) 1040
HhaI GCGC 3 cut(s) 808, 1231, 1770
Hin6I GCGC 3 cut(s) 806, 1229, 1768
HinP1I GCGC 3 cut(s) 806, 1229, 1768
HincII GTYRAC 4 cut(s) 888, 1012, 1527, 1608
HindII GTYRAC 4 cut(s) 888, 1012, 1527, 1608
HinfI GANTC 9 cut(s) 4, 28, 85, 1070, 1218, 1412, 1489, 1670, 1677
HpaI GTTAAC 1 cut(s) 1012
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 5 cut(s) 421, 659, 1075, 1400, 1790
Hpy166II GTNNAC 5 cut(s) 888, 1012, 1527, 1537, 1608
Hpy8I GTNNAC 5 cut(s) 888, 1012, 1527, 1537, 1608
Hpy99I CGWCG 3 cut(s) 18, 113, 1724
HpyAV CCTTC 6 cut(s) 194, 202, 474, 691, 1379, 1404
HpyCH4III ACNGT 4 cut(s) 289, 391, 1332, 1815
HpyCH4IV ACGT 4 cut(s) 220, 969, 1625, 1650
HpyF10VI GCNNNNNNNGC 2 cut(s) 931, 1195
HpyF3I CTNAG 5 cut(s) 170, 325, 1429, 1446, 1679
HpySE526I ACGT 4 cut(s) 220, 969, 1625, 1650
HspAI GCGC 3 cut(s) 806, 1229, 1768
KspAI GTTAAC 1 cut(s) 1012
LmnI GCTCC 4 cut(s) 70, 211, 1335, 1364
Lsp1109I GCAGC 6 cut(s) 30, 833, 847, 854, 937, 1715
LweI GCATC 2 cut(s) 108, 1423
MaeI CTAG 1 cut(s) 1326
MaeII ACGT 4 cut(s) 220, 969, 1625, 1650
MaeIII GTNAC 3 cut(s) 1063, 1208, 1664
MflI RGATCY 1 cut(s) 1318
MhlI GDGCHC 1 cut(s) 683
MlyI GAGTC 2 cut(s) 1406, 1671
MmeI TCCRAC 4 cut(s) 165, 481, 1342, 1614
Mph1103I ATGCAT 1 cut(s) 1438
MroXI GAANNNNTTC 2 cut(s) 1222, 1547
MseI TTAA 5 cut(s) 243, 438, 830, 1011, 1422
MspA1I CMGCKG 1 cut(s) 1706
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 4 cut(s) 582, 908, 1269, 1556
Mva1269I GAATGC 2 cut(s) 406, 1478
MvaI CCWGG 4 cut(s) 582, 908, 1269, 1556
MwoI GCNNNNNNNGC 2 cut(s) 931, 1195
NcoI CCATGG 2 cut(s) 702, 1736
NlaIV GGNNCC 3 cut(s) 213, 1038, 1337
NmuCI GTSAC 3 cut(s) 1063, 1208, 1664
NsiI ATGCAT 1 cut(s) 1438
NspI RCATGY 1 cut(s) 1787
NspV TTCGAA 2 cut(s) 83, 619
PagI TCATGA 2 cut(s) 1297, 1728
PciI ACATGT 1 cut(s) 1783
PcsI WCGNNNNNNNCGW 1 cut(s) 1290
PctI GAATGC 2 cut(s) 406, 1478
PdmI GAANNNNTTC 2 cut(s) 1222, 1547
PfeI GAWTC 7 cut(s) 4, 28, 85, 1070, 1218, 1489, 1670
PkrI GCNGC 6 cut(s) 45, 823, 837, 844, 927, 1705
PleI GAGTC 2 cut(s) 1406, 1671
PpsI GAGTC 2 cut(s) 1406, 1671
Ppu21I YACGTR 1 cut(s) 970
PscI ACATGT 1 cut(s) 1783
PshBI ATTAAT 1 cut(s) 1422
PsiI TTATAA 2 cut(s) 783, 945
Psp124BI GAGCTC 1 cut(s) 683
Psp1406I AACGTT 1 cut(s) 1625
Psp6I CCWGG 4 cut(s) 580, 906, 1267, 1554
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 4 cut(s) 580, 906, 1267, 1554
PspN4I GGNNCC 3 cut(s) 213, 1038, 1337
PspPI GGNCC 1 cut(s) 574
PstI CTGCAG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 1318
RsaI GTAC 4 cut(s) 1175, 1287, 1763, 1788
RsaNI GTAC 4 cut(s) 1174, 1286, 1762, 1787
SacI GAGCTC 1 cut(s) 683
SaqAI TTAA 5 cut(s) 243, 438, 830, 1011, 1422
SatI GCNGC 6 cut(s) 44, 822, 836, 843, 926, 1704
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 2 cut(s) 1406, 1671
ScrFI CCNGG 4 cut(s) 582, 908, 1269, 1556
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 2 cut(s) 108, 1423
SfcI CTRYAG 2 cut(s) 227, 1368
SfuI TTCGAA 2 cut(s) 83, 619
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 970
SsiI CCGC 3 cut(s) 404, 883, 1706
SspI AATATT 2 cut(s) 668, 899
SspMI CTAG 1 cut(s) 1326
SstI GAGCTC 1 cut(s) 683
StyD4I CCNGG 4 cut(s) 580, 906, 1267, 1554
StyI CCWWGG 4 cut(s) 657, 702, 1461, 1736
TaaI ACNGT 4 cut(s) 289, 391, 1332, 1815
TaiI ACGT 4 cut(s) 223, 972, 1628, 1653
TaqII GACCGA 1 cut(s) 173
TatI WGTACW 1 cut(s) 1761
TfiI GAWTC 7 cut(s) 4, 28, 85, 1070, 1218, 1489, 1670
Tru1I TTAA 5 cut(s) 243, 438, 830, 1011, 1422
Tru9I TTAA 5 cut(s) 243, 438, 830, 1011, 1422
TseFI GTSAC 3 cut(s) 1063, 1208, 1664
TseI GCWGC 6 cut(s) 43, 821, 835, 842, 925, 1703
Tsp45I GTSAC 3 cut(s) 1063, 1208, 1664
TspGWI ACGGA 3 cut(s) 97, 464, 1620
VspI ATTAAT 1 cut(s) 1422
XapI RAATTY 7 cut(s) 122, 262, 414, 452, 568, 1201, 1451
XceI RCATGY 1 cut(s) 1787
XmiI GTMKAC 1 cut(s) 1536
XmnI GAANNNNTTC 2 cut(s) 1222, 1547
XspI CTAG 1 cut(s) 1326
Zsp2I ATGCAT 1 cut(s) 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.