Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008494

Physical Location & Seq

Genomic Coordinates Forward (+)

51453571 .. 51457974

Gene Structure 4404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGAAAGATGTAAAATCAAATCATCCCGTTCAAAAAGTGAATTCAAATATCCGGAGAGTAGCAGACAAGATAAATGAGATGAAAGATCAGATGATTAGAGCTAGAGCATACATGACTTTTGCACCACCTAATTCACAGTTGGTGAAGGAGTTGAGACTGCGAACTAAAGAGGTGGAACGTGTGGTTGGTAGAACCCACAAGGATTCTGATTTATCTCGGAGTGCTTTGCAGAAAATGAGAAACTTGGAGGCCTCACTATCCAAAGCCAGCCGTGCTTTCCCAGACTGCTCTGCAATGGCCACAAAACTACGTTCTATGACTCACAGTGCTGAAGAGCAAGTTGGGTTGCAGAAGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGCACTACCCCGAAAGGTCTTCATTGTCTTTCTATGCAGCTGACTGCAGAGTACTTTGCTCTGGATTCCGAGGAGAGGCAATTTCCTAACCAACACAAGTTGCATGATCCACAGCTCTACCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTAAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAGATTGTTTTCCATGTGGTGACTGATTCACTCAATTTTCCAGCATTGTCAATGTGGTTCTTATTGAATCCTCCTGGAAAAGCCACTATCCAAGTCCAGAGCATAGAGAGTTTTGAATGGTTGTCGACCAAGTATAAAAGACCATTAATTCAGAAGTCCACTGACCCTAGATATGCTTCTGAACTCAACCACCTCCGTTTCTATCTGCCTGATATCTTCCCTGCACTGAATAAGATCGTGCTATTTGACCATGATGTCGTTGTTCAAAGGGATCTATCTAGACTGTGGAGTGTTAATATGAAGGGGAAAGTCAATGGTGCAGTTGAGACTTGCCGGGATAATGAACCATCATTTTTACAGATGGATACATTTATCAACTTCTCAGATCCATATGTAGCAAATAGGTTTGATGTCAATGCATGCACATGGGCATTTGGCATGAATTTGTTCGATCTTCAAAATTGGAGGAGGCATAAGCTAACTACTCTATACCATAAATACATGCAATTGGGTTCTAAAAAGCCATTGTGGGTGGCTGGGAGTTTGCCTTTAGGTTGGGTCACCTTCTATAACCGGACAGTGGCTTTGGACAGGCGATGGCATGCTCTCGGGCTGGGTTATGACTCTGGTGTGGTTCAGGGGGATGTGGACCGAGCAGCAGTGATACATTATGATGGAATTATGAAGCCGTGGTTAGATATTGCAATTGGGAGGTACAAGGGGTATTGGAGCAAATATCTCAACTATGATCACTCTCATCTGCAGCGGTGCAACATTCATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

457

Amino Acids

52.61

Weight (kDa)

9.35

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	23 - 93	1.3e-22	Galacturonosyltransferase domain 1
Glyco_transf_8	PF01501	138 - 431	6e-61	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06780 AT1G06780 AT2G30575
fragaria_vesca	FvH4_2g22460 FvH4_2g22460
malus_domestica	MD05G1204900.v1.1 MD10G1192000.v1.1
prunus_persica	Prupe.8G231500_v2.0.a1 Prupe.8G231500_v2.0.a1
pyrus_communis	pycom05g19110 pycom10g16590
rosa_chinensis	RchiOBHm_Chr6g0289401
rosa_laevigata	RLG00000012307
rosa_multiflora	Rmu_co8414935.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179240
rosa_rugosa	Rorug06G0203100 Rorug06G0203200 Rorug06G0203300
rosa_samantha	Rh6AG314200 Rh6BG321800 Rh6CG328000 Rh6DG313700
rosa_wichuraiana	Rw6G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	713
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	1 cut(s)	1354
AclWI	GGATC	3 cut(s)	488, 867, 968
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	40, 1030
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	440, 1304
AfiI	CCNNNNNNNGG	2 cut(s)	462, 1168
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	32, 45, 655, 704, 854, 1046
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 324, 356
AluBI	AGCT	4 cut(s)	101, 427, 502, 1066
AluI	AGCT	4 cut(s)	101, 427, 502, 1066
Alw26I	GTCTC	2 cut(s)	148, 908
AlwI	GGATC	3 cut(s)	488, 867, 968
Ama87I	CYCGRG	1 cut(s)	1196
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	2 cut(s)	249, 297
ApeKI	GCWGC	3 cut(s)	424, 1244, 1351
ApoI	RAATTY	2 cut(s)	40, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	1156, 1188
AseI	ATTAAT	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspS9I	GGNCC	1 cut(s)	1237
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	154, 368, 619, 1141
AvaI	CYCGRG	1 cut(s)	1196
AvaII	GGWCC	1 cut(s)	1237
BalI	TGGCCA	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	398, 511
BbvI	GCAGC	3 cut(s)	436, 1256, 1363
BccI	CCATC	4 cut(s)	943, 943, 1179, 1256
BceAI	ACGGC	2 cut(s)	255, 1261
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	946
BclI	TGATCA	1 cut(s)	1336
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	148, 908
BfaI	CTAG	3 cut(s)	102, 756, 867
BfmI	CTRYAG	2 cut(s)	432, 1349
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	3 cut(s)	425, 1245, 1352
BlsI	GCNGC	3 cut(s)	426, 1246, 1353
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	2 cut(s)	663, 923
Bme18I	GGWCC	1 cut(s)	1237
BmeT110I	CYCGRG	1 cut(s)	1196
BmgT120I	GGNCC	1 cut(s)	1237
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	663, 923
BpiI	GAAGAC	2 cut(s)	398, 511
BpuMI	CCSGG	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	456, 576, 1277
BsaWI	WCCGGW	2 cut(s)	51, 1161
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 1168
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	456, 576, 1277
BseGI	GGATG	2 cut(s)	22, 1237
BseLI	CCNNNNNNNGG	2 cut(s)	462, 1168
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	984
BseRI	GAGGAG	2 cut(s)	473, 1069
BseXI	GCAGC	3 cut(s)	436, 1256, 1363
BseYI	CCCAGC	2 cut(s)	1124, 1201
BsgI	GTGCAG	3 cut(s)	564, 795, 927
BshFI	GGCC	2 cut(s)	251, 299
BsiHKCI	CYCGRG	1 cut(s)	1196
BsiSI	CCGG	3 cut(s)	52, 922, 1162
BslI	CCNNNNNNNGG	2 cut(s)	462, 1168
BsmAI	GTCTC	2 cut(s)	148, 908
BsnI	GGCC	2 cut(s)	251, 299
BsoBI	CYCGRG	1 cut(s)	1196
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	1 cut(s)	1354
BspANI	GGCC	2 cut(s)	251, 299
BspCNI	CTCAG	1 cut(s)	983
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	2 cut(s)	436, 1353
BspPI	GGATC	3 cut(s)	488, 867, 968
BspQI	GCTCTTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	456, 576, 1277
BssMI	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	5 cut(s)	138, 326, 565, 873, 1168
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	268, 1009, 1191
BstDEI	CTNAG	1 cut(s)	970
BstDSI	CCRYGG	2 cut(s)	576, 1277
BstEII	GGTNACC	1 cut(s)	1147
BstF5I	GGATG	2 cut(s)	22, 1237
BstKTI	GATC	7 cut(s)	88, 496, 825, 862, 976, 1042, 1339
BstMAI	GTCTC	2 cut(s)	148, 908
BstMBI	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 355
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	4 cut(s)	543, 1011, 1093, 1193
BstPI	GGTNACC	1 cut(s)	1147
BstSCI	CCNGG	2 cut(s)	661, 921
BstSFI	CTRYAG	2 cut(s)	432, 1349
BstV1I	GCAGC	3 cut(s)	436, 1256, 1363
BstV2I	GAAGAC	2 cut(s)	398, 511
BstX2I	RGATCY	2 cut(s)	859, 973
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	2 cut(s)	859, 973
BsuI	GTATCC	1 cut(s)	946
BsuRI	GGCC	2 cut(s)	251, 299
BtgI	CCRYGG	2 cut(s)	576, 1277
BtgZI	GCGATG	1 cut(s)	1198
BtsCI	GGATG	2 cut(s)	22, 1237
BtsI	GCAGTG	3 cut(s)	552, 570, 1254
BtsIMutI	CAGTG	8 cut(s)	331, 552, 561, 570, 747, 812, 1173, 1254
Cac8I	GCNNGC	3 cut(s)	268, 1009, 1191
Cfr13I	GGNCC	1 cut(s)	1237
Csp6I	GTAC	2 cut(s)	439, 1303
CviQI	GTAC	2 cut(s)	439, 1303
DdeI	CTNAG	1 cut(s)	970
DpnI	GATC	7 cut(s)	87, 495, 824, 861, 975, 1041, 1338
DpnII	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	1237
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	1196
Eco91I	GGTNACC	1 cut(s)	1147
EcoO65I	GGTNACC	1 cut(s)	1147
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	576
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	1336
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	3 cut(s)	425, 1245, 1352
FokI	GGATG	2 cut(s)	9, 1244
Fsp4HI	GCNGC	3 cut(s)	425, 1245, 1352
FspBI	CTAG	3 cut(s)	102, 756, 867
GluI	GCNGC	3 cut(s)	425, 1245, 1352
GsaI	CCCAGC	2 cut(s)	1128, 1205
HaeIII	GGCC	2 cut(s)	251, 299
HapII	CCGG	3 cut(s)	52, 922, 1162
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	6 cut(s)	203, 319, 452, 614, 655, 1211
HpaII	CCGG	3 cut(s)	52, 922, 1162
HphI	GGTGA	4 cut(s)	154, 368, 619, 1141
Hpy166II	GTNNAC	4 cut(s)	556, 714, 747, 1237
Hpy188I	TCNGA	8 cut(s)	90, 208, 219, 457, 526, 741, 769, 973
Hpy188III	TCNNGA	4 cut(s)	52, 449, 685, 867
Hpy8I	GTNNAC	4 cut(s)	556, 714, 747, 1237
HpyAV	CCTTC	3 cut(s)	139, 883, 1162
HpyCH4III	ACNGT	5 cut(s)	138, 326, 565, 873, 1168
HpyCH4IV	ACGT	2 cut(s)	178, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 355
HpyF3I	CTNAG	1 cut(s)	970
HpySE526I	ACGT	2 cut(s)	178, 310
Kpn2I	TCCGGA	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	1336
Kzo9I	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	1317
Lsp1109I	GCAGC	3 cut(s)	436, 1256, 1363
MaeI	CTAG	3 cut(s)	102, 756, 867
MaeII	ACGT	2 cut(s)	178, 310
MaeIII	GTNAC	3 cut(s)	361, 607, 1147
MalI	GATC	7 cut(s)	87, 495, 824, 861, 975, 1041, 1338
MboI	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
MboII	GAAGA	7 cut(s)	344, 364, 398, 511, 601, 796, 1034
MfeI	CAATTG	2 cut(s)	1094, 1293
MflI	RGATCY	2 cut(s)	859, 973
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	313, 1205
MmeI	TCCRAC	1 cut(s)	549
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	1009
MroI	TCCGGA	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	2 cut(s)	734, 882
MslI	CAYNNNNRTG	3 cut(s)	575, 1012, 1260
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	2 cut(s)	427, 1354
MspI	CCGG	3 cut(s)	52, 922, 1162
MspR9I	CCNGG	2 cut(s)	663, 923
MunI	CAATTG	2 cut(s)	1094, 1293
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	272, 355
NciI	CCSGG	1 cut(s)	923
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	3 cut(s)	361, 607, 1147
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	4 cut(s)	543, 1011, 1093, 1193
PaeI	GCATGC	2 cut(s)	1011, 1193
PceI	AGGCCT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	4 cut(s)	203, 452, 614, 655
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	3 cut(s)	426, 1246, 1353
PleI	GAGTC	2 cut(s)	313, 1205
PpsI	GAGTC	2 cut(s)	313, 1205
PshBI	ATTAAT	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	661
PspEI	GGTNACC	1 cut(s)	1147
PspFI	CCCAGC	2 cut(s)	1124, 1201
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	1237
PstI	CTGCAG	2 cut(s)	436, 1353
PsuI	RGATCY	2 cut(s)	859, 973
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	2 cut(s)	440, 1304
RsaNI	GTAC	2 cut(s)	439, 1303
RseI	CAYNNNNRTG	3 cut(s)	575, 1012, 1260
SalI	GTCGAC	1 cut(s)	712
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	734, 882
SatI	GCNGC	3 cut(s)	425, 1245, 1352
Sau3AI	GATC	7 cut(s)	85, 493, 822, 859, 973, 1039, 1336
Sau96I	GGNCC	1 cut(s)	1237
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	2 cut(s)	313, 1205
ScrFI	CCNGG	2 cut(s)	663, 923
SfcI	CTRYAG	2 cut(s)	432, 1349
SinI	GGWCC	1 cut(s)	1237
SmiMI	CAYNNNNRTG	3 cut(s)	575, 1012, 1260
SphI	GCATGC	2 cut(s)	1011, 1193
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	1354
SspMI	CTAG	3 cut(s)	102, 756, 867
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	661, 921
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	5 cut(s)	138, 326, 565, 873, 1168
TaiI	ACGT	2 cut(s)	181, 313
TaqI	TCGA	2 cut(s)	713, 1038
TaqII	GACCGA	1 cut(s)	1254
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	4 cut(s)	203, 452, 614, 655
Tru1I	TTAA	2 cut(s)	734, 882
Tru9I	TTAA	2 cut(s)	734, 882
TscAI	CASTG	8 cut(s)	331, 552, 568, 577, 754, 819, 1173, 1254
TseFI	GTSAC	3 cut(s)	361, 607, 1147
TseI	GCWGC	3 cut(s)	424, 1244, 1351
Tsp45I	GTSAC	3 cut(s)	361, 607, 1147
TspDTI	ATGAA	8 cut(s)	17, 95, 398, 902, 945, 1043, 1286, 1355
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	8 cut(s)	331, 552, 568, 577, 754, 819, 1173, 1254
VpaK11BI	GGWCC	1 cut(s)	1237
VspI	ATTAAT	1 cut(s)	734
XapI	RAATTY	2 cut(s)	40, 1030
XbaI	TCTAGA	1 cut(s)	866
XceI	RCATGY	4 cut(s)	543, 1011, 1093, 1193
XmiI	GTMKAC	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	3 cut(s)	102, 756, 867
ZrmI	AGTACT	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.