FvH4_2g22460

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
18430431 .. 18434786
4356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22460.t2

Sequence Viewer

Length: 1860 bp
ATGAAGCCATTTCGTCGATGCCAGAGGATCCTCATCCTCGCTCTGCTCTCGCTCTCTGTTTTCGCTCCAATCCTCTTCGTCTCCCAAAGGCTCAAGAATCTCAATTATACCGGGCGGAAGGAGTTCGTTGAAGATTTATCCAATATTAAATACAGGACTGATAGTTTGAAGCTTAGTGCTGTTGAGCAGGAAGCGGGTGAGGGTTTGAAAGAGCCAAGGAAAGTTTTGTATGAAGATAAGGATGTAGTTTCTGCTGTTAGTTACAGTCTTGGTGAGAATCAAGATGGTAAGGGATCTGGAAATGTTGGAGGCACTACTGATATTGCGGAAAGAACTGAAAATGGAACCAATGATGGGAGCAAAGATATACAATTTCAGCAGAGAGAAATGTCATCTGCTTCTGGTGAAAAGGGGAAACTTAACCAAGCATTGGTCCAACATGAACAGAGTGTAGTGTCTCAGTCAAGGAAAGTGATAGATCAGAGAATAAGAGAGATCAAATCAAACCATCCTGTTCAAAAAGTGAATTCAAATATCCAGAGAGTGACAGACAAAATAAATGAGATGAAAGATCAGATGATTAGAGCTAAAGCATACATGACTTTTGCACCACCTAACTCACAATTGGTGAAGGAGTTGAGACTGCGAACTAAAGAGGTGGAACGTGTGGTTGGTAGAACCCACAAGGATTCTGATTTATCTCGGAGCGGTTTGCAGAAAATGAGAAACTTGGAGGCCTCACTATCCAAAGCCAGCCGTGCTTTCCCAGACTGCTCTGCCATGACCACAAAACTACGTTCAATGACTCACAGTGCTGAAGAGCAAGTTGGGTTGCAGAGGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGCACTACCCCAAAAGGTCTTCATTGTCTTTCTATGCAGTTGACTGCAGAGTATTTCGCTTTGGAGTCCAAGGAAAGGCAATTTCCTAACCAACACAAGTTGCATGATCCGCAGCTCTATCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCCGTGGTTGTGAACTCCACTGTTTCCACTGCCCTGGAACCAGAGAAGATTGTTTTCCATGTGGTGACTGATTTGCTCAATTTTCCAGCCTTGTCAATGTGGTTCTTGTTGAATCCTCCGGGAAAAGCCACTATCCAAGTCCAGAGCATAGAGAGTTTTGAATGGTTGTCTACCAAGCATAAGAGACCATTAATTCAGAAGTCCACTAACCCTAGATATACATCTGAACTCAACCACCTCCGTTTCTATCTGCCTGACATTTTCCCTGCACTGAATAAGGTCGTGCTATTTGACCATGATGTCGTAGTTCAAAGGGATCTATCTAGACTGTGGAGTGTTAATATGAAGGGGAAAGTCAATGCCGCAGTTGAGACTTGCCGGGATAGTGAACCATCATTTTTAGAGATGGATACATTTATTAACTTCTCAGATCCATACGTGGCAAATAGGTTTGATGTTAATGCGTGCACATGGGCATTTGGCATGAACTTGTTCAATCTTCAAAATTGGAGGAGGCATAAGCTAACAACTCTATACCATAAATACATGCAATTGGGTTCGAAGAGGCCATTGTGGGTGGCTGGGAGTTTGCCTTTAGGTTGGATCACCTTCTATAACCAGACATTGGCATTGGACAGACGATGGCATGCTCTCGGGCTGGGTTATGAATCGGGTGTGGTTCAGGGCGATGTGGAGCGAGCAGCAGTGATACACTATGATGGAATTATGAAGCCGTGGTTAGATATTGCAATTGGGAGGTACAAGGGGTATTGGAGCAAATATCTCAACTATGATCACTCTCATCTGCAGCGGTGCAACATTCATGCGTAG

Protein Analysis

620

Amino Acids

70.74

Weight (kDa)

9.33

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 187 - 257 1.8e-21 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 302 - 595 1.3e-61 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1328
AccB7I CCANNNNNTGG 2 cut(s) 430, 1654
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 1199
AciI CCGC 7 cut(s) 115, 194, 326, 708, 983, 1392, 1840
AclWI GGATC 7 cut(s) 22, 35, 301, 974, 1353, 1454, 1640
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 1 cut(s) 1790
AfiI CCNNNNNNNGG 4 cut(s) 354, 430, 948, 1654
AflIII ACRYGT 1 cut(s) 664
AjnI CCWGG 1 cut(s) 1062
AjuI GAANNNNNNNTTGG 4 cut(s) 654, 686, 810, 842
AluBI AGCT 4 cut(s) 172, 587, 988, 1552
AluI AGCT 4 cut(s) 172, 587, 988, 1552
Alw21I GWGCWC 1 cut(s) 1499
Alw26I GTCTC 5 cut(s) 85, 462, 634, 1207, 1394
Alw44I GTGCAC 1 cut(s) 1495
AlwI GGATC 7 cut(s) 22, 35, 301, 974, 1353, 1454, 1640
Ama87I CYCGRG 1 cut(s) 1682
AoxI GGCC 2 cut(s) 735, 1595
ApaLI GTGCAC 1 cut(s) 1495
ApeKI GCWGC 3 cut(s) 985, 1730, 1837
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AseI ATTAAT 1 cut(s) 1220
Asp700I GAANNNNTTC 2 cut(s) 122, 1520
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 3 cut(s) 112, 1149, 1409
AsuHPI GGTGA 7 cut(s) 209, 284, 416, 640, 854, 1105, 1627
AsuII TTCGAA 1 cut(s) 1589
AvaI CYCGRG 1 cut(s) 1682
AvaII GGWCC 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 1499
BamHI GGATCC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 884, 997
Bbv12I GWGCWC 1 cut(s) 1499
BbvI GCAGC 3 cut(s) 997, 1742, 1849
BccI CCATC 7 cut(s) 278, 347, 516, 1429, 1429, 1665, 1742
BceAI ACGGC 3 cut(s) 741, 1016, 1747
BciT130I CCWGG 1 cut(s) 1064
BciVI GTATCC 1 cut(s) 1432
BclI TGATCA 1 cut(s) 1822
BcnI CCSGG 3 cut(s) 112, 1149, 1409
BcoDI GTCTC 5 cut(s) 85, 462, 634, 1207, 1394
BfaI CTAG 2 cut(s) 1242, 1353
BfmI CTRYAG 2 cut(s) 918, 1835
BfuI GTATCC 1 cut(s) 1432
BisI GCNGC 4 cut(s) 986, 1392, 1731, 1838
BlsI GCNGC 4 cut(s) 987, 1393, 1732, 1839
Bme1390I CCNGG 4 cut(s) 112, 1064, 1149, 1409
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 1682
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 3 cut(s) 29, 346, 1068
BmrFI CCNGG 4 cut(s) 112, 1064, 1149, 1409
BmsI GCATC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 884, 997
Bpu14I TTCGAA 1 cut(s) 1589
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 3 cut(s) 112, 1149, 1409
BsaAI YACGTR 1 cut(s) 1468
BsaBI GATNNNNATC 2 cut(s) 32, 1249
BsaI GGTCTC 1 cut(s) 1207
BsaJI CCNNGG 5 cut(s) 215, 942, 1032, 1062, 1763
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 430, 948, 1654
Bse8I GATNNNNATC 2 cut(s) 32, 1249
BseBI CCWGG 1 cut(s) 1064
BseDI CCNNGG 5 cut(s) 215, 942, 1032, 1062, 1763
BseGI GGATG 3 cut(s) 33, 247, 508
BseJI GATNNNNATC 2 cut(s) 32, 1249
BseLI CCNNNNNNNGG 4 cut(s) 354, 430, 948, 1654
BseMII CTCAG 2 cut(s) 473, 1470
BseRI GAGGAG 1 cut(s) 1555
BseSI GKGCMC 1 cut(s) 1499
BseXI GCAGC 3 cut(s) 997, 1742, 1849
BseYI CCCAGC 2 cut(s) 1610, 1687
BsgI GTGCAG 1 cut(s) 1281
BshFI GGCC 2 cut(s) 737, 1597
BsiHKAI GWGCWC 1 cut(s) 1499
BsiHKCI CYCGRG 1 cut(s) 1682
BsiSI CCGG 3 cut(s) 111, 1148, 1408
BslI CCNNNNNNNGG 4 cut(s) 354, 430, 948, 1654
BsmAI GTCTC 5 cut(s) 85, 462, 634, 1207, 1394
BsmBI CGTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 737, 1597
Bso31I GGTCTC 1 cut(s) 1207
BsoBI CYCGRG 1 cut(s) 1682
Bsp119I TTCGAA 1 cut(s) 1589
Bsp1286I GDGCHC 1 cut(s) 1499
BspACI CCGC 7 cut(s) 115, 194, 326, 708, 983, 1392, 1840
BspANI GGCC 2 cut(s) 737, 1597
BspCNI CTCAG 2 cut(s) 472, 1469
BspLI GGNNCC 3 cut(s) 29, 346, 1068
BspMAI CTGCAG 2 cut(s) 922, 1839
BspPI GGATC 7 cut(s) 22, 35, 301, 974, 1353, 1454, 1640
BspQI GCTCTTC 1 cut(s) 813
BspT104I TTCGAA 1 cut(s) 1589
BspTNI GGTCTC 1 cut(s) 1207
BsrBI CCGCTC 1 cut(s) 708
BssECI CCNNGG 5 cut(s) 215, 942, 1032, 1062, 1763
BssT1I CCWWGG 2 cut(s) 215, 942
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 4 cut(s) 266, 812, 1051, 1359
Bst6I CTCTTC 3 cut(s) 80, 813, 1586
BstBAI YACGTR 1 cut(s) 1468
BstBI TTCGAA 1 cut(s) 1589
BstC8I GCNNGC 4 cut(s) 754, 1495, 1677, 1728
BstDEI CTNAG 3 cut(s) 173, 459, 1456
BstDSI CCRYGG 2 cut(s) 1032, 1763
BstF5I GGATG 3 cut(s) 33, 247, 508
BstMAI GTCTC 5 cut(s) 85, 462, 634, 1207, 1394
BstMWI GCNNNNNNNGC 3 cut(s) 758, 841, 982
BstNI CCWGG 1 cut(s) 1064
BstNSI RCATGY 3 cut(s) 1029, 1579, 1679
BstSCI CCNGG 4 cut(s) 110, 1062, 1147, 1407
BstSFI CTRYAG 2 cut(s) 918, 1835
BstSLI GKGCMC 1 cut(s) 1499
BstV1I GCAGC 3 cut(s) 997, 1742, 1849
BstV2I GAAGAC 2 cut(s) 884, 997
BstX2I RGATCY 4 cut(s) 27, 293, 1345, 1459
BstXI CCANNNNNNTGG 1 cut(s) 1063
BstYI RGATCY 4 cut(s) 27, 293, 1345, 1459
BsuI GTATCC 1 cut(s) 1432
BsuRI GGCC 2 cut(s) 737, 1597
BtgI CCRYGG 2 cut(s) 1032, 1763
BtgZI GCGATG 1 cut(s) 1731
BtsCI GGATG 3 cut(s) 33, 247, 508
BtsI GCAGTG 2 cut(s) 1056, 1740
BtsIMutI CAGTG 5 cut(s) 817, 1047, 1056, 1298, 1740
Cac8I GCNNGC 4 cut(s) 754, 1495, 1677, 1728
Cfr13I GGNCC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 1789
CviQI GTAC 1 cut(s) 1789
DdeI CTNAG 3 cut(s) 173, 459, 1456
DrdI GACNNNNNNGTC 1 cut(s) 1328
DseDI GACNNNNNNGTC 1 cut(s) 1328
Eam1104I CTCTTC 3 cut(s) 80, 813, 1586
EarI CTCTTC 3 cut(s) 80, 813, 1586
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 215, 942
Eco147I AGGCCT 1 cut(s) 737
Eco31I GGTCTC 1 cut(s) 1207
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 1682
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 1062
EcoT14I CCWWGG 2 cut(s) 215, 942
ErhI CCWWGG 2 cut(s) 215, 942
Esp3I CGTCTC 1 cut(s) 85
FauI CCCGC 1 cut(s) 187
FbaI TGATCA 1 cut(s) 1822
FblI GTMKAC 1 cut(s) 1199
Fnu4HI GCNGC 4 cut(s) 986, 1392, 1731, 1838
FokI GGATG 3 cut(s) 20, 254, 495
Fsp4HI GCNGC 4 cut(s) 986, 1392, 1731, 1838
FspBI CTAG 2 cut(s) 1242, 1353
GluI GCNGC 4 cut(s) 986, 1392, 1731, 1838
GsaI CCCAGC 2 cut(s) 1614, 1691
HaeIII GGCC 2 cut(s) 737, 1597
HapII CCGG 3 cut(s) 111, 1148, 1408
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 7 cut(s) 97, 277, 689, 805, 938, 1141, 1697
HpaII CCGG 3 cut(s) 111, 1148, 1408
HphI GGTGA 7 cut(s) 209, 284, 416, 640, 854, 1105, 1627
Hpy166II GTNNAC 6 cut(s) 915, 1042, 1200, 1233, 1418, 1497
Hpy188I TCNGA 8 cut(s) 483, 576, 694, 705, 1012, 1227, 1255, 1459
Hpy188III TCNNGA 6 cut(s) 94, 281, 297, 538, 1171, 1353
Hpy8I GTNNAC 6 cut(s) 915, 1042, 1200, 1233, 1418, 1497
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 4 cut(s) 112, 625, 1369, 1648
HpyCH4III ACNGT 4 cut(s) 266, 812, 1051, 1359
HpyCH4IV ACGT 3 cut(s) 664, 796, 1467
HpyF10VI GCNNNNNNNGC 3 cut(s) 758, 841, 982
HpyF3I CTNAG 3 cut(s) 173, 459, 1456
HpySE526I ACGT 3 cut(s) 664, 796, 1467
Ksp22I TGATCA 1 cut(s) 1822
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 5 cut(s) 70, 357, 705, 1723, 1803
Lsp1109I GCAGC 3 cut(s) 997, 1742, 1849
LweI GCATC 1 cut(s) 8
MaeI CTAG 2 cut(s) 1242, 1353
MaeII ACGT 3 cut(s) 664, 796, 1467
MaeIII GTNAC 4 cut(s) 260, 544, 847, 1093
MbiI CCGCTC 1 cut(s) 708
MboII GAAGA 9 cut(s) 67, 143, 245, 830, 884, 997, 1087, 1520, 1603
MfeI CAATTG 3 cut(s) 623, 1580, 1779
MflI RGATCY 4 cut(s) 27, 293, 1345, 1459
MhlI GDGCHC 1 cut(s) 1499
MlyI GAGTC 2 cut(s) 799, 947
MmeI TCCRAC 4 cut(s) 286, 460, 1035, 1610
MroXI GAANNNNTTC 2 cut(s) 122, 1520
MseI TTAA 6 cut(s) 147, 420, 1220, 1368, 1449, 1488
MslI CAYNNNNRTG 1 cut(s) 1746
MspA1I CMGCKG 1 cut(s) 1840
MspI CCGG 3 cut(s) 111, 1148, 1408
MspR9I CCNGG 4 cut(s) 112, 1064, 1149, 1409
MunI CAATTG 3 cut(s) 623, 1580, 1779
MvaI CCWGG 1 cut(s) 1064
MwoI GCNNNNNNNGC 3 cut(s) 758, 841, 982
NciI CCSGG 3 cut(s) 112, 1149, 1409
NlaIV GGNNCC 3 cut(s) 29, 346, 1068
NmuCI GTSAC 3 cut(s) 544, 847, 1093
NspI RCATGY 3 cut(s) 1029, 1579, 1679
NspV TTCGAA 1 cut(s) 1589
PaeI GCATGC 1 cut(s) 1679
PceI AGGCCT 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 813
PdmI GAANNNNTTC 2 cut(s) 122, 1520
PfeI GAWTC 5 cut(s) 97, 277, 689, 1141, 1697
PflMI CCANNNNNTGG 2 cut(s) 430, 1654
PfoI TCCNGGA 1 cut(s) 1147
PkrI GCNGC 4 cut(s) 987, 1393, 1732, 1839
PleI GAGTC 2 cut(s) 799, 946
PpsI GAGTC 2 cut(s) 799, 946
Ppu21I YACGTR 1 cut(s) 1468
PshBI ATTAAT 1 cut(s) 1220
Psp6I CCWGG 1 cut(s) 1062
PspFI CCCAGC 2 cut(s) 1610, 1687
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 3 cut(s) 29, 346, 1068
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 2 cut(s) 922, 1839
PsuI RGATCY 4 cut(s) 27, 293, 1345, 1459
RsaI GTAC 1 cut(s) 1790
RsaNI GTAC 1 cut(s) 1789
RseI CAYNNNNRTG 1 cut(s) 1746
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 6 cut(s) 147, 420, 1220, 1368, 1449, 1488
SatI GCNGC 4 cut(s) 986, 1392, 1731, 1838
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 799, 947
ScrFI CCNGG 4 cut(s) 112, 1064, 1149, 1409
SduI GDGCHC 1 cut(s) 1499
SfaNI GCATC 1 cut(s) 8
SfcI CTRYAG 2 cut(s) 918, 1835
SfuI TTCGAA 1 cut(s) 1589
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 1746
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SphI GCATGC 1 cut(s) 1679
SseBI AGGCCT 1 cut(s) 737
SsiI CCGC 7 cut(s) 115, 194, 326, 708, 983, 1392, 1840
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 1242, 1353
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 4 cut(s) 110, 1062, 1147, 1407
StyI CCWWGG 2 cut(s) 215, 942
TaaI ACNGT 4 cut(s) 266, 812, 1051, 1359
TaiI ACGT 3 cut(s) 667, 799, 1470
TaqI TCGA 2 cut(s) 16, 1589
TauI GCSGC 1 cut(s) 1394
TfiI GAWTC 5 cut(s) 97, 277, 689, 1141, 1697
Tru1I TTAA 6 cut(s) 147, 420, 1220, 1368, 1449, 1488
Tru9I TTAA 6 cut(s) 147, 420, 1220, 1368, 1449, 1488
TscAI CASTG 5 cut(s) 817, 1054, 1063, 1305, 1740
TseFI GTSAC 3 cut(s) 544, 847, 1093
TseI GCWGC 3 cut(s) 985, 1730, 1837
Tsp45I GTSAC 3 cut(s) 544, 847, 1093
TspGWI ACGGA 1 cut(s) 1259
TspRI CASTG 5 cut(s) 817, 1054, 1063, 1305, 1740
Van91I CCANNNNNTGG 2 cut(s) 430, 1654
VneI GTGCAC 1 cut(s) 1495
VpaK11BI GGWCC 1 cut(s) 433
VspI ATTAAT 1 cut(s) 1220
XapI RAATTY 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 1352
XceI RCATGY 3 cut(s) 1029, 1579, 1679
XmiI GTMKAC 1 cut(s) 1199
XmnI GAANNNNTTC 2 cut(s) 122, 1520
XspI CTAG 2 cut(s) 1242, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.