Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003904.1

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Reverse (-)

4780 .. 5998

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003904.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggcgacgatcgctgcatctctggagcagtctctgcaaaactgttccttaaaccaccgccagaccaccatcgccgtcggtggcggaaacggtagccgtagcagtcaagggtcgagtcatgttgggatgagaaggtcgtcgtcaacctcatcaacctcagacgatgcgcagcagaatcaattcatgcccgacaacagcaatgaggacacggctctggagctcaactcccatgtctcgcttccctaccattgggaacaatgcctcgatttaaagacgggtgagatttactacataaattggaggaacggaatgaaagcgaaagaagatccgagaacagcagcacaatacagcggagactgttactactcggatgatgatgacaatagctcctatgatagcgaagagtcttcgaccgagtcgtctccatcttcttcaagagagagagagccctataataatcagcagcagaaggaatcagatcagaataataagcaggaccatgttctggttgtggctggctgcaaatcgtgtctcatgtattacatggtccccaaacagcacgaggattgccccaaatgcagtggccagcttctccacttcgatcgatccgaaagcggctcaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

4.83

Isoelectric Point (pI)

72.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
Acc16I	TGCGCA	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	505
AciI	CCGC	4 cut(s)	58, 84, 351, 615
AclWI	GGATC	2 cut(s)	320, 600
AcoI	YGGCCR	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	249, 505
AgsI	TTSAA	1 cut(s)	435
AluBI	AGCT	3 cut(s)	220, 387, 589
AluI	AGCT	3 cut(s)	220, 387, 589
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	5 cut(s)	36, 238, 348, 426, 536
AlwI	GGATC	2 cut(s)	320, 600
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	5 cut(s)	14, 169, 338, 463, 519
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	496, 547
AsuHPI	GGTGA	2 cut(s)	290, 612
AvaII	GGWCC	2 cut(s)	496, 547
BalI	TGGCCA	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	222, 450
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	181, 350, 475, 506
BccI	CCATC	2 cut(s)	77, 433
BceAI	ACGGC	3 cut(s)	59, 81, 225
BcoDI	GTCTC	5 cut(s)	36, 238, 348, 426, 536
BisI	GCNGC	6 cut(s)	15, 170, 339, 464, 520, 616
BlsI	GCNGC	6 cut(s)	16, 171, 340, 465, 521, 617
Bme18I	GGWCC	2 cut(s)	496, 547
BmgT120I	GGNCC	2 cut(s)	496, 547
BmiI	GGNNCC	1 cut(s)	549
BmsI	GCATC	2 cut(s)	26, 154
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	2 cut(s)	44, 236
Bsa29I	ATCGAT	1 cut(s)	604
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 505
Bse3DI	GCAATG	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	604
BseGI	GGATG	2 cut(s)	132, 376
BseLI	CCNNNNNNNGG	2 cut(s)	249, 505
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	181, 350, 475, 506
Bsh1285I	CGRYCG	3 cut(s)	12, 414, 604
BshFI	GGCC	1 cut(s)	585
BshVI	ATCGAT	1 cut(s)	604
BsiEI	CGRYCG	3 cut(s)	12, 414, 604
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	249, 505
BsmAI	GTCTC	5 cut(s)	36, 238, 348, 426, 536
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	585
Bsp1286I	GDGCHC	2 cut(s)	222, 450
Bsp143I	GATC	5 cut(s)	9, 325, 478, 601, 605
BspACI	CCGC	4 cut(s)	58, 84, 351, 615
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	320, 600
BsrDI	GCAATG	1 cut(s)	205
BssMI	GATC	5 cut(s)	9, 325, 478, 601, 605
BssSI	CACGAG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	44, 92, 359
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	517, 587
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	132, 376
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	12, 328, 481, 604, 608
BstMAI	GTCTC	5 cut(s)	36, 238, 348, 426, 536
BstMBI	GATC	5 cut(s)	9, 325, 478, 601, 605
BstMCI	CGRYCG	3 cut(s)	12, 414, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 34, 576
BstV1I	GCAGC	4 cut(s)	181, 350, 475, 506
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	585
BsuTUI	ATCGAT	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	132, 376
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	517, 587
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	496, 547
ClaI	ATCGAT	1 cut(s)	604
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	7 cut(s)	119, 184, 230, 500, 535, 544, 624
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	5 cut(s)	11, 327, 480, 603, 607
DpnII	GATC	5 cut(s)	9, 325, 478, 601, 605
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 450
Eco47I	GGWCC	2 cut(s)	496, 547
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	222, 450
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	7 cut(s)	122, 187, 233, 503, 538, 547, 627
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	7 cut(s)	118, 183, 229, 499, 534, 543, 623
Fnu4HI	GCNGC	6 cut(s)	15, 170, 339, 464, 520, 616
FokI	GGATG	2 cut(s)	139, 383
FriOI	GRGCYC	2 cut(s)	222, 450
Fsp4HI	GCNGC	6 cut(s)	15, 170, 339, 464, 520, 616
FspI	TGCGCA	1 cut(s)	168
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	6 cut(s)	15, 170, 339, 464, 520, 616
GsuI	CTGGAG	2 cut(s)	44, 236
HaeIII	GGCC	1 cut(s)	585
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	7 cut(s)	122, 187, 233, 503, 538, 547, 627
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	5 cut(s)	115, 175, 404, 416, 473
HphI	GGTGA	2 cut(s)	290, 612
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	6 cut(s)	160, 330, 370, 478, 483, 610
Hpy188III	TCNNGA	3 cut(s)	23, 215, 435
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	3 cut(s)	10, 80, 142
HpyAV	CCTTC	2 cut(s)	126, 463
HpyCH4III	ACNGT	3 cut(s)	44, 92, 359
HpyCH4V	TGCA	4 cut(s)	17, 37, 522, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 34, 576
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	7 cut(s)	122, 187, 233, 503, 538, 547, 627
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	9, 325, 478, 601, 605
LmnI	GCTCC	3 cut(s)	25, 217, 392
LpnPI	CCDG	7 cut(s)	8, 74, 200, 479, 491, 501, 599
Lsp1109I	GCAGC	4 cut(s)	181, 350, 475, 506
LweI	GCATC	2 cut(s)	26, 154
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	5 cut(s)	11, 327, 480, 603, 607
MboI	GATC	5 cut(s)	9, 325, 478, 601, 605
MboII	GAAGA	5 cut(s)	335, 399, 413, 420, 423
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	222, 450
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	2 cut(s)	179, 295
MluNI	TGGCCA	1 cut(s)	585
MlyI	GAGTC	3 cut(s)	124, 413, 425
MnlI	CCTC	6 cut(s)	157, 166, 196, 272, 294, 556
Mox20I	TGGCCA	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	2 cut(s)	50, 269
Msp20I	TGGCCA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	11, 34, 576
NdeII	GATC	5 cut(s)	9, 325, 478, 601, 605
NlaIII	CATG	7 cut(s)	122, 187, 233, 503, 538, 547, 627
NlaIV	GGNNCC	1 cut(s)	549
NsbI	TGCGCA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 606
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	175, 473
PflFI	GACNNNGTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	6 cut(s)	16, 171, 340, 465, 521, 617
Ple19I	CGATCG	2 cut(s)	12, 604
PleI	GAGTC	3 cut(s)	123, 412, 424
PpsI	GAGTC	3 cut(s)	123, 412, 424
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	496, 547
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	415
PvuI	CGATCG	2 cut(s)	12, 604
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	50, 269
SatI	GCNGC	6 cut(s)	15, 170, 339, 464, 520, 616
Sau3AI	GATC	5 cut(s)	9, 325, 478, 601, 605
Sau96I	GGNCC	2 cut(s)	496, 547
SchI	GAGTC	3 cut(s)	124, 413, 425
SduI	GDGCHC	2 cut(s)	222, 450
SetI	ASST	6 cut(s)	137, 149, 158, 222, 389, 591
SfaNI	GCATC	2 cut(s)	26, 154
SinI	GGWCC	2 cut(s)	496, 547
Sse9I	AATT	2 cut(s)	179, 295
SsiI	CCGC	4 cut(s)	58, 84, 351, 615
SstI	GAGCTC	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	44, 92, 359
TaqI	TCGA	5 cut(s)	113, 264, 410, 600, 604
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	2 cut(s)	179, 295
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	175, 473
Tru1I	TTAA	2 cut(s)	50, 269
Tru9I	TTAA	2 cut(s)	50, 269
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	5 cut(s)	14, 169, 338, 463, 519
TspDTI	ATGAA	2 cut(s)	172, 326
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	586
Tth111I	GACNNNGTC	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	496, 547
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.