Rorug06G0203200

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
32548899 .. 32549231
333 bp
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UTR
Exon/CDS
Intron
Rorug06G0203200.1

Sequence Viewer

Length: 333 bp
ATGGGGAAGAGACGACAAAGGGAGGATGATAACATCACCATTTCTCCGAAAAAGCTCAAGTTGAGTTTAGCTGTTGGCAAAAGGAACCTGAACTTGGAACCGGAACAGCTCGGTTTGGTACCAGTGCAGCAAACTGATGAGCAACCTCTCCAGGTAAAGAAAAAAAGAGGGAGACCTGCAGGTAGTAGAAACAAACTACCCTATGGGGAAAAGAAGAAAGCAAAGCAGGGAGAAGAGAGTAGGGCAACAAAGAAAAGGCTCTTCCCCAAACTTGACAAGGCAGGTGCTGGAGCAGGCTCCAACCCGAAAGGGAAGGAGATAGCTATTTACTAA

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

10.38

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 3 cut(s) 170, 184, 272
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 94
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 4 cut(s) 55, 71, 109, 323
AluI AGCT 4 cut(s) 55, 71, 109, 323
Alw26I GTCTC 2 cut(s) 4, 166
AlwNI CAGNNNCTG 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 127
Asp718I GGTACC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 4, 166
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 3 cut(s) 170, 184, 272
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 4 cut(s) 86, 99, 120, 298
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 2 cut(s) 134, 309
BpuEI CTTGAG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 4, 166
BsmBI CGTCTC 1 cut(s) 4
Bso31I GGTCTC 1 cut(s) 166
BspLI GGNNCC 4 cut(s) 86, 99, 120, 298
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 3 cut(s) 170, 184, 272
BspQI GCTCTTC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 3 cut(s) 2, 228, 266
BstC8I GCNNGC 1 cut(s) 295
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 4, 166
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 3 cut(s) 170, 184, 272
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 287
Csp6I GTAC 1 cut(s) 119
CviJI RGCY 6 cut(s) 55, 71, 109, 259, 297, 323
CviKI_1 RGCY 6 cut(s) 55, 71, 109, 259, 297, 323
CviQI GTAC 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 2, 228, 266
EarI CTCTTC 3 cut(s) 2, 228, 266
Eco31I GGTCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 4
FaiI YATR 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
GsuI CTGGAG 2 cut(s) 134, 309
HapII CCGG 1 cut(s) 101
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 127, 179
KpnI GGTACC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 290, 302
Lsp1109I GCAGC 1 cut(s) 139
MboII GAAGA 4 cut(s) 19, 226, 245, 253
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 3 cut(s) 16, 156, 161
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NlaIV GGNNCC 4 cut(s) 86, 99, 120, 298
PaqCI CACCTGC 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 86, 99, 120, 298
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 1 cut(s) 128
SbfI CCTGCAGG 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 152
SdaI CCTGCAGG 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse8387I CCTGCAGG 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 150
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 127
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.