Rw6G027160

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
50862063 .. 50865880
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027160.1

Sequence Viewer

Length: 1839 bp
ATGAAGCCATTTCGTCGATGCCAGAGGATCCTCATCCTCTCTCTGCTTTCGCTCTCTGTTTTCGCTCCAATCCTCTTCGTCTCCCACAGGCTCAAGAATCTCACCTATACTGGGCGGAAGGAATTCATTGAAGATTTATCCAATGTTAAATACAGGGCTGATACTTTTAAGCTTAGTGCTGTTGAGCAGGAAGCCGGTGAAGGTTTGAAAGAGCCCAGGAAAGTTTTGTATGAAGATACGGATGTAGTTTCTTTGGTTAGTTACAGTCTTGGTGAGAATCAAGATGGTAAGGAATCTGGAAATGTTGGAGACATTACTGATACGGCGGAAAGAATGGAAAATGGAACCAATAATGAGAGCAAAGAAGGAGATATACAATTTCAGCAGAGAGAAATATCATCTGCATCCAGTGAAAAGAATGAACAATCTCAGTCAAGGAAAGTAATAGATCAGAGAATAAAAGAGATGAAAGATGTAAAATCAAATCATCCTGTTCAAAAAGTGAATTCAAATATCCGGAGAGTGGCAGACAAGATAAATGAGATGAAAGATCAGATGATTAGAGCTAAAGCATACATGACTTTTGCACCACCTAATTCACAGTTGGTGAAGGAGTTGAGACTGCGAACTAAAGAGGTGGAACGTGTGGTTGGTAGAACCCACAAGGATTCTGATTTATCTCGGAGTGCTTTGCAGAAAATGAGAAACTTGGAGGCCTCACTATCCAAAGCCAGCCGTGCCTTCCCAGACTGCTCTGCCATGGCCACAAAACTACGTTCTATGACTCACAGTGCTGAAGAGCAAGTTGGGTTGCAGAAGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGCACTACCCCGAAAGGTCTTCATTGTCTTTCTATGCAGCTGATTGCAGAGTACTTTGCTCTGGATTCCAAGGAGAGGCAATTTCCTAACCAACACAAGTTGCATGATCCACAGCTCTACCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTGAACTCCACTGTTTCCACTGCCAAGGAACCAGAGAAGATTGTTTTCCATGTGGTGACTGATTCACTCAATTTTCCAGCATTGTCAATGTGGTTCTTATTGAATCCTCCTGGAAAAGCCACTATCCAAGTCCAGAGCATTGAGAGTTTTGAATGGTTGTCTACCAAGTATAAAAGACCATTAATTCAGAAGTCCACTGACCCTAGATATGCTTCTGAACTCAACCACCTCCGTTTCTATCTGCCTGATATCTTCCCTTCACTGAATAAGATTGTGCTATTTGACCATGATGTCGTAGTTCAAAGGGATCTATCTAGACTGTGGAGTGTTAATATGAAGGGGAAAGTCAATGGTGCAGTTGAGACTTGCCGGGATAATGAACCATCATTTTTACAGATGGATACATTTATCAACTTCTCAGATCCATATGTGGCAAATAGGTTTGATGTCAATGCATGCACATGGGCATTTGGCATGAATTTGTTCGATCTTCAAAATTGGAGGAGGCATAAGCTAACTACTCTATACCATAAATACATGCAATTGGGTTCTAAGAAGCCATTGTGGGTGGCTGGGAGCTTGCCTTTAGGTTGGGTCACCTTCTATAACCGGACAGTGGCTTTGGACAGGCGATGGCATGCTCTTGGGCTGGGTTATGACTCTGGTGTGGTTCAGGGCGATGTGGACCGAGCAGCAGTGATACATTATGATGGAATTATGAAGCCTTGGTTAGATATTGCGATTGGGAGGTACAAGGGGTATTGGAGCAAATATCTCAACTATGATCACTCTCATCTGCAGCGGTGCAACATTCATGCGTAG

Protein Analysis

612

Amino Acids

70.21

Weight (kDa)

9.18

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 178 - 248 2.2e-22 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 293 - 586 5.3e-61 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1307
AccI GTMKAC 1 cut(s) 1178
AccIII TCCGGA 1 cut(s) 516
AciI CCGC 3 cut(s) 115, 326, 1819
AclWI GGATC 5 cut(s) 22, 35, 953, 1332, 1433
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 122, 505, 1495
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 2 cut(s) 905, 1769
AfiI CCNNNNNNNGG 4 cut(s) 111, 523, 927, 1633
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 8 cut(s) 131, 208, 497, 510, 1120, 1169, 1319, 1511
AjnI CCWGG 2 cut(s) 215, 1126
AjuI GAANNNNNNNTTGG 4 cut(s) 633, 665, 789, 821
AluBI AGCT 6 cut(s) 172, 566, 892, 967, 1531, 1596
AluI AGCT 6 cut(s) 172, 566, 892, 967, 1531, 1596
Alw26I GTCTC 4 cut(s) 85, 303, 613, 1373
AlwI GGATC 5 cut(s) 22, 35, 953, 1332, 1433
Aor13HI TCCGGA 1 cut(s) 516
AoxI GGCC 2 cut(s) 714, 762
ApeKI GCWGC 3 cut(s) 889, 1709, 1816
ApoI RAATTY 3 cut(s) 122, 505, 1495
ArsI GACNNNNNNTTYG 2 cut(s) 1621, 1653
AseI ATTAAT 1 cut(s) 1199
Asp700I GAANNNNTTC 2 cut(s) 122, 1499
AspS9I GGNCC 1 cut(s) 1702
AsuC2I CCSGG 1 cut(s) 1388
AsuHPI GGTGA 7 cut(s) 94, 209, 284, 619, 833, 1084, 1606
AvaII GGWCC 1 cut(s) 1702
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbsI GAAGAC 2 cut(s) 863, 976
BbvI GCAGC 3 cut(s) 901, 1721, 1828
BccI CCATC 5 cut(s) 278, 1408, 1408, 1644, 1721
BceAI ACGGC 2 cut(s) 339, 720
BciT130I CCWGG 2 cut(s) 217, 1128
BciVI GTATCC 1 cut(s) 1411
BclI TGATCA 1 cut(s) 1801
BcnI CCSGG 1 cut(s) 1388
BcoDI GTCTC 4 cut(s) 85, 303, 613, 1373
BfaI CTAG 2 cut(s) 1221, 1332
BfmI CTRYAG 1 cut(s) 1814
BfuI GTATCC 1 cut(s) 1411
BisI GCNGC 3 cut(s) 890, 1710, 1817
BlsI GCNGC 3 cut(s) 891, 1711, 1818
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 3 cut(s) 217, 1128, 1388
Bme18I GGWCC 1 cut(s) 1702
BmgT120I GGNCC 1 cut(s) 1702
BmiI GGNNCC 3 cut(s) 29, 346, 1047
BmrFI CCNGG 3 cut(s) 217, 1128, 1388
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 8, 413
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 2 cut(s) 863, 976
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 1388
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 5 cut(s) 215, 759, 921, 1041, 1742
BsaWI WCCGGW 2 cut(s) 516, 1626
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 523, 927, 1633
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 115, 408
Bse8I GATNNNNATC 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 516
BseBI CCWGG 2 cut(s) 217, 1128
BseDI CCNNGG 5 cut(s) 215, 759, 921, 1041, 1742
BseGI GGATG 4 cut(s) 33, 247, 404, 487
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 4 cut(s) 111, 523, 927, 1633
BseMII CTCAG 2 cut(s) 443, 1449
BseNI ACTGG 2 cut(s) 115, 408
BseRI GAGGAG 1 cut(s) 1534
BseXI GCAGC 3 cut(s) 901, 1721, 1828
BseYI CCCAGC 2 cut(s) 1589, 1666
BsgI GTGCAG 2 cut(s) 1029, 1392
BshFI GGCC 2 cut(s) 716, 764
BsiSI CCGG 4 cut(s) 195, 517, 1387, 1627
BslI CCNNNNNNNGG 4 cut(s) 111, 523, 927, 1633
BsmAI GTCTC 4 cut(s) 85, 303, 613, 1373
BsmBI CGTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 716, 764
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 516
Bsp143I GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 3 cut(s) 115, 326, 1819
BspANI GGCC 2 cut(s) 716, 764
BspCNI CTCAG 2 cut(s) 442, 1448
BspEI TCCGGA 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 29, 346, 1047
BspMAI CTGCAG 1 cut(s) 1818
BspPI GGATC 5 cut(s) 22, 35, 953, 1332, 1433
BspQI GCTCTTC 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 2 cut(s) 115, 408
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 5 cut(s) 215, 759, 921, 1041, 1742
BssMI GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
BssT1I CCWWGG 4 cut(s) 759, 921, 1041, 1742
Bst2UI CCWGG 2 cut(s) 217, 1128
Bst4CI ACNGT 6 cut(s) 266, 603, 791, 1030, 1338, 1633
Bst6I CTCTTC 2 cut(s) 80, 792
BstC8I GCNNGC 4 cut(s) 733, 1474, 1598, 1656
BstDEI CTNAG 4 cut(s) 173, 429, 1435, 1569
BstDSI CCRYGG 1 cut(s) 759
BstEII GGTNACC 1 cut(s) 1612
BstF5I GGATG 4 cut(s) 33, 247, 404, 487
BstKTI GATC 8 cut(s) 30, 451, 553, 961, 1327, 1441, 1507, 1804
BstMAI GTCTC 4 cut(s) 85, 303, 613, 1373
BstMBI GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
BstMWI GCNNNNNNNGC 2 cut(s) 737, 820
BstNI CCWGG 2 cut(s) 217, 1128
BstNSI RCATGY 4 cut(s) 1008, 1476, 1558, 1658
BstPI GGTNACC 1 cut(s) 1612
BstSCI CCNGG 3 cut(s) 215, 1126, 1386
BstSFI CTRYAG 1 cut(s) 1814
BstV1I GCAGC 3 cut(s) 901, 1721, 1828
BstV2I GAAGAC 2 cut(s) 863, 976
BstX2I RGATCY 3 cut(s) 27, 1324, 1438
BstYI RGATCY 3 cut(s) 27, 1324, 1438
BsuI GTATCC 1 cut(s) 1411
BsuRI GGCC 2 cut(s) 716, 764
BtgI CCRYGG 1 cut(s) 759
BtgZI GCGATG 2 cut(s) 1663, 1710
BtsCI GGATG 4 cut(s) 33, 247, 404, 487
BtsI GCAGTG 3 cut(s) 1017, 1035, 1719
BtsIMutI CAGTG 9 cut(s) 415, 796, 1017, 1026, 1035, 1212, 1277, 1638, 1719
Cac8I GCNNGC 4 cut(s) 733, 1474, 1598, 1656
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 1702
Csp6I GTAC 2 cut(s) 904, 1768
CviQI GTAC 2 cut(s) 904, 1768
DdeI CTNAG 4 cut(s) 173, 429, 1435, 1569
DpnI GATC 8 cut(s) 29, 450, 552, 960, 1326, 1440, 1506, 1803
DpnII GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
DrdI GACNNNNNNGTC 1 cut(s) 1307
DseDI GACNNNNNNGTC 1 cut(s) 1307
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 80, 792
EarI CTCTTC 2 cut(s) 80, 792
EciI GGCGGA 2 cut(s) 130, 341
Eco130I CCWWGG 4 cut(s) 759, 921, 1041, 1742
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 1267
Eco47I GGWCC 1 cut(s) 1702
Eco57I CTGAAG 1 cut(s) 816
Eco91I GGTNACC 1 cut(s) 1612
EcoO65I GGTNACC 1 cut(s) 1612
EcoRI GAATTC 2 cut(s) 122, 505
EcoRII CCWGG 2 cut(s) 215, 1126
EcoRV GATATC 1 cut(s) 1267
EcoT14I CCWWGG 4 cut(s) 759, 921, 1041, 1742
EcoT22I ATGCAT 1 cut(s) 1474
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 4 cut(s) 759, 921, 1041, 1742
Esp3I CGTCTC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 1444
FbaI TGATCA 1 cut(s) 1801
FblI GTMKAC 1 cut(s) 1178
Fnu4HI GCNGC 3 cut(s) 890, 1710, 1817
FokI GGATG 4 cut(s) 20, 254, 391, 474
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 890, 1710, 1817
FspBI CTAG 2 cut(s) 1221, 1332
GluI GCNGC 3 cut(s) 890, 1710, 1817
GsaI CCCAGC 2 cut(s) 1593, 1670
HaeIII GGCC 2 cut(s) 716, 764
HapII CCGG 4 cut(s) 195, 517, 1387, 1627
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 9 cut(s) 97, 277, 293, 668, 784, 917, 1079, 1120, 1676
HpaII CCGG 4 cut(s) 195, 517, 1387, 1627
HphI GGTGA 7 cut(s) 94, 209, 284, 619, 833, 1084, 1606
Hpy166II GTNNAC 4 cut(s) 1021, 1179, 1212, 1702
Hpy188I TCNGA 8 cut(s) 453, 555, 673, 684, 991, 1206, 1234, 1438
Hpy188III TCNNGA 7 cut(s) 94, 281, 297, 517, 914, 1150, 1332
Hpy8I GTNNAC 4 cut(s) 1021, 1179, 1212, 1702
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 8 cut(s) 112, 194, 359, 604, 751, 1284, 1348, 1627
HpyCH4III ACNGT 6 cut(s) 266, 603, 791, 1030, 1338, 1633
HpyCH4IV ACGT 2 cut(s) 643, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 820
HpyF3I CTNAG 4 cut(s) 173, 429, 1435, 1569
HpySE526I ACGT 2 cut(s) 643, 775
Kpn2I TCCGGA 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 1801
Kzo9I GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 3 cut(s) 70, 1593, 1782
Lsp1109I GCAGC 3 cut(s) 901, 1721, 1828
LweI GCATC 2 cut(s) 8, 413
MaeI CTAG 2 cut(s) 1221, 1332
MaeII ACGT 2 cut(s) 643, 775
MaeIII GTNAC 4 cut(s) 260, 826, 1072, 1612
MalI GATC 8 cut(s) 29, 450, 552, 960, 1326, 1440, 1506, 1803
MboI GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
MfeI CAATTG 1 cut(s) 1559
MflI RGATCY 3 cut(s) 27, 1324, 1438
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 764
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 2 cut(s) 778, 1670
MmeI TCCRAC 2 cut(s) 286, 1014
Mox20I TGGCCA 1 cut(s) 764
Mph1103I ATGCAT 1 cut(s) 1474
MroI TCCGGA 1 cut(s) 516
MroXI GAANNNNTTC 2 cut(s) 122, 1499
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 147, 168, 1199, 1347
MslI CAYNNNNRTG 2 cut(s) 1477, 1725
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 2 cut(s) 892, 1819
MspI CCGG 4 cut(s) 195, 517, 1387, 1627
MspR9I CCNGG 3 cut(s) 217, 1128, 1388
MunI CAATTG 1 cut(s) 1559
MvaI CCWGG 2 cut(s) 217, 1128
MwoI GCNNNNNNNGC 2 cut(s) 737, 820
NciI CCSGG 1 cut(s) 1388
NcoI CCATGG 1 cut(s) 759
NdeI CATATG 1 cut(s) 1444
NdeII GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
NlaIV GGNNCC 3 cut(s) 29, 346, 1047
NmuCI GTSAC 3 cut(s) 826, 1072, 1612
NsiI ATGCAT 1 cut(s) 1474
NspI RCATGY 4 cut(s) 1008, 1476, 1558, 1658
PaeI GCATGC 2 cut(s) 1476, 1658
PceI AGGCCT 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 792
PdmI GAANNNNTTC 2 cut(s) 122, 1499
PfeI GAWTC 7 cut(s) 97, 277, 293, 668, 917, 1079, 1120
PfoI TCCNGGA 1 cut(s) 1126
PkrI GCNGC 3 cut(s) 891, 1711, 1818
PleI GAGTC 2 cut(s) 778, 1670
PpsI GAGTC 2 cut(s) 778, 1670
PshBI ATTAAT 1 cut(s) 1199
Psp6I CCWGG 2 cut(s) 215, 1126
PspEI GGTNACC 1 cut(s) 1612
PspFI CCCAGC 2 cut(s) 1589, 1666
PspGI CCWGG 2 cut(s) 215, 1126
PspN4I GGNNCC 3 cut(s) 29, 346, 1047
PspPI GGNCC 1 cut(s) 1702
PstI CTGCAG 1 cut(s) 1818
PsuI RGATCY 3 cut(s) 27, 1324, 1438
PvuII CAGCTG 1 cut(s) 892
RsaI GTAC 2 cut(s) 905, 1769
RsaNI GTAC 2 cut(s) 904, 1768
RseI CAYNNNNRTG 2 cut(s) 1477, 1725
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 4 cut(s) 147, 168, 1199, 1347
SatI GCNGC 3 cut(s) 890, 1710, 1817
Sau3AI GATC 8 cut(s) 27, 448, 550, 958, 1324, 1438, 1504, 1801
Sau96I GGNCC 1 cut(s) 1702
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 2 cut(s) 778, 1670
ScrFI CCNGG 3 cut(s) 217, 1128, 1388
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 8, 413
SfcI CTRYAG 1 cut(s) 1814
SinI GGWCC 1 cut(s) 1702
SmiMI CAYNNNNRTG 2 cut(s) 1477, 1725
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SphI GCATGC 2 cut(s) 1476, 1658
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 3 cut(s) 115, 326, 1819
SspMI CTAG 2 cut(s) 1221, 1332
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 3 cut(s) 215, 1126, 1386
StyI CCWWGG 4 cut(s) 759, 921, 1041, 1742
TaaI ACNGT 6 cut(s) 266, 603, 791, 1030, 1338, 1633
TaiI ACGT 2 cut(s) 646, 778
TaqI TCGA 2 cut(s) 16, 1503
TaqII GACCGA 1 cut(s) 1719
TatI WGTACW 1 cut(s) 903
TfiI GAWTC 7 cut(s) 97, 277, 293, 668, 917, 1079, 1120
Tru1I TTAA 4 cut(s) 147, 168, 1199, 1347
Tru9I TTAA 4 cut(s) 147, 168, 1199, 1347
TscAI CASTG 9 cut(s) 415, 796, 1017, 1033, 1042, 1219, 1284, 1638, 1719
TseFI GTSAC 3 cut(s) 826, 1072, 1612
TseI GCWGC 3 cut(s) 889, 1709, 1816
Tsp45I GTSAC 3 cut(s) 826, 1072, 1612
TspGWI ACGGA 2 cut(s) 254, 1238
TspRI CASTG 9 cut(s) 415, 796, 1017, 1033, 1042, 1219, 1284, 1638, 1719
VpaK11BI GGWCC 1 cut(s) 1702
VspI ATTAAT 1 cut(s) 1199
XapI RAATTY 3 cut(s) 122, 505, 1495
XbaI TCTAGA 1 cut(s) 1331
XceI RCATGY 4 cut(s) 1008, 1476, 1558, 1658
XmiI GTMKAC 1 cut(s) 1178
XmnI GAANNNNTTC 2 cut(s) 122, 1499
XspI CTAG 2 cut(s) 1221, 1332
ZrmI AGTACT 1 cut(s) 905
Zsp2I ATGCAT 1 cut(s) 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.