Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414935.1

Orthogroup ID

OG0008494

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1367

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

tgctttgcagaaaatgagaaacttggaggcctcactatccaaagccagccgtgccttcccagactgctctgccatggccacaaaactacgttctatgactcacagtgctgaagagcaagttgggttgcagaagaagcaagtcacatttctttatcaccttgctggaagcactaccccgaaaggtcttcattgtctttctatgcagctgattgcagagtactttgctctggattccaaggagaggcaatttcctaaccaacacaagttgcatgatccacagctctaccattatgctgtcttctccgacaatgttctggcatgtgcagtggttgtgaactccactgtttccactgccaaggaaccagagaagattgttttccatgtggtgactgattcactcaattttccagcattgtcaatgtggttcttattgaatcctcctggaaaagccactatccaagtccagagcattgagagttttgaatggttgtctaccaagtataaaagaccattaattcagaagtccactgaccctagatatgcttctgaactcaaccacctccgtttctatctgcctgatatcttccctgcactgaataagattgtgctatttgaccatgatgtcgtagttcaaagggatctatctagactgtggagtgttaatatgaaggggaaagtcaatggtgcagttgagacttgccgggataatgaaccatcatttttacagatggatacatttatcaacttctcagatccatatgtggcaaataggtttgatgtcaatgcatgcacatgggcatttggcatgaatttgttcaatcttcaaaattggaggaggcataagctaactactctataccataaatacatgcaattggtaataagactttctaccttacaagcctttaatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

304

Amino Acids

34.9

Weight (kDa)

9.1

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06780 AT1G06780 AT2G30575
fragaria_vesca	FvH4_2g22460 FvH4_2g22460
malus_domestica	MD05G1204900.v1.1 MD10G1192000.v1.1
prunus_persica	Prupe.8G231500_v2.0.a1 Prupe.8G231500_v2.0.a1
pyrus_communis	pycom05g19110 pycom10g16590
rosa_chinensis	RchiOBHm_Chr6g0289401
rosa_laevigata	RLG00000012307
rosa_multiflora	Rmu_co8414935.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179240
rosa_rugosa	Rorug06G0203100 Rorug06G0203200 Rorug06G0203300
rosa_samantha	Rh6AG314200 Rh6BG321800 Rh6CG328000 Rh6DG313700
rosa_wichuraiana	Rw6G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	492
AclWI	GGATC	3 cut(s)	267, 646, 747
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	5 cut(s)	434, 483, 633, 818, 825
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	3 cut(s)	206, 281, 845
AluI	AGCT	3 cut(s)	206, 281, 845
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	3 cut(s)	267, 646, 747
AoxI	GGCC	2 cut(s)	28, 76
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	809
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	813
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	147, 398
BalI	TGGCCA	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	177, 290
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	2 cut(s)	722, 722
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	2 cut(s)	535, 646
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	442, 702
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	442, 702
BpiI	GAAGAC	2 cut(s)	177, 290
BpuMI	CCSGG	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	73, 235, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	73, 235, 355
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	763
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	1 cut(s)	215
BsgI	GTGCAG	3 cut(s)	343, 574, 706
BshFI	GGCC	2 cut(s)	30, 78
BsiSI	CCGG	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	30, 78
Bsp143I	GATC	3 cut(s)	272, 638, 752
Bsp19I	CCATGG	1 cut(s)	73
BspANI	GGCC	2 cut(s)	30, 78
BspCNI	CTCAG	1 cut(s)	762
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	3 cut(s)	267, 646, 747
BspQI	GCTCTTC	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	73, 235, 355
BssMI	GATC	3 cut(s)	272, 638, 752
BssT1I	CCWWGG	3 cut(s)	73, 235, 355
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	105, 344, 652
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	47, 788
BstDEI	CTNAG	1 cut(s)	749
BstDSI	CCRYGG	1 cut(s)	73
BstKTI	GATC	3 cut(s)	275, 641, 755
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	3 cut(s)	272, 638, 752
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 134, 909
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	3 cut(s)	322, 790, 872
BstSCI	CCNGG	2 cut(s)	440, 700
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	2 cut(s)	177, 290
BstX2I	RGATCY	2 cut(s)	638, 752
BstYI	RGATCY	2 cut(s)	638, 752
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	2 cut(s)	30, 78
BtgI	CCRYGG	1 cut(s)	73
BtsI	GCAGTG	2 cut(s)	331, 349
BtsIMutI	CAGTG	6 cut(s)	110, 331, 340, 349, 526, 591
Cac8I	GCNNGC	2 cut(s)	47, 788
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	9 cut(s)	74, 270, 319, 381, 618, 787, 793, 806, 869
CviJI	RGCY	9 cut(s)	30, 45, 49, 78, 206, 281, 450, 845, 903
CviKI_1	RGCY	9 cut(s)	30, 45, 49, 78, 206, 281, 450, 845, 903
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	749
DpnI	GATC	3 cut(s)	274, 640, 754
DpnII	GATC	3 cut(s)	272, 638, 752
DrdI	GACNNNNNNGTC	1 cut(s)	621
DseDI	GACNNNNNNGTC	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	3 cut(s)	73, 235, 355
Eco147I	AGGCCT	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	3 cut(s)	73, 235, 355
EcoT22I	ATGCAT	1 cut(s)	788
ErhI	CCWWGG	3 cut(s)	73, 235, 355
FaeI	CATG	9 cut(s)	77, 273, 322, 384, 621, 790, 796, 809, 872
FatI	CATG	9 cut(s)	73, 269, 318, 380, 617, 786, 792, 805, 868
FauNDI	CATATG	1 cut(s)	758
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	535, 646
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	30, 78
HapII	CCGG	1 cut(s)	701
Hin1II	CATG	9 cut(s)	77, 273, 322, 384, 621, 790, 796, 809, 872
HinfI	GANTC	4 cut(s)	98, 231, 393, 434
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	2 cut(s)	147, 398
Hpy166II	GTNNAC	3 cut(s)	335, 493, 526
Hpy188I	TCNGA	4 cut(s)	305, 520, 548, 752
Hpy188III	TCNNGA	3 cut(s)	228, 464, 646
Hpy8I	GTNNAC	3 cut(s)	335, 493, 526
HpyAV	CCTTC	2 cut(s)	65, 662
HpyCH4III	ACNGT	3 cut(s)	105, 344, 652
HpyCH4IV	ACGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 134, 909
HpyF3I	CTNAG	1 cut(s)	749
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	9 cut(s)	77, 273, 322, 384, 621, 790, 796, 809, 872
Kzo9I	GATC	3 cut(s)	272, 638, 752
LguI	GCTCTTC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	2 cut(s)	535, 646
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	140, 386
MalI	GATC	3 cut(s)	274, 640, 754
MboI	GATC	3 cut(s)	272, 638, 752
MboII	GAAGA	7 cut(s)	123, 143, 177, 290, 380, 575, 813
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	2 cut(s)	638, 752
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	6 cut(s)	246, 401, 514, 809, 827, 873
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	7 cut(s)	20, 41, 235, 448, 570, 826, 829
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	513, 661, 907
MslI	CAYNNNNRTG	1 cut(s)	791
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	442, 702
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	51, 134, 909
NciI	CCSGG	1 cut(s)	702
NcoI	CCATGG	1 cut(s)	73
NdeI	CATATG	1 cut(s)	758
NdeII	GATC	3 cut(s)	272, 638, 752
NlaIII	CATG	9 cut(s)	77, 273, 322, 384, 621, 790, 796, 809, 872
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	140, 386
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	3 cut(s)	322, 790, 872
PaeI	GCATGC	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	231, 393, 434
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	638, 752
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	791
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	3 cut(s)	513, 661, 907
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	272, 638, 752
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	442, 702
SetI	ASST	9 cut(s)	92, 160, 185, 208, 283, 562, 774, 847, 897
SmiMI	CAYNNNNRTG	1 cut(s)	791
SphI	GCATGC	1 cut(s)	790
Sse9I	AATT	6 cut(s)	246, 401, 514, 809, 827, 873
SseBI	AGGCCT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	535, 646
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	440, 700
StyI	CCWWGG	3 cut(s)	73, 235, 355
TaaI	ACNGT	3 cut(s)	105, 344, 652
TaiI	ACGT	1 cut(s)	92
TasI	AATT	6 cut(s)	246, 401, 514, 809, 827, 873
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	231, 393, 434
Tru1I	TTAA	3 cut(s)	513, 661, 907
Tru9I	TTAA	3 cut(s)	513, 661, 907
TscAI	CASTG	6 cut(s)	110, 331, 347, 356, 533, 598
TseFI	GTSAC	2 cut(s)	140, 386
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	2 cut(s)	140, 386
TspDTI	ATGAA	4 cut(s)	177, 681, 724, 822
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	6 cut(s)	110, 331, 347, 356, 533, 598
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	1 cut(s)	809
XbaI	TCTAGA	1 cut(s)	645
XceI	RCATGY	3 cut(s)	322, 790, 872
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	2 cut(s)	535, 646
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.