MD05G1204900.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
33445282 .. 33449294
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1204900.v1.1.491

Sequence Viewer

Length: 1875 bp
ATGAAGCTGTTTCGTCGATGCCAGAGGATCCTCATCCTCGCTCTGCTATGCGTCTCTGTTTTCACGCCCGTCGTCTTCGTCTCCCAGAGGCTCAAAAATCTCACGCCTAATTGGCGGAACGAATCCATAGAGGATTTATCGAATATTAAATACAGGACTGATAGTGTGAAACTTAGCGTCGAGCAGGAATCGAGTGAAGGCTTGAAAGAGCCGAGAAAAGTTTTATATGAAGACACATATTTGCTTTCTGCAGTTAATTATACTCTTAAAAAGGATCATGTTGATAAGGAATCCGGAAATGTTGGGGACGCTACTGATATGTTGGAAAGAACTACAAATGGAACCAAATACGAGAGCAACAAAGGAGATAAGCAACTTCAGCAGAGACAGGTATCATCCATGTCTAGGGGAAAGAAGCAATTGAACAAACAAGATCAGAATGTACACTCTCAGTCGCGGAAAGTAATAGATGAGAGAATAAGACGGAAGAAAGATGTAAGACCTAATCGTGCAGTTCAACACGATCAGAATGCACATTCGAATTTACAGAAAGTTACAAAGAAGATAAATGAGATGAAGGATCAAGTGATTAGAGCTAAAGCATACTTGAGTTCTGCACCACCAAGCAGTAAGTCAAGTTTAGTGAAGGAGTTGAAACTGCAAATCAAAGAGGTGGAACGAGCAATTGGTGGAGCCACCAAGGATTCGGATCTATCAAAGAGTGCCTTACAGAGAATGAGAAAGATGGAGTCTTCACTATCTAAAGCCAGGCGTACATACCCAGACTGCTCTTCCATGTCCAAAAAGCTTCGTGCTATGACTCAGAATGCTGAAGAGCAAATTCAGTCGCAGAAGAAGCAAGTCTCTTTTCTTTTCAGCCTCGCTTCAAGCACAACCCCAAAAGGCCTTCATTGTCTTTCTATGCAGCTGACTGCTGAATACTTTGCTCTGGCTCCCAAGGACAGGCAGTTTCCTAACCAGCAAAAGTTGCATGATTCAAAGCTCTATCATTATGCTGTTTTCTCCGACAATGTTCTGGGATGTACAGTGGTTGTGAACTCCACTGTTTCCACTGCCTTGAAACCAGAGAAGATTGTTTTCCATGTTGTGACTGATGCACTCAATTTTCCAGCAATCTCAATGTGGTTCTTATTAAATCCTCCTGGAAAAGCCACAATCCAAGTCCAGAGCATTGATAGTTTTGAATGGTTGTCTACCAAGTACAATACAAGTTTAAGGCAAAACTCCAGTGACCCTAGATATTCTTCCGAACTCAACCACCTCCGTTTCTACCTGCCAGATATCTTCCCAGCATTGAATAAGATTGTGCTCTTTGACCATGATGTGGTGGTGCAAAAGGATCTAAGTAAGCTATGGAGTGTTGATATGAAAGGAAAAGTAAATGGAGCAGTTGAGACTTGTCGGGAGAGTGAAACTTCCTTCCTTCGGATGGATACATTCATCAACTTCTCAGATCCATTTGTGGCAAAAAGGTTTGATGCCAATGCATGCACATGGGCATTTGGGATGAATTTGTTTGACCTTCAAGAATGGAGGAGAAAAGATCTGACTACACTCTACGACAAGTACTTGAAATCGGGTTACAAGAGGCCGTTGTGGGTGGCTGGGAGTTTGCCCTTAGGTTGGATCACCTTCTATAACCAGACGGTAGCTTTGGACAGGCGGTGGCACATCCTTGGGCTGGGTTATAACTCAGGTGTGGTTCGTGCTGACATTGATCGAGCGGCAGTAATACACTATGATGGAATCATGAAGCCATGGTTGGACATAGCGATTGCGAGGTACAAGGATTATTGGAGAAAATATGTCAACTATGACGACTCTTATCTGCAACGGTGCAACATTCATGCATAG

Protein Analysis

625

Amino Acids

71.84

Weight (kDa)

9.57

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 187 - 260 7.6e-27 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 305 - 598 1.2e-62 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1710
Acc36I ACCTGC 1 cut(s) 1302
AccB7I CCANNNNNTGG 1 cut(s) 1345
AccBSI CCGCTC 1 cut(s) 1745
AccI GTMKAC 1 cut(s) 1214
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 4 cut(s) 115, 457, 1684, 1745
AclWI GGATC 8 cut(s) 22, 35, 282, 588, 717, 1368, 1469, 1655
AcsI RAATTY 3 cut(s) 541, 840, 1531
AcuI CTGAAG 2 cut(s) 362, 852
AfaI GTAC 6 cut(s) 444, 775, 1045, 1223, 1589, 1805
AfiI CCNNNNNNNGG 7 cut(s) 405, 963, 1345, 1446, 1450, 1644, 1702
AjnI CCWGG 2 cut(s) 767, 1162
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 1766, 1798
AluBI AGCT 7 cut(s) 7, 596, 808, 928, 1003, 1372, 1673
AluI AGCT 7 cut(s) 7, 596, 808, 928, 1003, 1372, 1673
Alw21I GWGCWC 1 cut(s) 1332
Alw26I GTCTC 5 cut(s) 58, 85, 379, 868, 1409
AlwI GGATC 8 cut(s) 22, 35, 282, 588, 717, 1368, 1469, 1655
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 2 cut(s) 904, 1610
ApeKI GCWGC 1 cut(s) 925
ApoI RAATTY 3 cut(s) 541, 840, 1531
ArsI GACNNNNNNTTYG 2 cut(s) 1657, 1689
AsuHPI GGTGA 1 cut(s) 1642
AsuII TTCGAA 1 cut(s) 539
AxyI CCTNAGG 1 cut(s) 1639
BamHI GGATCC 1 cut(s) 27
BbsI GAAGAC 3 cut(s) 67, 237, 744
Bbv12I GWGCWC 1 cut(s) 1332
BbvI GCAGC 1 cut(s) 937
BccI CCATC 3 cut(s) 739, 1444, 1757
BceAI ACGGC 1 cut(s) 1597
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 2 cut(s) 769, 1164
BciVI GTATCC 1 cut(s) 1447
BcoDI GTCTC 5 cut(s) 58, 85, 379, 868, 1409
BfaI CTAG 2 cut(s) 405, 1257
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 1302
BfuI GTATCC 1 cut(s) 1447
BglI GCCNNNNNGGC 1 cut(s) 112
BglII AGATCT 1 cut(s) 1564
BisI GCNGC 2 cut(s) 926, 1746
BlsI GCNGC 2 cut(s) 927, 1747
BmcAI AGTACT 1 cut(s) 1589
Bme1390I CCNGG 2 cut(s) 769, 1164
BmiI GGNNCC 4 cut(s) 29, 343, 694, 954
BmrFI CCNGG 2 cut(s) 769, 1164
BmsI GCATC 3 cut(s) 8, 1105, 1489
BpiI GAAGAC 3 cut(s) 67, 237, 744
BpmI CTGGAG 1 cut(s) 1231
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 628
BsaBI GATNNNNATC 2 cut(s) 32, 708
BsaJI CCNNGG 4 cut(s) 699, 957, 1696, 1778
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 7 cut(s) 405, 963, 1345, 1446, 1450, 1644, 1702
Bse1I ACTGG 1 cut(s) 1248
Bse21I CCTNAGG 1 cut(s) 1639
Bse8I GATNNNNATC 2 cut(s) 32, 708
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 2 cut(s) 769, 1164
BseDI CCNNGG 4 cut(s) 699, 957, 1696, 1778
BseGI GGATG 6 cut(s) 33, 395, 1046, 1455, 1533, 1692
BseJI GATNNNNATC 2 cut(s) 32, 708
BseLI CCNNNNNNNGG 7 cut(s) 405, 963, 1345, 1446, 1450, 1644, 1702
BseMII CTCAG 4 cut(s) 464, 836, 1485, 1728
BseNI ACTGG 1 cut(s) 1248
BseRI GAGGAG 1 cut(s) 1570
BseXI GCAGC 1 cut(s) 937
BseYI CCCAGC 3 cut(s) 1309, 1625, 1702
BsgI GTGCAG 2 cut(s) 531, 600
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 906, 1612
BsiHKAI GWGCWC 1 cut(s) 1332
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 7 cut(s) 405, 963, 1345, 1446, 1450, 1644, 1702
BsmAI GTCTC 5 cut(s) 58, 85, 379, 868, 1409
BsmBI CGTCTC 2 cut(s) 58, 85
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 2 cut(s) 535, 832
BsnI GGCC 2 cut(s) 906, 1612
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 1332
Bsp13I TCCGGA 1 cut(s) 293
Bsp1407I TGTACA 2 cut(s) 442, 1043
Bsp19I CCATGG 1 cut(s) 1778
BspACI CCGC 4 cut(s) 115, 457, 1684, 1745
BspANI GGCC 2 cut(s) 906, 1612
BspCNI CTCAG 4 cut(s) 463, 835, 1484, 1727
BspEI TCCGGA 1 cut(s) 293
BspFNI CGCG 1 cut(s) 457
BspHI TCATGA 1 cut(s) 1770
BspLI GGNNCC 4 cut(s) 29, 343, 694, 954
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 1302
BspPI GGATC 8 cut(s) 22, 35, 282, 588, 717, 1368, 1469, 1655
BspQI GCTCTTC 2 cut(s) 796, 828
BspT104I TTCGAA 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 1745
BsrGI TGTACA 2 cut(s) 442, 1043
BsrI ACTGG 1 cut(s) 1248
BssECI CCNNGG 4 cut(s) 699, 957, 1696, 1778
BssT1I CCWWGG 4 cut(s) 699, 957, 1696, 1778
Bst2UI CCWGG 2 cut(s) 769, 1164
Bst4CI ACNGT 4 cut(s) 1048, 1066, 1669, 1857
Bst6I CTCTTC 2 cut(s) 796, 828
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 2 cut(s) 442, 1043
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 1510
BstDEI CTNAG 7 cut(s) 173, 450, 822, 1364, 1471, 1639, 1714
BstDSI CCRYGG 1 cut(s) 1778
BstF5I GGATG 6 cut(s) 33, 395, 1046, 1455, 1533, 1692
BstFNI CGCG 1 cut(s) 457
BstMAI GTCTC 5 cut(s) 58, 85, 379, 868, 1409
BstMWI GCNNNNNNNGC 4 cut(s) 112, 379, 856, 988
BstNI CCWGG 2 cut(s) 769, 1164
BstNSI RCATGY 1 cut(s) 1512
BstSCI CCNGG 2 cut(s) 767, 1162
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 937
BstV2I GAAGAC 3 cut(s) 67, 237, 744
BstX2I RGATCY 5 cut(s) 27, 709, 1360, 1474, 1564
BstYI RGATCY 5 cut(s) 27, 709, 1360, 1474, 1564
Bsu36I CCTNAGG 1 cut(s) 1639
BsuI GTATCC 1 cut(s) 1447
BsuRI GGCC 2 cut(s) 906, 1612
BtgI CCRYGG 1 cut(s) 1778
BtsCI GGATG 6 cut(s) 33, 395, 1046, 1455, 1533, 1692
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 4 cut(s) 1053, 1062, 1071, 1255
BveI ACCTGC 1 cut(s) 1302
Cac8I GCNNGC 1 cut(s) 1510
CciI TCATGA 1 cut(s) 1770
CseI GACGC 3 cut(s) 40, 166, 317
Csp6I GTAC 6 cut(s) 443, 774, 1044, 1222, 1588, 1804
CviQI GTAC 6 cut(s) 443, 774, 1044, 1222, 1588, 1804
DdeI CTNAG 7 cut(s) 173, 450, 822, 1364, 1471, 1639, 1714
Eam1104I CTCTTC 2 cut(s) 796, 828
EarI CTCTTC 2 cut(s) 796, 828
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 4 cut(s) 699, 957, 1696, 1778
Eco147I AGGCCT 1 cut(s) 906
Eco32I GATATC 1 cut(s) 1303
Eco57I CTGAAG 2 cut(s) 362, 852
Eco81I CCTNAGG 1 cut(s) 1639
EcoRII CCWGG 2 cut(s) 767, 1162
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 4 cut(s) 699, 957, 1696, 1778
EcoT22I ATGCAT 2 cut(s) 1510, 1873
ErhI CCWWGG 4 cut(s) 699, 957, 1696, 1778
Esp3I CGTCTC 2 cut(s) 58, 85
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 1 cut(s) 320
FblI GTMKAC 1 cut(s) 1214
Fnu4HI GCNGC 2 cut(s) 926, 1746
FokI GGATG 6 cut(s) 20, 382, 1053, 1462, 1540, 1679
Fsp4HI GCNGC 2 cut(s) 926, 1746
FspBI CTAG 2 cut(s) 405, 1257
GluI GCNGC 2 cut(s) 926, 1746
GsaI CCCAGC 3 cut(s) 1313, 1629, 1706
GsuI CTGGAG 1 cut(s) 1231
HaeIII GGCC 2 cut(s) 906, 1612
HapII CCGG 1 cut(s) 294
HgaI GACGC 3 cut(s) 40, 166, 317
HincII GTYRAC 1 cut(s) 1831
HindII GTYRAC 1 cut(s) 1831
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 9 cut(s) 122, 188, 290, 704, 749, 820, 995, 1767, 1841
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 1642
Hpy166II GTNNAC 4 cut(s) 445, 1057, 1215, 1831
Hpy188I TCNGA 9 cut(s) 438, 528, 709, 825, 1027, 1270, 1449, 1474, 1569
Hpy188III TCNNGA 5 cut(s) 294, 1186, 1424, 1547, 1771
Hpy8I GTNNAC 4 cut(s) 445, 1057, 1215, 1831
Hpy99I CGWCG 3 cut(s) 18, 74, 182
HpyAV CCTTC 8 cut(s) 191, 571, 640, 917, 1450, 1454, 1553, 1663
HpyCH4III ACNGT 4 cut(s) 1048, 1066, 1669, 1857
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 379, 856, 988
HpyF3I CTNAG 7 cut(s) 173, 450, 822, 1364, 1471, 1639, 1714
Kpn2I TCCGGA 1 cut(s) 293
LguI GCTCTTC 2 cut(s) 796, 828
LmnI GCTCC 3 cut(s) 692, 958, 1406
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 3 cut(s) 8, 1105, 1489
MaeI CTAG 2 cut(s) 405, 1257
MaeIII GTNAC 4 cut(s) 553, 1108, 1250, 1601
MbiI CCGCTC 1 cut(s) 1745
MfeI CAATTG 2 cut(s) 419, 684
MflI RGATCY 5 cut(s) 27, 709, 1360, 1474, 1564
MhlI GDGCHC 1 cut(s) 1332
MluCI AATT 8 cut(s) 109, 256, 419, 541, 684, 840, 1123, 1531
MlyI GAGTC 3 cut(s) 758, 814, 1835
MmeI TCCRAC 4 cut(s) 303, 1050, 1625, 1764
Mph1103I ATGCAT 2 cut(s) 1510, 1873
MroI TCCGGA 1 cut(s) 293
MseI TTAA 5 cut(s) 147, 255, 267, 1154, 1235
MslI CAYNNNNRTG 2 cut(s) 1513, 1761
MspA1I CMGCKG 1 cut(s) 928
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 769, 1164
MunI CAATTG 2 cut(s) 419, 684
Mva1269I GAATGC 2 cut(s) 535, 832
MvaI CCWGG 2 cut(s) 769, 1164
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 4 cut(s) 112, 379, 856, 988
NcoI CCATGG 1 cut(s) 1778
NlaIV GGNNCC 4 cut(s) 29, 343, 694, 954
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 1108, 1250
NsiI ATGCAT 2 cut(s) 1510, 1873
NspI RCATGY 1 cut(s) 1512
NspV TTCGAA 1 cut(s) 539
PaeI GCATGC 1 cut(s) 1512
PagI TCATGA 1 cut(s) 1770
PceI AGGCCT 1 cut(s) 906
PciSI GCTCTTC 2 cut(s) 796, 828
PctI GAATGC 2 cut(s) 535, 832
PfeI GAWTC 6 cut(s) 122, 188, 290, 704, 995, 1767
PflMI CCANNNNNTGG 1 cut(s) 1345
PfoI TCCNGGA 1 cut(s) 1162
PkrI GCNGC 2 cut(s) 927, 1747
PleI GAGTC 3 cut(s) 757, 814, 1835
PpsI GAGTC 3 cut(s) 757, 814, 1835
PsiI TTATAA 1 cut(s) 1710
Psp6I CCWGG 2 cut(s) 767, 1162
PspFI CCCAGC 3 cut(s) 1309, 1625, 1702
PspGI CCWGG 2 cut(s) 767, 1162
PspN4I GGNNCC 4 cut(s) 29, 343, 694, 954
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 5 cut(s) 27, 709, 1360, 1474, 1564
PvuII CAGCTG 1 cut(s) 928
RsaI GTAC 6 cut(s) 444, 775, 1045, 1223, 1589, 1805
RsaNI GTAC 6 cut(s) 443, 774, 1044, 1222, 1588, 1804
RseI CAYNNNNRTG 2 cut(s) 1513, 1761
SapI GCTCTTC 2 cut(s) 796, 828
SaqAI TTAA 5 cut(s) 147, 255, 267, 1154, 1235
SatI GCNGC 2 cut(s) 926, 1746
ScaI AGTACT 1 cut(s) 1589
SchI GAGTC 3 cut(s) 758, 814, 1835
ScrFI CCNGG 2 cut(s) 769, 1164
SduI GDGCHC 1 cut(s) 1332
SfaNI GCATC 3 cut(s) 8, 1105, 1489
SfcI CTRYAG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 539
SmiMI CAYNNNNRTG 2 cut(s) 1513, 1761
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SphI GCATGC 1 cut(s) 1512
Sse9I AATT 8 cut(s) 109, 256, 419, 541, 684, 840, 1123, 1531
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 4 cut(s) 115, 457, 1684, 1745
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 405, 1257
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 2 cut(s) 767, 1162
StyI CCWWGG 4 cut(s) 699, 957, 1696, 1778
TaaI ACNGT 4 cut(s) 1048, 1066, 1669, 1857
TaqI TCGA 6 cut(s) 16, 140, 180, 191, 539, 1741
TasI AATT 8 cut(s) 109, 256, 419, 541, 684, 840, 1123, 1531
TatI WGTACW 4 cut(s) 442, 1043, 1221, 1587
TauI GCSGC 1 cut(s) 1748
TfiI GAWTC 6 cut(s) 122, 188, 290, 704, 995, 1767
Tru1I TTAA 5 cut(s) 147, 255, 267, 1154, 1235
Tru9I TTAA 5 cut(s) 147, 255, 267, 1154, 1235
TscAI CASTG 4 cut(s) 1053, 1069, 1078, 1255
TseFI GTSAC 2 cut(s) 1108, 1250
TseI GCWGC 1 cut(s) 925
Tsp45I GTSAC 2 cut(s) 1108, 1250
TspDTI ATGAA 9 cut(s) 17, 243, 590, 899, 1403, 1450, 1544, 1787, 1856
TspGWI ACGGA 2 cut(s) 499, 1274
TspRI CASTG 4 cut(s) 1053, 1069, 1078, 1255
Van91I CCANNNNNTGG 1 cut(s) 1345
XapI RAATTY 3 cut(s) 541, 840, 1531
XceI RCATGY 1 cut(s) 1512
XmiI GTMKAC 1 cut(s) 1214
XspI CTAG 2 cut(s) 405, 1257
ZrmI AGTACT 1 cut(s) 1589
Zsp2I ATGCAT 2 cut(s) 1510, 1873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.