Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008494

Physical Location & Seq

Genomic Coordinates Forward (+)

32548044 .. 32548508

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0203100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGGCAAGCTGCTCACTGCTCGAGAGTACAATAATCGATCTTTTCTGGGGATGTTCCGGAATGCCTGGCGGGTGCATGGATCACTCCGTGTAGAGGAGGCGGAGGGACTGAGGGTTCTGTTCACCCTCTCTGACGCTACCGATCGGGATCGGATATGGAAGGGAGCGCCATGGGGGTACAATCATGCTCCGGTTGCCCTAGCCTACTATGATGGGGTGGCTGCCATTGATTCGGTCCCTTTCACCACAGCCTCGTACTGGATCACTTTGCAAGGAATCCCGCCTGCATTCCGTTCTGAGAGGGTGATGTCCTTGATCGGATTTACTCTTGGAGATTTCAAGGAGATCGACAAACAGGCCAAGAAAGTTGGAAAATATCGCATCAGGGTGGAGATCCCTCTCAACAGGCCGCTGCCATTCCAACGCTGGTACTGGGTGGAGGATGAGGTCGAGTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

154

Amino Acids

17.85

Weight (kDa)

9.22

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06780 AT1G06780 AT2G30575
fragaria_vesca	FvH4_2g22460 FvH4_2g22460
malus_domestica	MD05G1204900.v1.1 MD10G1192000.v1.1
prunus_persica	Prupe.8G231500_v2.0.a1 Prupe.8G231500_v2.0.a1
pyrus_communis	pycom05g19110 pycom10g16590
rosa_chinensis	RchiOBHm_Chr6g0289401
rosa_laevigata	RLG00000012307
rosa_multiflora	Rmu_co8414935.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179240
rosa_rugosa	Rorug06G0203100 Rorug06G0203200 Rorug06G0203300
rosa_samantha	Rh6AG314200 Rh6BG321800 Rh6CG328000 Rh6DG313700
rosa_wichuraiana	Rw6G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	4 cut(s)	73, 104, 284, 413
AclWI	GGATC	4 cut(s)	91, 159, 272, 391
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	4 cut(s)	32, 182, 260, 434
AfiI	CCNNNNNNNGG	2 cut(s)	97, 261
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwI	GGATC	4 cut(s)	91, 159, 272, 391
Ama87I	CYCGRG	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	2 cut(s)	360, 410
ApeKI	GCWGC	3 cut(s)	13, 224, 415
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	118, 238, 319
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	211, 402
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	4 cut(s)	14, 225, 413, 416
BlsI	GCNGC	4 cut(s)	15, 226, 414, 417
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	2 cut(s)	60, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 261
Bse1I	ACTGG	2 cut(s)	266, 440
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	70
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	60, 451
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	97, 261
BseMII	CTCAG	2 cut(s)	104, 291
BseNI	ACTGG	2 cut(s)	266, 440
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	211, 402
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	362, 412
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	61, 194
BslFI	GGGAC	2 cut(s)	123, 224
BslI	CCNNNNNNNGG	2 cut(s)	97, 261
BsmFI	GGGAC	2 cut(s)	123, 224
BsmI	GAATGC	2 cut(s)	70, 290
BsnI	GGCC	2 cut(s)	362, 412
BsoBI	CYCGRG	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	4 cut(s)	73, 104, 284, 413
BspANI	GGCC	2 cut(s)	362, 412
BspCNI	CTCAG	2 cut(s)	105, 292
BspDI	ATCGAT	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	4 cut(s)	91, 159, 272, 391
BsrI	ACTGG	2 cut(s)	266, 440
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	11, 288
BstDEI	CTNAG	2 cut(s)	113, 300
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	60, 451
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	8 cut(s)	44, 86, 148, 154, 267, 321, 351, 399
BstMBI	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	211, 402
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	362, 412
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	60, 451
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	11, 288
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	31, 181, 259, 433
CviAII	CATG	3 cut(s)	80, 174, 188
CviJI	RGCY	6 cut(s)	13, 206, 224, 254, 362, 412
CviKI_1	RGCY	6 cut(s)	13, 206, 224, 254, 362, 412
CviQI	GTAC	4 cut(s)	31, 181, 259, 433
DdeI	CTNAG	2 cut(s)	113, 300
DpnI	GATC	8 cut(s)	43, 85, 147, 153, 266, 320, 350, 398
DpnII	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
DraIII	CACNNNGTG	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	3 cut(s)	83, 177, 191
FaiI	YATR	6 cut(s)	81, 160, 175, 189, 213, 463
FaqI	GGGAC	2 cut(s)	123, 224
FatI	CATG	3 cut(s)	79, 173, 187
FauI	CCCGC	2 cut(s)	66, 291
Fnu4HI	GCNGC	4 cut(s)	14, 225, 413, 416
FokI	GGATG	2 cut(s)	67, 458
Fsp4HI	GCNGC	4 cut(s)	14, 225, 413, 416
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	14, 225, 413, 416
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	362, 412
HapII	CCGG	2 cut(s)	61, 194
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	83, 177, 191
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	233, 279
HpaII	CCGG	2 cut(s)	61, 194
HphI	GGTGA	3 cut(s)	118, 238, 319
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	136, 156, 301, 323
Hpy188III	TCNNGA	3 cut(s)	26, 61, 149
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	79, 274, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	113, 300
Hsp92II	CATG	3 cut(s)	83, 177, 191
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	60
Kzo9I	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
LmnI	GCTCC	2 cut(s)	167, 196
Lsp1109I	GCAGC	2 cut(s)	211, 402
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	203
MalI	GATC	8 cut(s)	43, 85, 147, 153, 266, 320, 350, 398
MboI	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
MflI	RGATCY	1 cut(s)	396
MmeI	TCCRAC	2 cut(s)	352, 448
MroI	TCCGGA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	2 cut(s)	61, 194
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	2 cut(s)	70, 290
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
NlaIII	CATG	3 cut(s)	83, 177, 191
NlaIV	GGNNCC	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	24
PctI	GAATGC	2 cut(s)	70, 290
PfeI	GAWTC	2 cut(s)	233, 279
PkrI	GCNGC	4 cut(s)	15, 226, 414, 417
Ple19I	CGATCG	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	396
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	4 cut(s)	32, 182, 260, 434
RsaNI	GTAC	4 cut(s)	31, 181, 259, 433
RseI	CAYNNNNRTG	1 cut(s)	389
SatI	GCNGC	4 cut(s)	14, 225, 413, 416
Sau3AI	GATC	8 cut(s)	41, 83, 145, 151, 264, 318, 348, 396
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	2 cut(s)	15, 453
SfaNI	GCATC	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SsiI	CCGC	4 cut(s)	73, 104, 284, 413
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	173
TaqI	TCGA	4 cut(s)	25, 40, 351, 453
TaqII	GACCGA	1 cut(s)	226
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	233, 279
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	3 cut(s)	13, 224, 415
TspGWI	ACGGA	2 cut(s)	80, 284
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.