Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008494

Physical Location & Seq

Genomic Coordinates Forward (+)

55249290 .. 55253724

Gene Structure 4435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGAATTGTGAATGTATTGAACTGGATCATGATTTAGCATGCAAGATTTGGCAGTCAGACATTTTTTTTCTGAACTTAATAACATCTTTTATCTTAAATAGTAATGTTTATGGTTCTGGTGACGGGCAAATTAACCAAGCATTGGTCCAACATGAACAGAATGAACAATCTCAATCAAGGAAAGTAATAGATCAGAGAATAAAAGAGATGAAAGATGTAAAATCAAATCATCCCGTTCAAAAAGTGAATTCAAATATCCGGAGAGTAGCAGACAAGATAAATGAGATGAAAGATCAGATGATTAGAGCTAGAGCATACATGACTTTTGCACCACCTAATTCACAGTTGGTGAAGGAGTTGAGACTGCGAACTAAAGAGGTGGAACGTGTGGTTGGTAGAACCCACAAGGATTCTGATTTATCTCGGAGTGCTTTGCAGAAAATGAGAAACTTGGAGGCCTCACTATCCAAAGCCAGCCGTGCTTTCCCAGACTGCTCTGCAATGGCCACAAAACTACGTTCTATGACTCACAGTGCTGAAGAGCAAGTTGGGTTGCAGAAGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGCACTACCCCGAAAGGTCTTCATTGTCTTTCTATGCAGCTGACTGCAGAGTACTTTGCTCTGGATTCCGAGGAGAGGCAATTTCCTAACCAACACAAGTTGCATGATCCACAGCTCTACCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTAAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAGATTGTTTTCCATGTGGTGACTGATTCACTCAATTTTCCAGCATTGTCAATGTGGTTCTTATTGAATCCTCCTGGAAAAGCCACTATCCAAGTCCAGAGCATAGAGAGTTTTGAATGGTTGTCGACCAAGTATAAAAGACCATTAATTCAGAAGTCCACTGACCCTAGATATGCTTCTGAACTCAACCACCTCCGTTTCTATCTGCCTGATATCTTCCCTGCACTGAATAAGATCGTGCTATTTGACCATGATGTCGTTGTTCAAAGGGATCTATCTAGACTGTGGAGTGTTAATATGAAGGGGAAAGTCAATGGTGCAGTTGAGACTTGCCGGGATAATGAACCATCATTTTTACAGATGGATACATTTATCAACTTCTCAGATCCATATGTAGCAAATAGGTTTGATGTCAATGCATGCACATGGGCATTTGGCATGAATTTGTTCGATCTTCAAAATTGGAGGAGGCATAAGCTAACTACTCTATACCATAAATACATGCAATTGGGTTCTAAGAAGCCATTGTGGGTGGCTGGGAGTTTGCCTTTAGGTTGGGTCACCTTCTATAACCGGACAGTGGCTTTGGACAGGCGATGGCATGCTCTCGGGCTGGGTTATGACTCTGGTGTGGTTCAGGGGGATGTGGACCGAGCAGCAGTGATACATTATGATGGAATTATGAAGCCGTGGTTAGATATTGCGATTGGGAGGTACAAGGGGTATTGGAGCAAATATCTCAACTATGATCACTCTCATCTGCAACGGTGCAACATTCATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

526

Amino Acids

60.56

Weight (kDa)

8.92

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	92 - 162	1.6e-22	Galacturonosyltransferase domain 1
Glyco_transf_8	PF01501	207 - 500	9e-61	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06780 AT1G06780 AT2G30575
fragaria_vesca	FvH4_2g22460 FvH4_2g22460
malus_domestica	MD05G1204900.v1.1 MD10G1192000.v1.1
prunus_persica	Prupe.8G231500_v2.0.a1 Prupe.8G231500_v2.0.a1
pyrus_communis	pycom05g19110 pycom10g16590
rosa_chinensis	RchiOBHm_Chr6g0289401
rosa_laevigata	RLG00000012307
rosa_multiflora	Rmu_co8414935.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179240
rosa_rugosa	Rorug06G0203100 Rorug06G0203200 Rorug06G0203300
rosa_samantha	Rh6AG314200 Rh6BG321800 Rh6CG328000 Rh6DG313700
rosa_wichuraiana	Rw6G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1049
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	920
AccIII	TCCGGA	1 cut(s)	258
AclWI	GGATC	4 cut(s)	33, 695, 1074, 1175
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	247, 1237
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	2 cut(s)	647, 1511
AfiI	CCNNNNNNNGG	3 cut(s)	142, 669, 1375
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	7 cut(s)	20, 239, 252, 862, 911, 1061, 1253
AjnI	CCWGG	1 cut(s)	868
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 531, 563
AluBI	AGCT	4 cut(s)	308, 634, 709, 1273
AluI	AGCT	4 cut(s)	308, 634, 709, 1273
Alw26I	GTCTC	2 cut(s)	355, 1115
AlwI	GGATC	4 cut(s)	33, 695, 1074, 1175
Ama87I	CYCGRG	1 cut(s)	1403
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	2 cut(s)	456, 504
ApeKI	GCWGC	2 cut(s)	631, 1451
ApoI	RAATTY	2 cut(s)	247, 1237
ArsI	GACNNNNNNTTYG	2 cut(s)	1363, 1395
AseI	ATTAAT	1 cut(s)	941
Asp700I	GAANNNNTTC	1 cut(s)	1241
AspS9I	GGNCC	2 cut(s)	145, 1444
AsuC2I	CCSGG	1 cut(s)	1130
AsuHPI	GGTGA	5 cut(s)	131, 361, 575, 826, 1348
AvaI	CYCGRG	1 cut(s)	1403
AvaII	GGWCC	2 cut(s)	145, 1444
BalI	TGGCCA	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	605, 718
BbvI	GCAGC	2 cut(s)	643, 1463
BccI	CCATC	4 cut(s)	1150, 1150, 1386, 1463
BceAI	ACGGC	2 cut(s)	462, 1468
BciT130I	CCWGG	1 cut(s)	870
BciVI	GTATCC	1 cut(s)	1153
BclI	TGATCA	1 cut(s)	1543
BcnI	CCSGG	1 cut(s)	1130
BcoDI	GTCTC	2 cut(s)	355, 1115
BfaI	CTAG	3 cut(s)	309, 963, 1074
BfmI	CTRYAG	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	1153
BisI	GCNGC	2 cut(s)	632, 1452
BlsI	GCNGC	2 cut(s)	633, 1453
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	870, 1130
Bme18I	GGWCC	2 cut(s)	145, 1444
BmeT110I	CYCGRG	1 cut(s)	1403
BmgT120I	GGNCC	2 cut(s)	145, 1444
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	2 cut(s)	870, 1130
BpiI	GAAGAC	2 cut(s)	605, 718
BpuMI	CCSGG	1 cut(s)	1130
BsaJI	CCNNGG	3 cut(s)	663, 783, 1484
BsaWI	WCCGGW	2 cut(s)	258, 1368
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 669, 1375
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	3 cut(s)	663, 783, 1484
BseGI	GGATG	2 cut(s)	229, 1444
BseLI	CCNNNNNNNGG	3 cut(s)	142, 669, 1375
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	1191
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	2 cut(s)	680, 1276
BseXI	GCAGC	2 cut(s)	643, 1463
BseYI	CCCAGC	2 cut(s)	1331, 1408
BsgI	GTGCAG	3 cut(s)	771, 1002, 1134
BshFI	GGCC	2 cut(s)	458, 506
BsiHKCI	CYCGRG	1 cut(s)	1403
BsiSI	CCGG	3 cut(s)	259, 1129, 1369
BslI	CCNNNNNNNGG	3 cut(s)	142, 669, 1375
BsmAI	GTCTC	2 cut(s)	355, 1115
BsnI	GGCC	2 cut(s)	458, 506
BsoBI	CYCGRG	1 cut(s)	1403
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
Bsp19I	CCATGG	1 cut(s)	783
BspANI	GGCC	2 cut(s)	458, 506
BspCNI	CTCAG	1 cut(s)	1190
BspEI	TCCGGA	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	4 cut(s)	33, 695, 1074, 1175
BspQI	GCTCTTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	663, 783, 1484
BssMI	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	6 cut(s)	345, 533, 772, 1080, 1375, 1563
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	40, 475, 1216, 1398
BstDEI	CTNAG	2 cut(s)	1177, 1311
BstDSI	CCRYGG	2 cut(s)	783, 1484
BstEII	GGTNACC	1 cut(s)	1354
BstF5I	GGATG	2 cut(s)	229, 1444
BstKTI	GATC	9 cut(s)	28, 193, 295, 703, 1032, 1069, 1183, 1249, 1546
BstMAI	GTCTC	2 cut(s)	355, 1115
BstMBI	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 562
BstNI	CCWGG	1 cut(s)	870
BstNSI	RCATGY	5 cut(s)	42, 750, 1218, 1300, 1400
BstPI	GGTNACC	1 cut(s)	1354
BstSCI	CCNGG	2 cut(s)	868, 1128
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	643, 1463
BstV2I	GAAGAC	2 cut(s)	605, 718
BstX2I	RGATCY	2 cut(s)	1066, 1180
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	2 cut(s)	1066, 1180
BsuI	GTATCC	1 cut(s)	1153
BsuRI	GGCC	2 cut(s)	458, 506
BtgI	CCRYGG	2 cut(s)	783, 1484
BtgZI	GCGATG	1 cut(s)	1405
BtsCI	GGATG	2 cut(s)	229, 1444
BtsI	GCAGTG	3 cut(s)	759, 777, 1461
BtsIMutI	CAGTG	8 cut(s)	538, 759, 768, 777, 954, 1019, 1380, 1461
Cac8I	GCNNGC	4 cut(s)	40, 475, 1216, 1398
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	145, 1444
Csp6I	GTAC	2 cut(s)	646, 1510
CviQI	GTAC	2 cut(s)	646, 1510
DdeI	CTNAG	2 cut(s)	1177, 1311
DpnI	GATC	9 cut(s)	27, 192, 294, 702, 1031, 1068, 1182, 1248, 1545
DpnII	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
DrdI	GACNNNNNNGTC	1 cut(s)	1049
DseDI	GACNNNNNNGTC	1 cut(s)	1049
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	2 cut(s)	145, 1444
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	1403
Eco91I	GGTNACC	1 cut(s)	1354
EcoO65I	GGTNACC	1 cut(s)	1354
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	868
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	1216
ErhI	CCWWGG	1 cut(s)	783
FauNDI	CATATG	1 cut(s)	1186
FbaI	TGATCA	1 cut(s)	1543
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	2 cut(s)	632, 1452
FokI	GGATG	2 cut(s)	216, 1451
Fsp4HI	GCNGC	2 cut(s)	632, 1452
FspBI	CTAG	3 cut(s)	309, 963, 1074
GluI	GCNGC	2 cut(s)	632, 1452
GsaI	CCCAGC	2 cut(s)	1335, 1412
HaeIII	GGCC	2 cut(s)	458, 506
HapII	CCGG	3 cut(s)	259, 1129, 1369
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	6 cut(s)	410, 526, 659, 821, 862, 1418
HpaII	CCGG	3 cut(s)	259, 1129, 1369
HphI	GGTGA	5 cut(s)	131, 361, 575, 826, 1348
Hpy166II	GTNNAC	4 cut(s)	763, 921, 954, 1444
Hpy188III	TCNNGA	5 cut(s)	29, 259, 656, 892, 1074
Hpy8I	GTNNAC	4 cut(s)	763, 921, 954, 1444
HpyAV	CCTTC	3 cut(s)	346, 1090, 1369
HpyCH4III	ACNGT	6 cut(s)	345, 533, 772, 1080, 1375, 1563
HpyCH4IV	ACGT	2 cut(s)	385, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 562
HpyF3I	CTNAG	2 cut(s)	1177, 1311
HpySE526I	ACGT	2 cut(s)	385, 517
Kpn2I	TCCGGA	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	1543
Kzo9I	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	1524
Lsp1109I	GCAGC	2 cut(s)	643, 1463
MaeI	CTAG	3 cut(s)	309, 963, 1074
MaeII	ACGT	2 cut(s)	385, 517
MaeIII	GTNAC	4 cut(s)	119, 568, 814, 1354
MalI	GATC	9 cut(s)	27, 192, 294, 702, 1031, 1068, 1182, 1248, 1545
MboI	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
MboII	GAAGA	7 cut(s)	551, 571, 605, 718, 808, 1003, 1241
MfeI	CAATTG	1 cut(s)	1301
MflI	RGATCY	2 cut(s)	1066, 1180
MlsI	TGGCCA	1 cut(s)	506
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	520, 1412
MmeI	TCCRAC	2 cut(s)	172, 756
Mox20I	TGGCCA	1 cut(s)	506
Mph1103I	ATGCAT	1 cut(s)	1216
MroI	TCCGGA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	1241
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	5 cut(s)	77, 95, 132, 941, 1089
MslI	CAYNNNNRTG	3 cut(s)	782, 1219, 1467
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	3 cut(s)	259, 1129, 1369
MspR9I	CCNGG	2 cut(s)	870, 1130
MunI	CAATTG	1 cut(s)	1301
MvaI	CCWGG	1 cut(s)	870
MwoI	GCNNNNNNNGC	2 cut(s)	479, 562
NciI	CCSGG	1 cut(s)	1130
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	1 cut(s)	1186
NdeII	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
NlaIV	GGNNCC	1 cut(s)	789
NmuCI	GTSAC	4 cut(s)	119, 568, 814, 1354
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	5 cut(s)	42, 750, 1218, 1300, 1400
PaeI	GCATGC	3 cut(s)	42, 1218, 1400
PagI	TCATGA	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	1241
PfeI	GAWTC	4 cut(s)	410, 659, 821, 862
PflMI	CCANNNNNTGG	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	868
PkrI	GCNGC	2 cut(s)	633, 1453
PleI	GAGTC	2 cut(s)	520, 1412
PpsI	GAGTC	2 cut(s)	520, 1412
PshBI	ATTAAT	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	868
PspEI	GGTNACC	1 cut(s)	1354
PspFI	CCCAGC	2 cut(s)	1331, 1408
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	2 cut(s)	145, 1444
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	1066, 1180
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	647, 1511
RsaNI	GTAC	2 cut(s)	646, 1510
RseI	CAYNNNNRTG	3 cut(s)	782, 1219, 1467
SalI	GTCGAC	1 cut(s)	919
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	77, 95, 132, 941, 1089
SatI	GCNGC	2 cut(s)	632, 1452
Sau3AI	GATC	9 cut(s)	25, 190, 292, 700, 1029, 1066, 1180, 1246, 1543
Sau96I	GGNCC	2 cut(s)	145, 1444
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	2 cut(s)	520, 1412
ScrFI	CCNGG	2 cut(s)	870, 1130
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	2 cut(s)	145, 1444
SmiMI	CAYNNNNRTG	3 cut(s)	782, 1219, 1467
SphI	GCATGC	3 cut(s)	42, 1218, 1400
SseBI	AGGCCT	1 cut(s)	458
SspMI	CTAG	3 cut(s)	309, 963, 1074
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	868, 1128
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	6 cut(s)	345, 533, 772, 1080, 1375, 1563
TaiI	ACGT	2 cut(s)	388, 520
TaqI	TCGA	2 cut(s)	920, 1245
TaqII	GACCGA	1 cut(s)	1461
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	4 cut(s)	410, 659, 821, 862
Tru1I	TTAA	5 cut(s)	77, 95, 132, 941, 1089
Tru9I	TTAA	5 cut(s)	77, 95, 132, 941, 1089
TscAI	CASTG	8 cut(s)	538, 759, 775, 784, 961, 1026, 1380, 1461
TseFI	GTSAC	4 cut(s)	119, 568, 814, 1354
TseI	GCWGC	2 cut(s)	631, 1451
Tsp45I	GTSAC	4 cut(s)	119, 568, 814, 1354
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	8 cut(s)	538, 759, 775, 784, 961, 1026, 1380, 1461
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	145, 1444
VspI	ATTAAT	1 cut(s)	941
XapI	RAATTY	2 cut(s)	247, 1237
XbaI	TCTAGA	1 cut(s)	1073
XceI	RCATGY	5 cut(s)	42, 750, 1218, 1300, 1400
XmiI	GTMKAC	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	1241
XspI	CTAG	3 cut(s)	309, 963, 1074
ZrmI	AGTACT	1 cut(s)	647
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.