Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Forward (+)

14194096 .. 14195741

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAGCACCCAACATGGAGACGATAACGGAGTCTCTAGAGAAATCGATGATGAATTGTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGGGTTTGGGAGATCGTCGAGCAACGAACACATGACTCCGATCTCAGATAGAACATTGGAGCTCAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAGACAGGAGAGATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAAGTGATGAATGCAGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGATAGCTCATATTACGACAGCGAAGAGTCTTCATCAGAGTCATCTCCATCATCAAGAGAGAATCATAAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGATGTGCTAGTGGTTGCTGGTTGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTTGAGGACTGTCCTAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.57

Weight (kDa)

4.54

Isoelectric Point (pI)

82.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	257, 270, 281
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflII	CTTAAG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	157, 336, 470, 499, 532
AluI	AGCT	5 cut(s)	157, 336, 470, 499, 532
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	14, 39, 294
AlwI	GGATC	3 cut(s)	257, 270, 281
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	89, 385
BcoDI	GTCTC	3 cut(s)	14, 39, 294
BfaI	CTAG	2 cut(s)	38, 449
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmiI	GGNNCC	3 cut(s)	264, 313, 492
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	191, 239
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	191, 239
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	536
BsgI	GTGCAG	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	3 cut(s)	14, 39, 294
BsmBI	CGTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
BspCNI	CTCAG	1 cut(s)	152
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	3 cut(s)	264, 313, 492
BspPI	GGATC	3 cut(s)	257, 270, 281
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	191, 239
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	195, 296, 316, 512
Bst6I	CTCTTC	3 cut(s)	180, 348, 414
BstAFI	CTTAAG	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	139, 495
BstKTI	GATC	7 cut(s)	73, 110, 138, 205, 265, 289, 547
BstMAI	GTCTC	3 cut(s)	14, 39, 294
BstMBI	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	262, 286
BstYI	RGATCY	2 cut(s)	262, 286
Bsu15I	ATCGAT	1 cut(s)	47
BsuTUI	ATCGAT	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	184, 200, 301
CaiI	CAGNNNCTG	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	4 cut(s)	16, 127, 478, 487
CviJI	RGCY	5 cut(s)	157, 336, 470, 499, 532
CviKI_1	RGCY	5 cut(s)	157, 336, 470, 499, 532
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	139, 495
DpnI	GATC	7 cut(s)	72, 109, 137, 204, 264, 288, 546
DpnII	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
Eam1104I	CTCTTC	3 cut(s)	180, 348, 414
EarI	CTCTTC	3 cut(s)	180, 348, 414
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	4 cut(s)	19, 130, 481, 490
FaiI	YATR	9 cut(s)	17, 128, 230, 307, 309, 340, 396, 479, 488
FatI	CATG	4 cut(s)	15, 126, 477, 486
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	2 cut(s)	38, 449
GluI	GCNGC	1 cut(s)	525
Hin1II	CATG	4 cut(s)	19, 130, 481, 490
HindIII	AAGCTT	2 cut(s)	468, 497
HinfI	GANTC	6 cut(s)	32, 130, 302, 356, 368, 391
Hpy188I	TCNGA	7 cut(s)	66, 75, 92, 135, 142, 325, 367
Hpy188III	TCNNGA	5 cut(s)	38, 200, 290, 384, 567
Hpy99I	CGWCG	2 cut(s)	92, 115
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	4 cut(s)	195, 296, 316, 512
HpyCH4V	TGCA	4 cut(s)	284, 465, 524, 560
HpyF3I	CTNAG	2 cut(s)	139, 495
Hsp92II	CATG	4 cut(s)	19, 130, 481, 490
Kzo9I	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	172, 198, 220, 303, 444
Lsp1109I	GCAGC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	38, 449
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	7 cut(s)	72, 109, 137, 204, 264, 288, 546
MboI	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
MflI	RGATCY	2 cut(s)	262, 286
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	55, 160
MlyI	GAGTC	5 cut(s)	41, 124, 296, 365, 377
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	5 cut(s)	253, 415, 418, 499, 561
MseI	TTAA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	286
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
NlaIII	CATG	4 cut(s)	19, 130, 481, 490
NlaIV	GGNNCC	3 cut(s)	264, 313, 492
NmuCI	GTSAC	1 cut(s)	182
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	5 cut(s)	40, 124, 296, 364, 376
PpsI	GAGTC	5 cut(s)	40, 124, 296, 364, 376
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	264, 313, 492
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	262, 286
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	7 cut(s)	70, 107, 135, 202, 262, 286, 544
SchI	GAGTC	5 cut(s)	41, 124, 296, 365, 377
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	159, 338, 472, 501, 534, 553
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	55, 160
SspMI	CTAG	2 cut(s)	38, 449
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	4 cut(s)	195, 296, 316, 512
TaqI	TCGA	3 cut(s)	47, 113, 547
TasI	AATT	2 cut(s)	55, 160
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	191, 200, 301
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	6 cut(s)	17, 68, 293, 351, 466, 475
TspGWI	ACGGA	2 cut(s)	44, 258
TspRI	CASTG	3 cut(s)	191, 200, 301
Vha464I	CTTAAG	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	37
XspI	CTAG	2 cut(s)	38, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.